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ClCG09G015480 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG09G015480
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotrans_gag domain-containing protein
Genome locationCG_Chr09:29984957..29992723
RNA-Seq ExpressionClCG09G015480
SyntenyClCG09G015480
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026280.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-1748Show/hide
Query:  EREGELSHPVMTSAVEAQVLRDFARQIVENLSSLSKNPERLYGIERLKALEASTFEGTVDSKEAEVWITRLEKCFRVIRCPEDRKVSLVVFLLEKGAKDW
        E + E S P +   VE Q+L   A++++  +     + E+ YGIERLKAL A+TF GT +  +AE W+T +EKCF+V RC EDRKV L  FLL+ GA+DW
Subjt:  EREGELSHPVMTSAVEAQVLRDFARQIVENLSSLSKNPERLYGIERLKALEASTFEGTVDSKEAEVWITRLEKCFRVIRCPEDRKVSLVVFLLEKGAKDW

KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.0e-1841.13Show/hide
Query:  SKSFFGCLLTRKRSKRLVTTSSATCKQHSECYLRSPEEREGELSHPVMTSAVEAQVLRDFARQIVENLSSLSKNPERLYGIERLKALEASTFEGTVDSKE
        S +F G   T  R +      + T     E  + S E  + E S P +   +E Q+L   A++++  + S   +PE+ YGIERLKAL A+TF GT +  +
Subjt:  SKSFFGCLLTRKRSKRLVTTSSATCKQHSECYLRSPEEREGELSHPVMTSAVEAQVLRDFARQIVENLSSLSKNPERLYGIERLKALEASTFEGTVDSKE

Query:  AEVWITRLEKCFRVIRCPEDRKVSLVVFLLEKG----AKDW
        AE W+T +EKCFRV RCPEDRKV L  FLL+ G     +DW
Subjt:  AEVWITRLEKCFRVIRCPEDRKVSLVVFLLEKG----AKDW

KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.6e-1748Show/hide
Query:  EREGELSHPVMTSAVEAQVLRDFARQIVENLSSLSKNPERLYGIERLKALEASTFEGTVDSKEAEVWITRLEKCFRVIRCPEDRKVSLVVFLLEKGAKDW
        E + E S P +   VE Q+L   A+++V  + S   +PE+ YG ERLKAL A+TF GT +  + E W+T +EKCFRV R  EDRKV L  FLL+  A+DW
Subjt:  EREGELSHPVMTSAVEAQVLRDFARQIVENLSSLSKNPERLYGIERLKALEASTFEGTVDSKEAEVWITRLEKCFRVIRCPEDRKVSLVVFLLEKGAKDW

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]2.6e-1748Show/hide
Query:  EREGELSHPVMTSAVEAQVLRDFARQIVENLSSLSKNPERLYGIERLKALEASTFEGTVDSKEAEVWITRLEKCFRVIRCPEDRKVSLVVFLLEKGAKDW
        E + E S P +   VE Q+L   A+++V  + S   +PE+ YG ERLKAL A+TF GT +  + E W+T +EKCFRV R  EDRKV L  FLL+  A+DW
Subjt:  EREGELSHPVMTSAVEAQVLRDFARQIVENLSSLSKNPERLYGIERLKALEASTFEGTVDSKEAEVWITRLEKCFRVIRCPEDRKVSLVVFLLEKGAKDW

XP_038877272.1 uncharacterized protein LOC120069556 [Benincasa hispida]4.2e-2348.78Show/hide
Query:  KRLVTTSSATCKQHSECYLRSPEEREGELSHPVMTSAVEAQVLRDFARQIVENLSSLSKNPERLYGIERLKALEASTFEGTVDSKEAEVWITRLEKCFRV
        K+ V+TS AT K        + E  +GE SHP      + Q++R FAR + ENL  ++ +P++ + IERLKAL ASTFEGT++  +AE W   +EKCFRV
Subjt:  KRLVTTSSATCKQHSECYLRSPEEREGELSHPVMTSAVEAQVLRDFARQIVENLSSLSKNPERLYGIERLKALEASTFEGTVDSKEAEVWITRLEKCFRV

Query:  IRCPEDRKVSLVVFLLEKGAKDW
        + CPEDRKV+L  FLL+K A+DW
Subjt:  IRCPEDRKVSLVVFLLEKGAKDW

TrEMBL top hitse value%identityAlignment
A0A5A7SJ99 DNA/RNA polymerases superfamily protein5.7e-1848Show/hide
Query:  EREGELSHPVMTSAVEAQVLRDFARQIVENLSSLSKNPERLYGIERLKALEASTFEGTVDSKEAEVWITRLEKCFRVIRCPEDRKVSLVVFLLEKGAKDW
        E + E S P +   VE Q+L   A++++  +     + E+ YGIERLKAL A+TF GT +  +AE W+T +EKCF+V RC EDRKV L  FLL+ GA+DW
Subjt:  EREGELSHPVMTSAVEAQVLRDFARQIVENLSSLSKNPERLYGIERLKALEASTFEGTVDSKEAEVWITRLEKCFRVIRCPEDRKVSLVVFLLEKGAKDW

A0A5A7T1M0 Reverse transcriptase1.3e-1748Show/hide
Query:  EREGELSHPVMTSAVEAQVLRDFARQIVENLSSLSKNPERLYGIERLKALEASTFEGTVDSKEAEVWITRLEKCFRVIRCPEDRKVSLVVFLLEKGAKDW
        E + E S P +   VE Q+L   A+++V  + S   +PE+ YG ERLKAL A+TF GT +  + E W+T +EKCFRV R  EDRKV L  FLL+  A+DW
Subjt:  EREGELSHPVMTSAVEAQVLRDFARQIVENLSSLSKNPERLYGIERLKALEASTFEGTVDSKEAEVWITRLEKCFRVIRCPEDRKVSLVVFLLEKGAKDW

A0A5A7U067 Retrotrans_gag domain-containing protein1.7e-1749.5Show/hide
Query:  EEREGELSHPVMTSAVEAQVLRDFARQIVENLSSLSKNPERLYGIERLKALEASTFEGTVDSKEAEVWITRLEKCFRVIRCPEDRKVSLVVFLLEKGAKD
        EE + E S   +   VE Q+L   A+ +V  + S   N E+ + IERLKAL A+TF GT +  +AE W+T +EKCF+V+RC EDRKV LVVFLL+ G +D
Subjt:  EEREGELSHPVMTSAVEAQVLRDFARQIVENLSSLSKNPERLYGIERLKALEASTFEGTVDSKEAEVWITRLEKCFRVIRCPEDRKVSLVVFLLEKGAKD

Query:  W
        W
Subjt:  W

A0A5D3BB91 Reverse transcriptase1.3e-1748Show/hide
Query:  EREGELSHPVMTSAVEAQVLRDFARQIVENLSSLSKNPERLYGIERLKALEASTFEGTVDSKEAEVWITRLEKCFRVIRCPEDRKVSLVVFLLEKGAKDW
        E + E S P +   VE Q+L   A+++V  + S   +PE+ YG ERLKAL A+TF GT +  + E W+T +EKCFRV R  EDRKV L  FLL+  A+DW
Subjt:  EREGELSHPVMTSAVEAQVLRDFARQIVENLSSLSKNPERLYGIERLKALEASTFEGTVDSKEAEVWITRLEKCFRVIRCPEDRKVSLVVFLLEKGAKDW

A0A5D3DES5 DNA/RNA polymerases superfamily protein2.0e-1841.13Show/hide
Query:  SKSFFGCLLTRKRSKRLVTTSSATCKQHSECYLRSPEEREGELSHPVMTSAVEAQVLRDFARQIVENLSSLSKNPERLYGIERLKALEASTFEGTVDSKE
        S +F G   T  R +      + T     E  + S E  + E S P +   +E Q+L   A++++  + S   +PE+ YGIERLKAL A+TF GT +  +
Subjt:  SKSFFGCLLTRKRSKRLVTTSSATCKQHSECYLRSPEEREGELSHPVMTSAVEAQVLRDFARQIVENLSSLSKNPERLYGIERLKALEASTFEGTVDSKE

Query:  AEVWITRLEKCFRVIRCPEDRKVSLVVFLLEKG----AKDW
        AE W+T +EKCFRV RCPEDRKV L  FLL+ G     +DW
Subjt:  AEVWITRLEKCFRVIRCPEDRKVSLVVFLLEKG----AKDW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACCTCGTCAGCAACGTGCAAGCAACACTCAGAATGCTACTTAAGATCCCCAGAAGAAAGGGAAGGAGAATTAAGTCATCCGGTGATGACGAGTGCGGTAGAAGCACAGGT
ACTTCGTGATTTTGCTCGGCAGATAGTTGAGAATTTAAGTAGTTTGTCTAAAAATCCTGAGAGGTTGTATGGAATAGAAAGGTTAAAAGCCTTAGAAGCAAGTACGTTTG
AAGGGACGGTAGATTCCAAAGAAGCAGAGGTATGGATTACTCGATTAGAAAAGTGTTTCCGAATGTCCAGAAGATCGAAAAGTTTCTTTGGTTGTCTTCTTACTCGAAAA
AGGAGCAAAAGACTGGTGACGACCTCGTCAGCAACGTGCAAGCAACACTCAGAATGCTACTTAAGATCCCCAGAAGAAAGGGAAGGAGAATTAAGTCATCCGGTGATGAC
GAGTGCGGTAGAAGCACAGGTACTTCGTGATTTTGCTCGGCAGATAGTTGAGAATTTAAGTAGTTTGTCTAAAAATCCTGAGAGGTTGTATGGAATAGAAAGGTTAAAAG
CCTTAGAAGCAAGTACGTTTGAAGGGACGGTAGATTCCAAAGAAGCAGAGGTATGGATTACTCGATTAGAAAAGTGTTTCCGAGTAATAAGATGTCCAGAAGATCGAAAA
GTTTCTTTGGTTGTCTTCTTACTCGAAAAAGGAGCAAAAGACTGGTGA
mRNA sequenceShow/hide mRNA sequence
ACCTCGTCAGCAACGTGCAAGCAACACTCAGAATGCTACTTAAGATCCCCAGAAGAAAGGGAAGGAGAATTAAGTCATCCGGTGATGACGAGTGCGGTAGAAGCACAGGT
ACTTCGTGATTTTGCTCGGCAGATAGTTGAGAATTTAAGTAGTTTGTCTAAAAATCCTGAGAGGTTGTATGGAATAGAAAGGTTAAAAGCCTTAGAAGCAAGTACGTTTG
AAGGGACGGTAGATTCCAAAGAAGCAGAGGTATGGATTACTCGATTAGAAAAGTGTTTCCGAATGTCCAGAAGATCGAAAAGTTTCTTTGGTTGTCTTCTTACTCGAAAA
AGGAGCAAAAGACTGGTGACGACCTCGTCAGCAACGTGCAAGCAACACTCAGAATGCTACTTAAGATCCCCAGAAGAAAGGGAAGGAGAATTAAGTCATCCGGTGATGAC
GAGTGCGGTAGAAGCACAGGTACTTCGTGATTTTGCTCGGCAGATAGTTGAGAATTTAAGTAGTTTGTCTAAAAATCCTGAGAGGTTGTATGGAATAGAAAGGTTAAAAG
CCTTAGAAGCAAGTACGTTTGAAGGGACGGTAGATTCCAAAGAAGCAGAGGTATGGATTACTCGATTAGAAAAGTGTTTCCGAGTAATAAGATGTCCAGAAGATCGAAAA
GTTTCTTTGGTTGTCTTCTTACTCGAAAAAGGAGCAAAAGACTGGTGA
Protein sequenceShow/hide protein sequence
TSSATCKQHSECYLRSPEEREGELSHPVMTSAVEAQVLRDFARQIVENLSSLSKNPERLYGIERLKALEASTFEGTVDSKEAEVWITRLEKCFRMSRRSKSFFGCLLTRK
RSKRLVTTSSATCKQHSECYLRSPEEREGELSHPVMTSAVEAQVLRDFARQIVENLSSLSKNPERLYGIERLKALEASTFEGTVDSKEAEVWITRLEKCFRVIRCPEDRK
VSLVVFLLEKGAKDW