; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG09G018330 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG09G018330
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTranscription factor protein
Genome locationCG_Chr09:35382002..35383534
RNA-Seq ExpressionClCG09G018330
SyntenyClCG09G018330
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151201.2 transcription factor PRE6 [Cucumis sativus]2.0e-3698.86Show/hide
Query:  RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

XP_022134204.1 transcription factor PRE6 [Momordica charantia]6.6e-3596.59Show/hide
Query:  RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        RRSRQS  SRISDDQIIELVSKLRQLVPEIRHRR DKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Subjt:  RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

XP_022939473.1 transcription factor PRE6-like [Cucurbita moschata]4.3e-3493.18Show/hide
Query:  RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        RRSR S ASRISDDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHREVDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

XP_023548992.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo]4.3e-3494.32Show/hide
Query:  RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        RRSRQ  ASRISDDQIIEL+SKLR LVPEIRHRR DKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Subjt:  RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

XP_038890645.1 LOW QUALITY PROTEIN: transcription factor PRE6 [Benincasa hispida]2.0e-3698.86Show/hide
Query:  RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        RRSRQSSASRI+DDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Subjt:  RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

TrEMBL top hitse value%identityAlignment
A0A0A0KXB9 Transcription regulator9.9e-3798.86Show/hide
Query:  RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

A0A1S3CB29 transcription factor PRE69.9e-3798.86Show/hide
Query:  RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

A0A5A7T970 Transcription factor PRE69.9e-3798.86Show/hide
Query:  RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

A0A6J1BY51 transcription factor PRE63.2e-3596.59Show/hide
Query:  RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        RRSRQS  SRISDDQIIELVSKLRQLVPEIRHRR DKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Subjt:  RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

A0A6J1GKQ6 transcription factor PRE6-like2.1e-3494.32Show/hide
Query:  RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        RRSRQ  ASRISDDQIIEL+SKLR LVPEIRHRR DKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Subjt:  RRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI68.4e-2569.77Show/hide
Query:  RSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM
        RSRQS +SRI+D+QI +LVSKL+ L+PE R R  D+V +S+VLQETCNYIR+LH+EVDDLSERLS+LL+T D  SA+AAIIRSL+M
Subjt:  RSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM

Q8GW32 Transcription factor PRE63.3e-2978.82Show/hide
Query:  RSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI
        RSRQS +SRISDDQI +LVSKL+ L+PE+R RR DKVSASKVLQETCNYIRNLHREVDDLS+RLS+LL++ D +SAEAAIIRSL+
Subjt:  RSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI

Q9FLE9 Transcription factor PRE15.3e-2776.4Show/hide
Query:  RRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM
        RRSRQ SSA RISD+Q+I+LVSKLRQ++PEI + RR DK SASKVLQETCNYIRNL+REVD+LSERLSQLL ++D DS EAA+IRSL+M
Subjt:  RRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM

Q9LJX1 Transcription factor PRE51.1e-2777.53Show/hide
Query:  RRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM
        RRSRQ S+ASRISDDQ+I+LVSKLRQ +PEI   RR DKVSASKVLQETCNYIR LHREVD+LS+RLSQLL ++D DS EAA+IRSL+M
Subjt:  RRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM

Q9LXG5 Transcription factor PRE24.9e-2572.73Show/hide
Query:  RRSRQ-SSASRISDDQIIELVSKLRQLVPEIR-HRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI
        RRSRQ SS+SRISDDQI +L+SKLRQ +PEIR +RR + VSASKVLQETCNYIRNL++E DDLS+RL+QLL +ID +S +AA+IRSLI
Subjt:  RRSRQ-SSASRISDDQIIELVSKLRQLVPEIR-HRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.3e-3078.82Show/hide
Query:  RSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI
        RSRQS +SRISDDQI +LVSKL+ L+PE+R RR DKVSASKVLQETCNYIRNLHREVDDLS+RLS+LL++ D +SAEAAIIRSL+
Subjt:  RSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 11.9e-2469.66Show/hide
Query:  RSRQSS-ASRISDDQIIELVSKLRQLVPEIR-HRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        RSRQSS  SRIS+DQI +L+ KL+QL+PE+R  RR DKVSA++VLQ+TCNYIRNLHREVDDLSERLS+LL+  ++D+A+AA+IRSL+ Q
Subjt:  RSRQSS-ASRISDDQIIELVSKLRQLVPEIR-HRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein7.5e-2977.53Show/hide
Query:  RRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM
        RRSRQ S+ASRISDDQ+I+LVSKLRQ +PEI   RR DKVSASKVLQETCNYIR LHREVD+LS+RLSQLL ++D DS EAA+IRSL+M
Subjt:  RRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM

AT5G15160.1 BANQUO 23.5e-2672.73Show/hide
Query:  RRSRQ-SSASRISDDQIIELVSKLRQLVPEIR-HRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI
        RRSRQ SS+SRISDDQI +L+SKLRQ +PEIR +RR + VSASKVLQETCNYIRNL++E DDLS+RL+QLL +ID +S +AA+IRSLI
Subjt:  RRSRQ-SSASRISDDQIIELVSKLRQLVPEIR-HRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein3.7e-2876.4Show/hide
Query:  RRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM
        RRSRQ SSA RISD+Q+I+LVSKLRQ++PEI + RR DK SASKVLQETCNYIRNL+REVD+LSERLSQLL ++D DS EAA+IRSL+M
Subjt:  RRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCAAATCATTGAACTCGTTTCCAAGCTTCGTCAACTCGTCCCCGAGATTCGCCATCGCCGCCCCGATAAGAAGATCAAGGCAGTCAAGCGCTTCTAGAATCAGTGA
TGACCAAATCATTGAACTCGTTTCCAAGCTTCGTCAACTCGTCCCCGAGATTCGCCATCGCCGCCCCGATAAGGTATCAGCTTCAAAAGTCCTCCAAGAGACCTGCAATT
ACATTAGAAATTTGCACAGGGAAGTTGATGATCTAAGTGAAAGACTCTCTCAACTCTTGTCTACTATAGATGCTGATAGTGCAGAGGCCGCCATAATTAGGAGCTTAATT
ATGCAATAG
mRNA sequenceShow/hide mRNA sequence
CTTTCCTTCTTCATCCTTCCAATTTTTGCTGCTTCAAAAACAAAAAAAAAAAAAAAAAAAAAATCTCTACATAAACCTATTAACACATCAATTAACAACATGTCTAGCAG
AAGATCAAGGCAGTCAAGCGCTTCTAGAATCAGTGATGACCAAATCATTGAACTCGTTTCCAAGCTTCGTCAACTCGTCCCCGAGATTCGCCATCGCCGCCCCGATAAGA
AGATCAAGGCAGTCAAGCGCTTCTAGAATCAGTGATGACCAAATCATTGAACTCGTTTCCAAGCTTCGTCAACTCGTCCCCGAGATTCGCCATCGCCGCCCCGATAAGGT
ATCAGCTTCAAAAGTCCTCCAAGAGACCTGCAATTACATTAGAAATTTGCACAGGGAAGTTGATGATCTAAGTGAAAGACTCTCTCAACTCTTGTCTACTATAGATGCTG
ATAGTGCAGAGGCCGCCATAATTAGGAGCTTAATTATGCAATAGGTTATGAACAACAAGAACAAGAACAAGGCTGTTGGGTTTGATAATCATATATATATTATATATATA
TTTTAATATGATATTTATATATAAGATATGATGTTACTATGTTATTTATATGGGTTTTTTTCTTCCTTTTTTTATATTTCCTTTTCTAGGTTTTTGGTCGCTT
Protein sequenceShow/hide protein sequence
MTKSLNSFPSFVNSSPRFAIAAPIRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI
MQ