CuGenDBv2

Gene ID	ClCG09G017010
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	CG_Chr09:33456144..33463257
RNA-Seq Expression	ClCG09G017010
Synteny	ClCG09G017010
Gene Ontology terms	GO:0048519 - negative regulation of biological process (biological process) GO:0110165 - cellular anatomical structure (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

CAN72837.1 hypothetical protein VITISV_031500 [Vitis vinifera]

6.2e-23

37.36

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Query:  LLFAYDTLLFSTNNERKIDKLINLISLFEDASGL--NINRSELLGINCEEDWVGNIALKYDCKGVIGRLHTWGSLCL-------PTSLSFWQPVMDKINK
        L FA DT+LF++  E ++  L +L+ +F   SGL  N+++S L GIN +++ +  +AL  DCK        W  L L       PT+  FW PV+++I++
Subjt:  LLFAYDTLLFSTNNERKIDKLINLISLFEDASGL--NINRSELLGINCEEDWVGNIALKYDCKGVIGRLHTWGSLCL-------PTSLSFWQPVMDKINK

Query:  WLHSCQHSFLSKGGSLTLLNATLSVSNQPIYSLSLYYVPAKVVEDIDKCFRTFLWSGYRGSKLSHVMKWDNLNKPLEDEGWG
         L   Q ++LS GG +TLL++ L  S+ P Y LSL+ +PA V   I++  R FLWSG    K  H+++W+ + KP    G G
Subjt:  WLHSCQHSFLSKGGSLTLLNATLSVSNQPIYSLSLYYVPAKVVEDIDKCFRTFLWSGYRGSKLSHVMKWDNLNKPLEDEGWG

RVW33139.1 putative ribonuclease H protein [Vitis vinifera]

1.8e-22

37.36

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Query:  LLFAYDTLLFSTNNERKIDKLINLISLFEDASGL--NINRSELLGINCEEDWVGNIALKYDCKGVIGRLHTWGSLCL-------PTSLSFWQPVMDKINK
        L FA DT+LF+ ++E ++  L +L+ +F   SGL  N+++S L GIN +++ +  +AL  DCK        W  L L       PT+  FW PV+++I++
Subjt:  LLFAYDTLLFSTNNERKIDKLINLISLFEDASGL--NINRSELLGINCEEDWVGNIALKYDCKGVIGRLHTWGSLCL-------PTSLSFWQPVMDKINK

Query:  WLHSCQHSFLSKGGSLTLLNATLSVSNQPIYSLSLYYVPAKVVEDIDKCFRTFLWSGYRGSKLSHVMKWDNLNK
         L   Q ++LS GG +TLL++ L  S+ P Y LSL+ +PA V   +++  R FLWSG    K  H+++WD + K
Subjt:  WLHSCQHSFLSKGGSLTLLNATLSVSNQPIYSLSLYYVPAKVVEDIDKCFRTFLWSGYRGSKLSHVMKWDNLNK

RVW59655.1 putative ribonuclease H protein [Vitis vinifera]

1.4e-22

36.81

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Query:  LLFAYDTLLFSTNNERKIDKLINLISLFEDASGL--NINRSELLGINCEEDWVGNIALKYDCKGVIGRLHTWGSLCL-------PTSLSFWQPVMDKINK
        L FA DT+LF++++E ++  L +L+ +F   SGL  N+++S L GIN +++ +  +AL  DCK +      W  L L       PT+  FW PV+ +I++
Subjt:  LLFAYDTLLFSTNNERKIDKLINLISLFEDASGL--NINRSELLGINCEEDWVGNIALKYDCKGVIGRLHTWGSLCL-------PTSLSFWQPVMDKINK

Query:  WLHSCQHSFLSKGGSLTLLNATLSVSNQPIYSLSLYYVPAKVVEDIDKCFRTFLWSGYRGSKLSHVMKWDNLNKPLEDEGWG
         L   Q ++LS GG +TLL++ L  S+ P Y LSL+ +PA +   +++  R FLWSG    K  H++ WD + KP    G G
Subjt:  WLHSCQHSFLSKGGSLTLLNATLSVSNQPIYSLSLYYVPAKVVEDIDKCFRTFLWSGYRGSKLSHVMKWDNLNKPLEDEGWG

RVW70297.1 putative ribonuclease H protein [Vitis vinifera]

1.1e-22

36.81

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Query:  LLFAYDTLLFSTNNERKIDKLINLISLFEDASGL--NINRSELLGINCEEDWVGNIALKYDCKGVIGRLHTWGSLCL-------PTSLSFWQPVMDKINK
        L FA DT+LF++++E ++  L +L+ +F   SGL  N+++S L GIN +++ +  +AL  DCK +      W  L L       PT+  FW PV+ +I++
Subjt:  LLFAYDTLLFSTNNERKIDKLINLISLFEDASGL--NINRSELLGINCEEDWVGNIALKYDCKGVIGRLHTWGSLCL-------PTSLSFWQPVMDKINK

Query:  WLHSCQHSFLSKGGSLTLLNATLSVSNQPIYSLSLYYVPAKVVEDIDKCFRTFLWSGYRGSKLSHVMKWDNLNKPLEDEGWG
         L   Q ++LS GG +TLL++ L  S+ P Y LSL+ +PA +   +++  R FLWSG    K  H++ WD + KP    G G
Subjt:  WLHSCQHSFLSKGGSLTLLNATLSVSNQPIYSLSLYYVPAKVVEDIDKCFRTFLWSGYRGSKLSHVMKWDNLNKPLEDEGWG

RVW97608.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]

5.6e-24

37.91

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Query:  LLFAYDTLLFSTNNERKIDKLINLISLFEDASGL--NINRSELLGINCEEDWVGNIALKYDCKGVIGRLHTWGSLCL-------PTSLSFWQPVMDKINK
        L FA DT+LF+ + E ++  L +L+ +F   SGL  N+++S L GIN +++ +  +AL  DCK        W  L L       PT+  FW PV+++I++
Subjt:  LLFAYDTLLFSTNNERKIDKLINLISLFEDASGL--NINRSELLGINCEEDWVGNIALKYDCKGVIGRLHTWGSLCL-------PTSLSFWQPVMDKINK

Query:  WLHSCQHSFLSKGGSLTLLNATLSVSNQPIYSLSLYYVPAKVVEDIDKCFRTFLWSGYRGSKLSHVMKWDNLNKPLEDEGWG
         L   Q ++LS GG +TLL++ L  S+ P Y LSL+ +PA VV  +++  R FLWSG    K  H+++WD + KP    G G
Subjt:  WLHSCQHSFLSKGGSLTLLNATLSVSNQPIYSLSLYYVPAKVVEDIDKCFRTFLWSGYRGSKLSHVMKWDNLNKPLEDEGWG

TrEMBL top hits

e value

%identity

Alignment

A0A438DCF5 Putative ribonuclease H protein

8.7e-23

37.36

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Query:  LLFAYDTLLFSTNNERKIDKLINLISLFEDASGL--NINRSELLGINCEEDWVGNIALKYDCKGVIGRLHTWGSLCL-------PTSLSFWQPVMDKINK
        L FA DT+LF+ ++E ++  L +L+ +F   SGL  N+++S L GIN +++ +  +AL  DCK        W  L L       PT+  FW PV+++I++
Subjt:  LLFAYDTLLFSTNNERKIDKLINLISLFEDASGL--NINRSELLGINCEEDWVGNIALKYDCKGVIGRLHTWGSLCL-------PTSLSFWQPVMDKINK

Query:  WLHSCQHSFLSKGGSLTLLNATLSVSNQPIYSLSLYYVPAKVVEDIDKCFRTFLWSGYRGSKLSHVMKWDNLNK
         L   Q ++LS GG +TLL++ L  S+ P Y LSL+ +PA V   +++  R FLWSG    K  H+++WD + K
Subjt:  WLHSCQHSFLSKGGSLTLLNATLSVSNQPIYSLSLYYVPAKVVEDIDKCFRTFLWSGYRGSKLSHVMKWDNLNK

A0A438FI32 Putative ribonuclease H protein

6.7e-23

36.81

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Query:  LLFAYDTLLFSTNNERKIDKLINLISLFEDASGL--NINRSELLGINCEEDWVGNIALKYDCKGVIGRLHTWGSLCL-------PTSLSFWQPVMDKINK
        L FA DT+LF++++E ++  L +L+ +F   SGL  N+++S L GIN +++ +  +AL  DCK +      W  L L       PT+  FW PV+ +I++
Subjt:  LLFAYDTLLFSTNNERKIDKLINLISLFEDASGL--NINRSELLGINCEEDWVGNIALKYDCKGVIGRLHTWGSLCL-------PTSLSFWQPVMDKINK

Query:  WLHSCQHSFLSKGGSLTLLNATLSVSNQPIYSLSLYYVPAKVVEDIDKCFRTFLWSGYRGSKLSHVMKWDNLNKPLEDEGWG
         L   Q ++LS GG +TLL++ L  S+ P Y LSL+ +PA +   +++  R FLWSG    K  H++ WD + KP    G G
Subjt:  WLHSCQHSFLSKGGSLTLLNATLSVSNQPIYSLSLYYVPAKVVEDIDKCFRTFLWSGYRGSKLSHVMKWDNLNKPLEDEGWG

A0A438GDL2 Putative ribonuclease H protein

5.1e-23

36.81

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Query:  LLFAYDTLLFSTNNERKIDKLINLISLFEDASGL--NINRSELLGINCEEDWVGNIALKYDCKGVIGRLHTWGSLCL-------PTSLSFWQPVMDKINK
        L FA DT+LF++++E ++  L +L+ +F   SGL  N+++S L GIN +++ +  +AL  DCK +      W  L L       PT+  FW PV+ +I++
Subjt:  LLFAYDTLLFSTNNERKIDKLINLISLFEDASGL--NINRSELLGINCEEDWVGNIALKYDCKGVIGRLHTWGSLCL-------PTSLSFWQPVMDKINK

Query:  WLHSCQHSFLSKGGSLTLLNATLSVSNQPIYSLSLYYVPAKVVEDIDKCFRTFLWSGYRGSKLSHVMKWDNLNKPLEDEGWG
         L   Q ++LS GG +TLL++ L  S+ P Y LSL+ +PA +   +++  R FLWSG    K  H++ WD + KP    G G
Subjt:  WLHSCQHSFLSKGGSLTLLNATLSVSNQPIYSLSLYYVPAKVVEDIDKCFRTFLWSGYRGSKLSHVMKWDNLNKPLEDEGWG

A0A438ILL8 Transposon TX1 uncharacterized 149 kDa protein

2.7e-24

37.91

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Query:  LLFAYDTLLFSTNNERKIDKLINLISLFEDASGL--NINRSELLGINCEEDWVGNIALKYDCKGVIGRLHTWGSLCL-------PTSLSFWQPVMDKINK
        L FA DT+LF+ + E ++  L +L+ +F   SGL  N+++S L GIN +++ +  +AL  DCK        W  L L       PT+  FW PV+++I++
Subjt:  LLFAYDTLLFSTNNERKIDKLINLISLFEDASGL--NINRSELLGINCEEDWVGNIALKYDCKGVIGRLHTWGSLCL-------PTSLSFWQPVMDKINK

Query:  WLHSCQHSFLSKGGSLTLLNATLSVSNQPIYSLSLYYVPAKVVEDIDKCFRTFLWSGYRGSKLSHVMKWDNLNKPLEDEGWG
         L   Q ++LS GG +TLL++ L  S+ P Y LSL+ +PA VV  +++  R FLWSG    K  H+++WD + KP    G G
Subjt:  WLHSCQHSFLSKGGSLTLLNATLSVSNQPIYSLSLYYVPAKVVEDIDKCFRTFLWSGYRGSKLSHVMKWDNLNKPLEDEGWG

A5BYB2 Reverse transcriptase domain-containing protein

3.0e-23

37.36

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Query:  LLFAYDTLLFSTNNERKIDKLINLISLFEDASGL--NINRSELLGINCEEDWVGNIALKYDCKGVIGRLHTWGSLCL-------PTSLSFWQPVMDKINK
        L FA DT+LF++  E ++  L +L+ +F   SGL  N+++S L GIN +++ +  +AL  DCK        W  L L       PT+  FW PV+++I++
Subjt:  LLFAYDTLLFSTNNERKIDKLINLISLFEDASGL--NINRSELLGINCEEDWVGNIALKYDCKGVIGRLHTWGSLCL-------PTSLSFWQPVMDKINK

Query:  WLHSCQHSFLSKGGSLTLLNATLSVSNQPIYSLSLYYVPAKVVEDIDKCFRTFLWSGYRGSKLSHVMKWDNLNKPLEDEGWG
         L   Q ++LS GG +TLL++ L  S+ P Y LSL+ +PA V   I++  R FLWSG    K  H+++W+ + KP    G G
Subjt:  WLHSCQHSFLSKGGSLTLLNATLSVSNQPIYSLSLYYVPAKVVEDIDKCFRTFLWSGYRGSKLSHVMKWDNLNKPLEDEGWG

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

1.3e-07

29.21

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Query:  VMDKINKWLHSCQHSFLSKGGSLTLLNATLSVSNQPIYSLSLYYVPAKVVEDIDKCFRTFLWSGYRGSKLSHVMKWDNLNKPLEDEGWG
        ++++++  +   +   LS  G LTL  A L  S+ P++S+S   +P  ++  +D+  RTFLW      K  H++KW  +  P ++ G G
Subjt:  VMDKINKWLHSCQHSFLSKGGSLTLLNATLSVSNQPIYSLSLYYVPAKVVEDIDKCFRTFLWSGYRGSKLSHVMKWDNLNKPLEDEGWG

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAGAAAAAGTTGGATCCACACTCGTCTGGAACTTTTTGCCTTGGATAATCTTTCCGCATACAATAGTTGGCTTCAGATGGAAGAATTTAACGAGGAGCTAACT
AAAAACTATTTGAATTGGAAAGAGATGATGCAGATTCGTATGTGGACTGAATCAACCTGCAACTTAGACAGTCAAGAAAAGGTCATCCTTCTTTTTGCTTACGAT
ACCTTGCTTTTCTCCACCAATAATGAAAGGAAGATTGATAAACTCATCAATTTGATTAGTCTGTTTGAGGATGCTTCCGGTCTCAATATCAACAGGTCTGAACTC
TTGGGTATCAATTGTGAAGAAGATTGGGTTGGGAATATTGCGTTGAAGTATGATTGTAAGGGGGTCATTGGCCGACTACATACTTGGGGCTCTCTTTGTTTGCCA
ACTTCTTTATCCTTCTGGCAACCTGTTATGGATAAAATTAATAAATGGCTCCACTCTTGCCAACACAGTTTTCTCTCCAAAGGAGGTAGTCTGACACTCTTGAAT
GCCACGCTATCCGTATCCAATCAACCTATTTACTCTTTATCATTATATTATGTTCCAGCAAAAGTTGTTGAGGACATTGATAAGTGTTTTAGGACTTTTCTGTGG
TCAGGTTACAGGGGTAGCAAGTTATCCCATGTAATGAAGTGGGATAATCTTAACAAACCATTGGAAGACGAGGGCTGGGGATCACTGATATTAAACGGTAAAATA
AGGCGTCCCCCTTGCAAAATGGATATGGCGTTTTCACAAGGATGCTCTTCGGAGAATTATGATTAA

mRNA sequence

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GGTGGATTTCTCTGTTTTGAAGTTATTAAATCTACTATTCTCTCAATGTACTCAAGGTGTGGGTCACCTGAAGAAGCTTATCGTTGCTTTTGTAAATTAGACCAA
AAAGACCTCATCTCTTGGACATCAATTATTGCAGTTCACTCTAAGTTTGGGTTAATGAGCAAATGTCTACATTTCTTTTGGGAGATGCAAGCTGGTGAAATAATC
CCGGATGAAATTGTGATCAGTTGCATGCTTATGGGATTTGGTAATTCTGATAGAATTTTTGAAGGAAAAGCCTTCCATGCTTGGATTCTGAAACAGTGTTGTGCA
ATGAGTGGAATAACCCAAAATGCATTACTCTCCATGTATTGTAAGTTTGGACTCTTAGGTACGGTCAATAAGATCTTCCATAGCTTCCATAAAAGCAGTGAAGAT
TGGAACACAATGATATTAGGATATAGCAATATGGGGCTGAATGAAAAGTGTATCGACTTTTTAAGGGAGATGCACCTCTTAGGCAGAAAACCTGATTTGAATAGT
TTAGTTTCAGTCATTTCTTCATGTTTACAAGTTGGAGCTATCAATATTGGTCGGTCCGTTCACTGCTATGTGATTAAAAACTCAATAATTGAAAATGTATCAATA
GCTAACTCGCTCATGGACATGTACGGAAAAAGTGGTAATTTAACTGCCACACGGAGGATATTTCATAGGACACAACAAAGGGATATTATCTCATGGAATACGTTG
ATTTCATCCTACAAGCAAAGTGGGAATCTTGCTGAAGCAATTATTTTATTTGATAAAATGATTGAAGAAAAGGTTTACCCTAATGAAGTTACTTGTGTAATAGTT
CTTTCGGCATGTGCTCATCGTGCATCCTTAGATAAAGGCGAAAAGATCCACCAGTATATAAAGGAAAATGGATTTGAGACCAATATCAATATTAGAACTGCATTG
ATTGATATGTATGCAAAATGTGGGGCGCTCGAGACATCAAGAAAATTGTTCAACTCAATGGAAGAGAGAGATGCTATTTTGTGGAATGTCATGATATCAAATTAT
GGGATTCATGGACATGTAGAATCTGCAATGGAGATCTTCCAACTAATGGAAGAGTCAAATATTAAACCAAATGCACAAACCTTTCTTTCTCTTCTATCAGCTTGT
AATCATACAGGGCATGTGGTAGAAGGAAGGCATCTCTTTGATAGAATGCAGAAATATGGTGTCGAACCTAGTCTGAAGCACTATGCTTCTATGGTAGATCTTCTT
GGCAGGTCAGGTAGTCTTGAAGCAGCCGAAGCTTTGGTTTTATCAATGCCCATCACTCCTGATGGCATTGTTTGGGGTTCCTTGTTAAGTGCATGCAAAATTCAC
AACGAATTTGAAATGGGGGTAAGGATTGCCAGGTATGCAATTGAGTCTGATCCAAAAAATGATGGGTATTATATAATATTGTCTGACCTGTATGGTTGCTTGGGA
AGGTGGGAGGAGGTGGAAAAAGTGCGTGATATGATGAAGGAAAGAGGGGTGGAGAAGAGAGCTGGCTGGAGTGCTCTATGAATGAAGTAATGGCTTTCAGTATTT
CTTGAAAACATTTCATACCTTGAATTATACAACTTCATAGAAATCTCAAATATTATTTCAAGGGCCAAATTTGACAATCAAAATGAGAAAAAGTTGGATCCACAC
TCGTCTGGAACTTTTTGCCTTGGATAATCTTTCCGCATACAATAGTTGGCTTCAGATGGAAGAATTTAACGAGGAGCTAACTAAAAACTATTTGAATTGGAAAGA
GATGATGCAGATTCGTATGTGGACTGAATCAACCTGCAACTTAGACAGTCAAGAAAAGGTCATCCTTCTTTTTGCTTACGATACCTTGCTTTTCTCCACCAATAA
TGAAAGGAAGATTGATAAACTCATCAATTTGATTAGTCTGTTTGAGGATGCTTCCGGTCTCAATATCAACAGGTCTGAACTCTTGGGTATCAATTGTGAAGAAGA
TTGGGTTGGGAATATTGCGTTGAAGTATGATTGTAAGGGGGTCATTGGCCGACTACATACTTGGGGCTCTCTTTGTTTGCCAACTTCTTTATCCTTCTGGCAACC
TGTTATGGATAAAATTAATAAATGGCTCCACTCTTGCCAACACAGTTTTCTCTCCAAAGGAGGTAGTCTGACACTCTTGAATGCCACGCTATCCGTATCCAATCA
ACCTATTTACTCTTTATCATTATATTATGTTCCAGCAAAAGTTGTTGAGGACATTGATAAGTGTTTTAGGACTTTTCTGTGGTCAGGTTACAGGGGTAGCAAGTT
ATCCCATGTAATGAAGTGGGATAATCTTAACAAACCATTGGAAGACGAGGGCTGGGGATCACTGATATTAAACGGTAAAATAAGGCGTCCCCCTTGCAAAATGGA
TATGGCGTTTTCACAAGGATGCTCTTCGGAGAATTATGATTAA

Protein sequence

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MRKSWIHTRLELFALDNLSAYNSWLQMEEFNEELTKNYLNWKEMMQIRMWTESTCNLDSQEKVILLFAYDTLLFSTNNERKIDKLINLISLFEDASGLNINRSEL
LGINCEEDWVGNIALKYDCKGVIGRLHTWGSLCLPTSLSFWQPVMDKINKWLHSCQHSFLSKGGSLTLLNATLSVSNQPIYSLSLYYVPAKVVEDIDKCFRTFLW
SGYRGSKLSHVMKWDNLNKPLEDEGWGSLILNGKIRRPPCKMDMAFSQGCSSENYD

ClCG09G017010 (gene) of Watermelon (Charleston Gray) v2.5 genome