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ClCG09G015910 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG09G015910
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotransposon protein
Genome locationCG_Chr09:30989370..30995835
RNA-Seq ExpressionClCG09G015910
SyntenyClCG09G015910
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033896.1 retrotransposon protein [Cucumis melo var. makuwa]2.1e-0434.45Show/hide
Query:  LSDEEKLIVTSTTFTRAALQWYYWTGGRQPFECWRDLK----EQFEAL-SAPLPRLAEEI-------------------HH---FGKCTPTAE-KESPMK
        L+DEEK+ V   +F   AL W+ W+  R+    W DLK    E F+A   APLP ++E +                   HH      C   A+  ES +K
Subjt:  LSDEEKLIVTSTTFTRAALQWYYWTGGRQPFECWRDLK----EQFEAL-SAPLPRLAEEI-------------------HH---FGKCTPTAE-KESPMK

Query:  HLLDAKLEARKAKGLCFRC
         L D++  AR  KGLCF C
Subjt:  HLLDAKLEARKAKGLCFRC

RVW46246.1 hypothetical protein CK203_086679 [Vitis vinifera]5.0e-0633.67Show/hide
Query:  LSDEEKLIVTSTTFTRAALQWYYWTGGRQPFECWRD-----LKEQFEALSAPLPRLAEE--IHHFGKCTPTAEKESPMKHLLDAKLEARKAKGLCFRC
        L + EKL+ T+ +    AL WY WTG R+ F   +       + +FE +  PL  +++E  +    + T    +E P+K L++++L+ARK K LCF+C
Subjt:  LSDEEKLIVTSTTFTRAALQWYYWTGGRQPFECWRD-----LKEQFEALSAPLPRLAEE--IHHFGKCTPTAEKESPMKHLLDAKLEARKAKGLCFRC

WP_217833383.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]1.1e-0578.05Show/hide
Query:  KQVEKGGEKLDGKIPINRTLKEKERLMTLKEEFWREREEKR
        KQV K GEKLD K+PINRTL+EKERLMTLKEEFWRE+  K+
Subjt:  KQVEKGGEKLDGKIPINRTLKEKERLMTLKEEFWREREEKR

TrEMBL top hitse value%identityAlignment
A0A438EEK2 Uncharacterized protein2.4e-0633.67Show/hide
Query:  LSDEEKLIVTSTTFTRAALQWYYWTGGRQPFECWRD-----LKEQFEALSAPLPRLAEE--IHHFGKCTPTAEKESPMKHLLDAKLEARKAKGLCFRC
        L + EKL+ T+ +    AL WY WTG R+ F   +       + +FE +  PL  +++E  +    + T    +E P+K L++++L+ARK K LCF+C
Subjt:  LSDEEKLIVTSTTFTRAALQWYYWTGGRQPFECWRD-----LKEQFEALSAPLPRLAEE--IHHFGKCTPTAEKESPMKHLLDAKLEARKAKGLCFRC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTTCATGATGAATATGGTGGAAGCTGAGCTGGACTTGCCTTTAATCAATGATGTTGTAAAGGAGGGTGGACCTAGAGTTCCAAATCTAAGGAGGATTAGG
CAATGTAAATTCGAGTTGGCCGATGAAGAATTCACAAATGTAAAGTTTAGAGTGGCAGTCCAGGGAAAATCAAACAAGATGACACAGCGACAACTCTTAGAAAGT
GTCGAGGAGTCTGAGCGAACGTTGACGGAAGTAAGGGAAGATCTTCAGATGTTGCCTGAGATGGATAAGGCGGTGAAAGAGATTATGGACAACATGAATAGACTG
TTGCAACAAATGGAGGAGCAGAAGAAAGAATCAGTTAATAATCCAAAGAATGTGAGCCTCATGTTTCGTAACTTCGTAGAACAAAAGGAAATGTTAGAGGAGACA
TGGAGAGCAATATCTCCACTATCTAAAGGAATTTCTCGATTCTCATCCTCTGAGGAGAGAACCGACCATCCAAACACCCCGAAGAGGAAGGTGAGATGTCGATTG
AAGGTGAGAACAGTAGTGGCAGAACACAGAGGACAAAAACTAAAGATGGTTATGCTAATCATACTTTCTGATGAGGAGAAACTTATAGTGACTTCTACTACCTTT
ACGAGAGCTGCCCTGCAATGGTATTATTGGACCGGAGGCAGACAACCCTTTGAGTGTTGGCGAGACTTGAAGGAGCAGTTCGAGGCTTTGTCGGCCCCCCTACCT
CGTCTGGCAGAGGAGATCCATCACTTTGGCAAGTGCACCCCTACTGCTGAAAAGGAATCCCCTATGAAACATCTTTTGGATGCAAAGCTTGAGGCAAGGAAGGCG
AAAGGCCTCTGCTTTCGTTGTGCAAGAATTTTACGCGTGACATGTGGCAAACAAGTGGAAAAAGGAGGGGAGAAGTTGGATGGCAAGATCCCTATAAATAGAACC
TTGAAGGAAAAGGAGAGACTGATGACTCTAAAAGAAGAATTTTGGAGAGAAAGGGAAGAAAAAAGGCAGAAAGGAGGAATCCTTGCGTCCGTAGGAGTCTGCGAC
CAAGAGAGAAGGGTTGTGTCCGATCGAGCTGACAGAGAAATATGGAGCCTTGCGTTTTTGAGATTAGAATGCTGCGTCCAAGAAGCTCGGGAAGAGGAAATAGAG
GAAAGGAAGAGGAATTATTATTTGGCAAGTACAGGCACCCAAGGCTCAGGGACTTGGAGAAGGCCAAAGGGTAGCCGGTATATAGAAATGAGACCCCAATGCTCA
GGGACTCGTAGAAGGCATTGTGGGCGGCTCGAACTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTTTCATGATGAATATGGTGGAAGCTGAGCTGGACTTGCCTTTAATCAATGATGTTGTAAAGGAGGGTGGACCTAGAGTTCCAAATCTAAGGAGGATTAGG
CAATGTAAATTCGAGTTGGCCGATGAAGAATTCACAAATGTAAAGTTTAGAGTGGCAGTCCAGGGAAAATCAAACAAGATGACACAGCGACAACTCTTAGAAAGT
GTCGAGGAGTCTGAGCGAACGTTGACGGAAGTAAGGGAAGATCTTCAGATGTTGCCTGAGATGGATAAGGCGGTGAAAGAGATTATGGACAACATGAATAGACTG
TTGCAACAAATGGAGGAGCAGAAGAAAGAATCAGTTAATAATCCAAAGAATGTGAGCCTCATGTTTCGTAACTTCGTAGAACAAAAGGAAATGTTAGAGGAGACA
TGGAGAGCAATATCTCCACTATCTAAAGGAATTTCTCGATTCTCATCCTCTGAGGAGAGAACCGACCATCCAAACACCCCGAAGAGGAAGGTGAGATGTCGATTG
AAGGTGAGAACAGTAGTGGCAGAACACAGAGGACAAAAACTAAAGATGGTTATGCTAATCATACTTTCTGATGAGGAGAAACTTATAGTGACTTCTACTACCTTT
ACGAGAGCTGCCCTGCAATGGTATTATTGGACCGGAGGCAGACAACCCTTTGAGTGTTGGCGAGACTTGAAGGAGCAGTTCGAGGCTTTGTCGGCCCCCCTACCT
CGTCTGGCAGAGGAGATCCATCACTTTGGCAAGTGCACCCCTACTGCTGAAAAGGAATCCCCTATGAAACATCTTTTGGATGCAAAGCTTGAGGCAAGGAAGGCG
AAAGGCCTCTGCTTTCGTTGTGCAAGAATTTTACGCGTGACATGTGGCAAACAAGTGGAAAAAGGAGGGGAGAAGTTGGATGGCAAGATCCCTATAAATAGAACC
TTGAAGGAAAAGGAGAGACTGATGACTCTAAAAGAAGAATTTTGGAGAGAAAGGGAAGAAAAAAGGCAGAAAGGAGGAATCCTTGCGTCCGTAGGAGTCTGCGAC
CAAGAGAGAAGGGTTGTGTCCGATCGAGCTGACAGAGAAATATGGAGCCTTGCGTTTTTGAGATTAGAATGCTGCGTCCAAGAAGCTCGGGAAGAGGAAATAGAG
GAAAGGAAGAGGAATTATTATTTGGCAAGTACAGGCACCCAAGGCTCAGGGACTTGGAGAAGGCCAAAGGGTAGCCGGTATATAGAAATGAGACCCCAATGCTCA
GGGACTCGTAGAAGGCATTGTGGGCGGCTCGAACTCTAG
Protein sequenceShow/hide protein sequence
MCFMMNMVEAELDLPLINDVVKEGGPRVPNLRRIRQCKFELADEEFTNVKFRVAVQGKSNKMTQRQLLESVEESERTLTEVREDLQMLPEMDKAVKEIMDNMNRL
LQQMEEQKKESVNNPKNVSLMFRNFVEQKEMLEETWRAISPLSKGISRFSSSEERTDHPNTPKRKVRCRLKVRTVVAEHRGQKLKMVMLIILSDEEKLIVTSTTF
TRAALQWYYWTGGRQPFECWRDLKEQFEALSAPLPRLAEEIHHFGKCTPTAEKESPMKHLLDAKLEARKAKGLCFRCARILRVTCGKQVEKGGEKLDGKIPINRT
LKEKERLMTLKEEFWREREEKRQKGGILASVGVCDQERRVVSDRADREIWSLAFLRLECCVQEAREEEIEERKRNYYLASTGTQGSGTWRRPKGSRYIEMRPQCS
GTRRRHCGRLEL