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ClCG09G015660 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG09G015660
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionDNA helicase
Genome locationCG_Chr09:30466037..30466761
RNA-Seq ExpressionClCG09G015660
SyntenyClCG09G015660
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0032508 - DNA duplex unwinding (biological process)
GO:0005634 - nucleus (cellular component)
GO:0042555 - MCM complex (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0017116 - single-stranded DNA helicase activity (molecular function)
InterPro domainsIPR001208 - MCM domain
IPR027417 - P-loop containing nucleoside triphosphate hydrolase
IPR031327 - Mini-chromosome maintenance protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7011539.1 putative DNA helicase MCM9, partial [Cucurbita argyrosperma subsp. argyrosperma]6.6e-4196.55Show/hide
Query:  IRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP
        +RRTNELKAEVDIPDDIIM FRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVD+SGTKVRGESHLLLVGDP
Subjt:  IRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP

XP_023554772.1 probable DNA helicase MCM9 [Cucurbita pepo subsp. pepo]6.6e-4196.55Show/hide
Query:  IRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP
        +RRTNELKAEVDIPDDIIM FRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVD+SGTKVRGESHLLLVGDP
Subjt:  IRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP

XP_038886880.1 probable DNA helicase MCM9 isoform X1 [Benincasa hispida]1.3e-4198.85Show/hide
Query:  IRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP
        +RRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP
Subjt:  IRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP

XP_038886881.1 probable DNA helicase MCM9 isoform X2 [Benincasa hispida]1.3e-4198.85Show/hide
Query:  IRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP
        +RRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP
Subjt:  IRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP

XP_038886882.1 probable DNA helicase MCM9 isoform X3 [Benincasa hispida]1.3e-4198.85Show/hide
Query:  IRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP
        +RRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP
Subjt:  IRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP

TrEMBL top hitse value%identityAlignment
A0A0A0K618 DNA helicase9.3e-4196.55Show/hide
Query:  IRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP
        +RRTNELKAEVDIPDDIIM+F QFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP
Subjt:  IRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP

A0A5A7SLG2 DNA helicase1.2e-4096.55Show/hide
Query:  IRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP
        +RRTNELKAEVDIPDDIIMKF QFWS+FKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP
Subjt:  IRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP

A0A5D3C4S8 DNA helicase1.2e-4096.55Show/hide
Query:  IRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP
        +RRTNELKAEVDIPDDIIMKF QFWS+FKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP
Subjt:  IRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP

A0A6J1GLI2 DNA helicase3.2e-4196.55Show/hide
Query:  IRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP
        +RRTNELKAEVDIPDDIIM FRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVD+SGTKVRGESHLLLVGDP
Subjt:  IRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP

A0A6J1I4M2 DNA helicase3.2e-4196.55Show/hide
Query:  IRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP
        +RRTNELKAEVDIPDDIIM FRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVD+SGTKVRGESHLLLVGDP
Subjt:  IRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP

SwissProt top hitse value%identityAlignment
B8B406 Probable DNA helicase MCM91.6e-3468.32Show/hide
Query:  DISKSIQPYVI----RRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGD
        D+  ++ P +I    RRTNELK+++DIP +II KF +FW+  + TPLKGRN+IL+GICPQ++GLFTVKLAVALTLIGGVQHVD SGTKVRGE H+LLVGD
Subjt:  DISKSIQPYVI----RRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGD

Query:  P
        P
Subjt:  P

F1QDI9 DNA helicase MCM92.9e-2352.58Show/hide
Query:  DISKSIQPYVIRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP
        D+   ++   I   NE      + +DI  +F +FW   K  P+ GRN IL  +CPQVFG++ VKLAVA+ L GGVQ +D SGTKVRGESHLLLVGDP
Subjt:  DISKSIQPYVIRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP

F4IFF3 Probable DNA helicase MCM91.3e-3974.53Show/hide
Query:  SYSSSDISKSIQPYVI----RRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHL
        S+   D+   ++P +I    RRTNELK+E+DI DD+I KF+ FWS F+DTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVD SGTKVRGESHL
Subjt:  SYSSSDISKSIQPYVI----RRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHL

Query:  LLVGDP
        LL+GDP
Subjt:  LLVGDP

I0IUP4 DNA helicase MCM92.9e-2350.52Show/hide
Query:  DISKSIQPYVIRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP
        D+   ++   ++  NE  A V I +++  +F  FW   ++ PL GRN IL  +CPQVFGL+ VKLAVA+ L GGVQ +D +GT++RGESHLLLVGDP
Subjt:  DISKSIQPYVIRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP

Q69QA6 Probable DNA helicase MCM91.6e-3468.32Show/hide
Query:  DISKSIQPYVI----RRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGD
        D+  ++ P +I    RRTNELK+++DIP +II KF +FW+  + TPLKGRN+IL+GICPQ++GLFTVKLAVALTLIGGVQHVD SGTKVRGE H+LLVGD
Subjt:  DISKSIQPYVI----RRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGD

Query:  P
        P
Subjt:  P

Arabidopsis top hitse value%identityAlignment
AT2G14050.1 minichromosome maintenance 99.2e-4174.53Show/hide
Query:  SYSSSDISKSIQPYVI----RRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHL
        S+   D+   ++P +I    RRTNELK+E+DI DD+I KF+ FWS F+DTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVD SGTKVRGESHL
Subjt:  SYSSSDISKSIQPYVI----RRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHL

Query:  LLVGDP
        LL+GDP
Subjt:  LLVGDP

AT4G02060.1 Minichromosome maintenance (MCM2/3/5) family protein1.1e-0435.29Show/hide
Query:  NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP
        N + R + P+++G   +K A+ L L+G        G K+RG+ H+ L+GDP
Subjt:  NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP

AT4G02060.2 Minichromosome maintenance (MCM2/3/5) family protein1.1e-0435.29Show/hide
Query:  NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP
        N + R + P+++G   +K A+ L L+G        G K+RG+ H+ L+GDP
Subjt:  NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP

AT5G44635.1 minichromosome maintenance (MCM2/3/5) family protein1.1e-0439.22Show/hide
Query:  NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP
        N ++  + P VFG   +K AV L L+GGV      G  +RG+ ++ +VGDP
Subjt:  NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP

AT5G46280.1 Minichromosome maintenance (MCM2/3/5) family protein6.2e-0536.73Show/hide
Query:  ILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP
        + R + P ++G   +K AV L ++GGV+    +GT +RG+ ++++VGDP
Subjt:  ILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCATAATTCACTCTCTTATGAAATTCCAAAAAACATAAACCTTGTGTCCTCTTACTCCTCTAGTGACATTTCCAAAAGTATTCAACCTTATGTGATACGA
AGAACCAATGAACTAAAGGCTGAGGTTGACATCCCTGATGATATAATTATGAAATTTAGGCAGTTCTGGTCAGATTTCAAAGACACTCCTTTAAAAGGAAGAAAT
GCCATTTTGAGAGGCATATGCCCTCAAGTGTTTGGACTTTTTACTGTAAAACTTGCAGTGGCTTTAACACTCATTGGAGGTGTACAACATGTGGATATTTCTGGT
ACTAAAGTTCGAGGAGAATCTCATCTACTGTTGGTTGGTGATCCG
mRNA sequenceShow/hide mRNA sequence
ATGTCCCATAATTCACTCTCTTATGAAATTCCAAAAAACATAAACCTTGTGTCCTCTTACTCCTCTAGTGACATTTCCAAAAGTATTCAACCTTATGTGATACGA
AGAACCAATGAACTAAAGGCTGAGGTTGACATCCCTGATGATATAATTATGAAATTTAGGCAGTTCTGGTCAGATTTCAAAGACACTCCTTTAAAAGGAAGAAAT
GCCATTTTGAGAGGCATATGCCCTCAAGTGTTTGGACTTTTTACTGTAAAACTTGCAGTGGCTTTAACACTCATTGGAGGTGTACAACATGTGGATATTTCTGGT
ACTAAAGTTCGAGGAGAATCTCATCTACTGTTGGTTGGTGATCCG
Protein sequenceShow/hide protein sequence
MSHNSLSYEIPKNINLVSSYSSSDISKSIQPYVIRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISG
TKVRGESHLLLVGDP