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ClCG09G018710 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG09G018710
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRNA ligase/cyclic nucleotide phosphodiesterase
Genome locationCG_Chr09:35963985..35964536
RNA-Seq ExpressionClCG09G018710
SyntenyClCG09G018710
Gene Ontology termsNA
InterPro domainsIPR009097 - Cyclic phosphodiesterase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004142350.1 uncharacterized protein LOC101208638 [Cucumis sativus]7.1e-9598.36Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESIVKNFASKQEP+ LSLSSIGSLPSDNNILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
        FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA

XP_022939795.1 uncharacterized protein LOC111445566 [Cucurbita moschata]1.6e-9497.27Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEP+PLSLSSIGSLPSDNN+LFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
        FQSQLCEAMRKEGIEIGEEYR GSWIPHC+VAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA

XP_022964210.1 uncharacterized protein LOC111464296 [Cucurbita moschata]1.6e-9497.27Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEP+PLSL+SIGSLP+DNNILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
        FQSQLCEAMRKEGIE GEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT+EA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA

XP_022993671.1 uncharacterized protein LOC111489594 [Cucurbita maxima]7.1e-9597.81Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEP+PLSLSSIGSLPSDNN+LFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
        FQSQLCEAMRKEGIEIGEEYR GSWIPHCAVAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA

XP_038890563.1 uncharacterized protein LOC120080080 [Benincasa hispida]7.1e-9597.81Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESIVKNFASKQEP+PLSLSSIGSLPSD+NILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
        FQSQLC+AMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA

TrEMBL top hitse value%identityAlignment
A0A0A0KVB2 Uncharacterized protein3.4e-9598.36Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESIVKNFASKQEP+ LSLSSIGSLPSDNNILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
        FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA

A0A1S3C834 uncharacterized protein LOC1034980553.4e-9598.36Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESIVKNFASKQEP+ LSLSSIGSLPSDNNILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
        FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA

A0A5A7T7Y4 RNA ligase/cyclic nucleotide phosphodiesterase3.4e-9598.36Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESIVKNFASKQEP+ LSLSSIGSLPSDNNILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
        FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA

A0A6J1FNR7 uncharacterized protein LOC1114455667.6e-9597.27Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEP+PLSLSSIGSLPSDNN+LFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
        FQSQLCEAMRKEGIEIGEEYR GSWIPHC+VAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA

A0A6J1JWZ6 uncharacterized protein LOC1114895943.4e-9597.81Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEP+PLSLSSIGSLPSDNN+LFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
        FQSQLCEAMRKEGIEIGEEYR GSWIPHCAVAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G28140.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein3.8e-7070.65Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-SPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLL
        MSQG+AIELYFDPALENQVLKAWNV ARRQIST LI  ESRPHITLFS +  ++ TK+E I+K+F+SKQEP+ LS SSIGS  SD+N LFL P PS+SL+
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-SPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLL

Query:  QFQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
        Q Q QLCE ++KEG EIGEEYR+ SW+P C+VA +VPK+R++E F VLRDLKL V GYA+DIGLVEFSPVRE+FSF LGN +E+
Subjt:  QFQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA

AT3G28140.2 RNA ligase/cyclic nucleotide phosphodiesterase family protein1.4e-5366.67Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-SPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLL
        MSQG+AIELYFDPALENQVLKAWNV ARRQIST LI  ESRPHITLFS +  ++ TK+E I+K+F+SKQEP+ LS SSIGS  SD+N LFL P PS+SL+
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-SPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLL

Query:  QFQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKL
        Q Q QLCE ++KEG EIGEEYR+ SW+P C+VA +VPK+R++E F V     L
Subjt:  QFQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKL

AT5G40190.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein3.0e-7571.04Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQ
        MS+G+AIELYFDPALENQVLKAWNV ARRQIST+LI  ESRPHITLFS+ F + T++ES++KNF SKQEP+ +S S+IGS  SDNN+LFL P PS+SLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
         Q+QLC+ ++KE ++IGEEYR+ SW+P C VA +VPK+RMAEAF VLRDLKLPV+GY ++IGLVEFSPVRE+FSF LGNT+E+
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACAAGGGTTTGCGATCGAGCTCTATTTCGATCCGGCACTTGAAAATCAGGTTCTCAAGGCTTGGAATGTACTTGCTCGCCGTCAAATTAGTACCCAACTC
ATCGAAATTGAATCACGCCCTCACATTACCCTCTTCTCCAGCCCTTTTCTCGAACCCACAAAAGTTGAATCCATCGTTAAAAATTTCGCTTCTAAACAGGAACCC
ATGCCTTTGTCCTTATCGTCAATTGGCAGCCTTCCCAGTGACAACAACATTCTCTTTCTCGGTCCAGCGCCTTCAATTTCACTTCTCCAATTCCAGTCCCAATTG
TGCGAAGCAATGAGGAAAGAAGGAATTGAAATCGGTGAGGAATATCGCCTTGGTTCGTGGATTCCCCATTGCGCTGTTGCTCAGGAGGTGCCTAAGGCTCGAATG
GCTGAGGCATTTTGTGTTCTGAGGGATTTGAAGCTACCAGTTTCCGGGTATGCAATTGATATTGGGTTGGTGGAATTTTCCCCTGTTCGAGAGCTGTTCTCTTTT
GTTCTTGGTAACACTGTCGAAGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCACAAGGGTTTGCGATCGAGCTCTATTTCGATCCGGCACTTGAAAATCAGGTTCTCAAGGCTTGGAATGTACTTGCTCGCCGTCAAATTAGTACCCAACTC
ATCGAAATTGAATCACGCCCTCACATTACCCTCTTCTCCAGCCCTTTTCTCGAACCCACAAAAGTTGAATCCATCGTTAAAAATTTCGCTTCTAAACAGGAACCC
ATGCCTTTGTCCTTATCGTCAATTGGCAGCCTTCCCAGTGACAACAACATTCTCTTTCTCGGTCCAGCGCCTTCAATTTCACTTCTCCAATTCCAGTCCCAATTG
TGCGAAGCAATGAGGAAAGAAGGAATTGAAATCGGTGAGGAATATCGCCTTGGTTCGTGGATTCCCCATTGCGCTGTTGCTCAGGAGGTGCCTAAGGCTCGAATG
GCTGAGGCATTTTGTGTTCTGAGGGATTTGAAGCTACCAGTTTCCGGGTATGCAATTGATATTGGGTTGGTGGAATTTTCCCCTGTTCGAGAGCTGTTCTCTTTT
GTTCTTGGTAACACTGTCGAAGCTTGA
Protein sequenceShow/hide protein sequence
MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPMPLSLSSIGSLPSDNNILFLGPAPSISLLQFQSQL
CEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA