CuGenDBv2

Gene ID	ClCG09G016190
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	RNA polymerase sigma factor
Genome location	CG_Chr09:31753163..31761353
RNA-Seq Expression	ClCG09G016190
Synteny	ClCG09G016190
Gene Ontology terms	GO:0045893 - positive regulation of transcription, DNA-templated (biological process) GO:0071483 - cellular response to blue light (biological process) GO:0090351 - seedling development (biological process) GO:2000142 - regulation of DNA-templated transcription, initiation (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0016987 - sigma factor activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7034557.1 RNA polymerase sigma factor sigF, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

1.3e-16

82.14

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Query:  MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL
        MILDNVK RLQSQFGREPTLVEWAEALGLTCQ L SQ HSF + REKLINANL+++
Subjt:  MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL

XP_022926086.1 RNA polymerase sigma factor sigF, chloroplastic-like [Cucurbita moschata]

1.3e-16

82.14

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Query:  MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL
        MILDNVK RLQSQFGREPTLVEWAEALGLTCQ L SQ HSF + REKLINANL+++
Subjt:  MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL

XP_022978801.1 RNA polymerase sigma factor sigF, chloroplastic [Cucurbita maxima]

1.3e-16

82.14

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Query:  MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL
        MILDNVK RLQSQFGREPTLVEWAEALGLTCQ L SQ HSF + REKLINANL+++
Subjt:  MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL

XP_023543698.1 RNA polymerase sigma factor sigF, chloroplastic [Cucurbita pepo subsp. pepo]

1.3e-16

82.14

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Query:  MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL
        MILDNVK RLQSQFGREPTLVEWAEALGLTCQ L SQ HSF + REKLINANL+++
Subjt:  MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL

XP_038882876.1 RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida]

2.8e-16

83.93

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Query:  MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL
        MILDNVKARLQSQFGREPTLVEWAEALGLTCQ L SQ  SF I REKLINANL+++
Subjt:  MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E3S8 RNA polymerase sigma factor sigF, chloroplastic isoform X1

2.4e-16

80.36

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Query:  MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL
        MILDNVKA+LQSQFGREPTLVEWAEALG+TCQ L SQ HSF   REKLINANL+++
Subjt:  MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL

A0A5A7V893 RNA polymerase sigma factor sigF

2.4e-16

80.36

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Query:  MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL
        MILDNVKA+LQSQFGREPTLVEWAEALG+TCQ L SQ HSF   REKLINANL+++
Subjt:  MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL

A0A5D3CAF4 RNA polymerase sigma factor

2.4e-16

80.36

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Query:  MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL
        MILDNVKA+LQSQFGREPTLVEWAEALG+TCQ L SQ HSF   REKLINANL+++
Subjt:  MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL

A0A6J1EDW3 RNA polymerase sigma factor sigF, chloroplastic-like

6.2e-17

82.14

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Query:  MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL
        MILDNVK RLQSQFGREPTLVEWAEALGLTCQ L SQ HSF + REKLINANL+++
Subjt:  MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL

A0A6J1IP18 RNA polymerase sigma factor sigF, chloroplastic

6.2e-17

82.14

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Query:  MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL
        MILDNVK RLQSQFGREPTLVEWAEALGLTCQ L SQ HSF + REKLINANL+++
Subjt:  MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL

SwissProt top hits

e value

%identity

Alignment

Q9LD95 RNA polymerase sigma factor sigF, chloroplastic

1.9e-07

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Query:  LDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL
        L+ VK +L+SQ G EPT+ EWAEA+G++   L S  H     REKLI ANL+++
Subjt:  LDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL

Arabidopsis top hits

e value

%identity

Alignment

AT2G36990.1 RNApolymerase sigma-subunit F

1.4e-08

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Query:  LDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL
        L+ VK +L+SQ G EPT+ EWAEA+G++   L S  H     REKLI ANL+++
Subjt:  LDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQIL

Sequences

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CDS sequence

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ATGATACTGGACAATGTGAAAGCTAGACTTCAGTCTCAGTTTGGCCGTGAACCTACTTTGGTTGAATGGGCAGAAGCTCTAGGGCTTACTTGTCAAGGCTTATCGTCACA
GTTTCACTCCTTTTGGATCGGTCGTGAAAAGCTGATTAATGCAAATTTGCAAATCCTTTCTTCCAAGAGATCTGAGTTGACAAATGACGAAAGTGATTTGAGTAAGGATG
AATTCTTTCTGAAATTCTTCCCGGAAGAATGCTTGGGATATGGTTTCAGTAATCTTGATCTAAGCCTTGAACTCTTAGCTGTCAAATTAGAAGCACGGGAGAACTTAGAC
TTAATTTTTGCTTTGGGATTAGGTAATCGTGTTAGTGCAATTTCATCGAAATTCTCCAAGTTAATCACTAAGGGAACCTCTGACTTTTCATTATCTGGGGAGAGGAATGC
CTCTCTTGCAGTGGCAGAGAAGACGAAGGGCCAGAAGAATATGAACCGTTGTCTAAATATCTTTCTTTTAATAAAGCCTTTTGAATTGTCTTAA

mRNA sequence

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Protein sequence

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MILDNVKARLQSQFGREPTLVEWAEALGLTCQGLSSQFHSFWIGREKLINANLQILSSKRSELTNDESDLSKDEFFLKFFPEECLGYGFSNLDLSLELLAVKLEARENLD
LIFALGLGNRVSAISSKFSKLITKGTSDFSLSGERNASLAVAEKTKGQKNMNRCLNIFLLIKPFELS

ClCG09G016190 (gene) of Watermelon (Charleston Gray) v2.5 genome