; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG09G017780 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG09G017780
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationCG_Chr09:34762998..34781035
RNA-Seq ExpressionClCG09G017780
SyntenyClCG09G017780
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ETO80384.1 hypothetical protein F444_05107, partial [Phytophthora parasitica P1976]6.7e-0436.59Show/hide
Query:  RRLLAAALGSSTNKESGRNSGQPLILPKINRRIKKRLHLRRHGSIPRRKSKQESVRLHHLLHGNHRHAVVLRRNSHLLQRLQRQRLRHLKQNTFDAVYRI
        RRLLAAAL +   K++GR + Q    P+   R+++ L LR   +  R +++Q++VRL   +H      V+L    HL Q L  +RL HL      AV   
Subjt:  RRLLAAALGSSTNKESGRNSGQPLILPKINRRIKKRLHLRRHGSIPRRKSKQESVRLHHLLHGNHRHAVVLRRNSHLLQRLQRQRLRHLKQNTFDAVYRI

Query:  DSFLHHLRQEMDVTVHGVIDDED
        D+ L  L +  DV + GV+DD D
Subjt:  DSFLHHLRQEMDVTVHGVIDDED

GER56671.1 DNA-directed RNA polymerase subunit beta' [Striga asiatica]1.9e-0634.81Show/hide
Query:  RRLLAAALGSSTNKESGRNSGQPLILPKINRRIKKRLHLRRHGSIPRRKSKQESVRLHHLL-HGNHRHAVVLRRNSHLLQRLQRQRLRHLKQNTFDAVYR
        + ++   L    +KE  R + + L+LP++   IK+ LHLR H S+PRR+ +QE +R   +    +H   +VL R  HL++ + R+RLRH  Q   D V+ 
Subjt:  RRLLAAALGSSTNKESGRNSGQPLILPKINRRIKKRLHLRRHGSIPRRKSKQESVRLHHLL-HGNHRHAVVLRRNSHLLQRLQRQRLRHLKQNTFDAVYR

Query:  IDSFLHHLRQEMDVTVHGVIDDEDPEISGDFSGSG
        + S LH   Q + V VH         +S  F GSG
Subjt:  IDSFLHHLRQEMDVTVHGVIDDEDPEISGDFSGSG

TrEMBL top hitse value%identityAlignment
A0A081ANC3 Uncharacterized protein (Fragment)3.2e-0436.59Show/hide
Query:  RRLLAAALGSSTNKESGRNSGQPLILPKINRRIKKRLHLRRHGSIPRRKSKQESVRLHHLLHGNHRHAVVLRRNSHLLQRLQRQRLRHLKQNTFDAVYRI
        RRLLAAAL +   K++GR + Q    P+   R+++ L LR   +  R +++Q++VRL   +H      V+L    HL Q L  +RL HL      AV   
Subjt:  RRLLAAALGSSTNKESGRNSGQPLILPKINRRIKKRLHLRRHGSIPRRKSKQESVRLHHLLHGNHRHAVVLRRNSHLLQRLQRQRLRHLKQNTFDAVYRI

Query:  DSFLHHLRQEMDVTVHGVIDDED
        D+ L  L +  DV + GV+DD D
Subjt:  DSFLHHLRQEMDVTVHGVIDDED

A0A5A7RHP5 DNA-directed RNA polymerase subunit beta9.1e-0734.81Show/hide
Query:  RRLLAAALGSSTNKESGRNSGQPLILPKINRRIKKRLHLRRHGSIPRRKSKQESVRLHHLL-HGNHRHAVVLRRNSHLLQRLQRQRLRHLKQNTFDAVYR
        + ++   L    +KE  R + + L+LP++   IK+ LHLR H S+PRR+ +QE +R   +    +H   +VL R  HL++ + R+RLRH  Q   D V+ 
Subjt:  RRLLAAALGSSTNKESGRNSGQPLILPKINRRIKKRLHLRRHGSIPRRKSKQESVRLHHLL-HGNHRHAVVLRRNSHLLQRLQRQRLRHLKQNTFDAVYR

Query:  IDSFLHHLRQEMDVTVHGVIDDEDPEISGDFSGSG
        + S LH   Q + V VH         +S  F GSG
Subjt:  IDSFLHHLRQEMDVTVHGVIDDEDPEISGDFSGSG

W2ZPM5 Uncharacterized protein (Fragment)9.4e-0435.77Show/hide
Query:  RRLLAAALGSSTNKESGRNSGQPLILPKINRRIKKRLHLRRHGSIPRRKSKQESVRLHHLLHGNHRHAVVLRRNSHLLQRLQRQRLRHLKQNTFDAVYRI
        RRLLAAAL +   K++GR + Q    P+   R+++ L LR   +  R +++Q++VRL   +H      V+L    HL Q L  +R  HL      AV   
Subjt:  RRLLAAALGSSTNKESGRNSGQPLILPKINRRIKKRLHLRRHGSIPRRKSKQESVRLHHLLHGNHRHAVVLRRNSHLLQRLQRQRLRHLKQNTFDAVYRI

Query:  DSFLHHLRQEMDVTVHGVIDDED
        D+ L  L +  DV + GV+DD D
Subjt:  DSFLHHLRQEMDVTVHGVIDDED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAACAACTTACGCCGTCGTCTCTTGGCCGCCGCCTTGGGTTCCAGTACTAACAAAGAATCCGGCAGGAATTCCGGCCAGCCTCTGATCCTCCCAAAGATCAATCG
TCGAATCAAAAAACGACTTCATCTGCGCCGCCATGGATCCATACCTCGTCGGAAATCCAAACAAGAATCCGTCCGCCTCCACCATCTCCTCCACGGAAATCACCGGCACG
CCGTCGTCCTTCGGCGGAACTCTCATCTGCTCCAGCGTCTCCAACGGCAGCGTCTCCGGCACCTTAAACAGAACACCTTCGACGCCGTCTACAGAATCGACTCCTTTCTT
CATCATCTTCGCCAAGAGATGGACGTGACCGTACATGGAGTAATAGACGATGAAGATCCTGAGATTTCCGGAGATTTCTCCGGCAGTGGATTTTGGTTGATCGGGAGTTG
GATGTGGATCGGAGACGGCTACGGATGCTCTGTTCTTGCTAGTGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAACAACTTACGCCGTCGTCTCTTGGCCGCCGCCTTGGGTTCCAGTACTAACAAAGAATCCGGCAGGAATTCCGGCCAGCCTCTGATCCTCCCAAAGATCAATCG
TCGAATCAAAAAACGACTTCATCTGCGCCGCCATGGATCCATACCTCGTCGGAAATCCAAACAAGAATCCGTCCGCCTCCACCATCTCCTCCACGGAAATCACCGGCACG
CCGTCGTCCTTCGGCGGAACTCTCATCTGCTCCAGCGTCTCCAACGGCAGCGTCTCCGGCACCTTAAACAGAACACCTTCGACGCCGTCTACAGAATCGACTCCTTTCTT
CATCATCTTCGCCAAGAGATGGACGTGACCGTACATGGAGTAATAGACGATGAAGATCCTGAGATTTCCGGAGATTTCTCCGGCAGTGGATTTTGGTTGATCGGGAGTTG
GATGTGGATCGGAGACGGCTACGGATGCTCTGTTCTTGCTAGTGAATAA
Protein sequenceShow/hide protein sequence
MGNNLRRRLLAAALGSSTNKESGRNSGQPLILPKINRRIKKRLHLRRHGSIPRRKSKQESVRLHHLLHGNHRHAVVLRRNSHLLQRLQRQRLRHLKQNTFDAVYRIDSFL
HHLRQEMDVTVHGVIDDEDPEISGDFSGSGFWLIGSWMWIGDGYGCSVLASE