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ClCG09G021275 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG09G021275
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionmRNA decay activator protein ZFP36L2-like isoform X2
Genome locationCG_Chr09:38253395..38256678
RNA-Seq ExpressionClCG09G021275
SyntenyClCG09G021275
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK07952.1 tristetraprolin-like isoform X2 [Cucumis melo var. makuwa]1.1e-1573.02Show/hide
Query:  MEDRQGKRSSKTSIIKGLQL----INSQMDYHLVVGETRHYHQEINCKSPTIIDRYTIMNHYA
        MEDRQ KRSS+TSIIKGL      +N QMD HLV+G TRHYHQE NCKSPTI+D Y IMNHYA
Subjt:  MEDRQGKRSSKTSIIKGLQL----INSQMDYHLVVGETRHYHQEINCKSPTIIDRYTIMNHYA

XP_004148935.1 uncharacterized protein LOC101215865 [Cucumis sativus]9.7e-1776.19Show/hide
Query:  MEDRQGKRSSKTSIIKGLQL----INSQMDYHLVVGETRHYHQEINCKSPTIIDRYTIMNHYA
        MEDRQGKRSSKTSIIKGL      +N QMD HLV+G TRHYHQE NCKSPTI+D Y IMNHYA
Subjt:  MEDRQGKRSSKTSIIKGLQL----INSQMDYHLVVGETRHYHQEINCKSPTIIDRYTIMNHYA

XP_022154583.1 uncharacterized protein LOC111021811 [Momordica charantia]2.5e-1271.93Show/hide
Query:  MEDRQGKRSSKTSIIKGLQL----INSQMDYHLVVGETRHYHQEINCKSPTIIDRYT
        ME RQGKRSSKTSIIKGL +    IN QMD HLV+G T HYHQE NCKSPT++DRY+
Subjt:  MEDRQGKRSSKTSIIKGLQL----INSQMDYHLVVGETRHYHQEINCKSPTIIDRYT

XP_022974000.1 mRNA decay activator protein ZFP36L2-like isoform X2 [Cucurbita maxima]6.7e-1069.64Show/hide
Query:  MEDRQGKRSSKTSIIKGL----QLINSQMDYHLVVGETRHYHQEINCKSPTIIDRY
        MEDRQGKRSSK SIIKGL    + I  QMD HLV+G T HYHQE N K PTI+DRY
Subjt:  MEDRQGKRSSKTSIIKGL----QLINSQMDYHLVVGETRHYHQEINCKSPTIIDRY

XP_038897010.1 uncharacterized protein LOC120085195 [Benincasa hispida]6.7e-1877.78Show/hide
Query:  MEDRQGKRSSKTSIIKGLQL----INSQMDYHLVVGETRHYHQEINCKSPTIIDRYTIMNHYA
        MEDRQGKRS+KTSIIKGL      IN QMD HLV+G TRHYHQE NC+SPTI+DRYTIMNHYA
Subjt:  MEDRQGKRSSKTSIIKGLQL----INSQMDYHLVVGETRHYHQEINCKSPTIIDRYTIMNHYA

TrEMBL top hitse value%identityAlignment
A0A5D3C9H3 Tristetraprolin-like isoform X25.2e-1673.02Show/hide
Query:  MEDRQGKRSSKTSIIKGLQL----INSQMDYHLVVGETRHYHQEINCKSPTIIDRYTIMNHYA
        MEDRQ KRSS+TSIIKGL      +N QMD HLV+G TRHYHQE NCKSPTI+D Y IMNHYA
Subjt:  MEDRQGKRSSKTSIIKGLQL----INSQMDYHLVVGETRHYHQEINCKSPTIIDRYTIMNHYA

A0A6J1DKP7 uncharacterized protein LOC1110218111.2e-1271.93Show/hide
Query:  MEDRQGKRSSKTSIIKGLQL----INSQMDYHLVVGETRHYHQEINCKSPTIIDRYT
        ME RQGKRSSKTSIIKGL +    IN QMD HLV+G T HYHQE NCKSPT++DRY+
Subjt:  MEDRQGKRSSKTSIIKGLQL----INSQMDYHLVVGETRHYHQEINCKSPTIIDRYT

A0A6J1ICT5 mRNA decay activator protein ZFP36L2-like isoform X23.2e-1069.64Show/hide
Query:  MEDRQGKRSSKTSIIKGL----QLINSQMDYHLVVGETRHYHQEINCKSPTIIDRY
        MEDRQGKRSSK SIIKGL    + I  QMD HLV+G T HYHQE N K PTI+DRY
Subjt:  MEDRQGKRSSKTSIIKGL----QLINSQMDYHLVVGETRHYHQEINCKSPTIIDRY

A0A6J1ICU5 uncharacterized protein LOC111472626 isoform X14.2e-1069.64Show/hide
Query:  MEDRQGKRSSKTSIIKGL----QLINSQMDYHLVVGETRHYHQEINCKSPTIIDRY
        MEDRQGKRSSK SIIKGL    + I  QMD HLV+G T HYHQE N K PTI+DRY
Subjt:  MEDRQGKRSSKTSIIKGL----QLINSQMDYHLVVGETRHYHQEINCKSPTIIDRY

A0A6J1IEX1 uncharacterized protein LOC111472616 isoform X13.2e-1069.64Show/hide
Query:  MEDRQGKRSSKTSIIKGL----QLINSQMDYHLVVGETRHYHQEINCKSPTIIDRY
        MEDRQGKRSSK SIIKGL    + I  QMD HLV+G T HYHQE N K PTI+DRY
Subjt:  MEDRQGKRSSKTSIIKGL----QLINSQMDYHLVVGETRHYHQEINCKSPTIIDRY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAATGTCGTTCCTACTCCACTTCCAAACTTCGAATTCAAGAATTCATGCTCATTTTCCTTCCAAAGAAGAAATATGACTCTTAATCTCTCTCTCTCAAATCGGAG
TCTCTCAACGGCGGATTCAATCGTAGGCTCCATACAATCTGTCGGTTCCAAAACGGGTTGTCGACGTCGTTACCGCCATGATCAACAATCAGTGTTGCAATTAAGAGAAA
GCTTGTTGCTTGTATCTCTATCAGCTTTCCGTCCGTCTTTCTTAGACTATTGCATCAGGCCTTCTCTTACGACTCTGTCTCAGTCCAGGCTTTATCAAAACAAAATGTCG
TTCCGTATCGGTAAAGGAGCTGAAAGACTAGGAAAGGACAAAGCATTTGCATTCAACATTGAAACAAAAGTTTCATCTCTCTTCTCCACTTTAGCATCTCAATCTTTTGT
TCATATTCATCTTTTGTTATCTCTGTTCATGGAAGATCGACAAGGCAAAAGGAGCTCTAAAACATCCATTATCAAAGGCCTTCAGCTGATAAACAGTCAGATGGACTATC
ACTTAGTAGTCGGGGAAACCAGACACTATCACCAGGAAATAAACTGTAAAAGCCCAACAATCATCGATCGTTACACTATTATGAATCACTATGCTAGAGCATTTCTGGAA
GCAATAGCTTCAATTCTCGGGGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTAATGTCGTTCCTACTCCACTTCCAAACTTCGAATTCAAGAATTCATGCTCATTTTCCTTCCAAAGAAGAAATATGACTCTTAATCTCTCTCTCTCAAATCGGAG
TCTCTCAACGGCGGATTCAATCGTAGGCTCCATACAATCTGTCGGTTCCAAAACGGGTTGTCGACGTCGTTACCGCCATGATCAACAATCAGTGTTGCAATTAAGAGAAA
GCTTGTTGCTTGTATCTCTATCAGCTTTCCGTCCGTCTTTCTTAGACTATTGCATCAGGCCTTCTCTTACGACTCTGTCTCAGTCCAGGCTTTATCAAAACAAAATGTCG
TTCCGTATCGGTAAAGGAGCTGAAAGACTAGGAAAGGACAAAGCATTTGCATTCAACATTGAAACAAAAGTTTCATCTCTCTTCTCCACTTTAGCATCTCAATCTTTTGT
TCATATTCATCTTTTGTTATCTCTGTTCATGGAAGATCGACAAGGCAAAAGGAGCTCTAAAACATCCATTATCAAAGGCCTTCAGCTGATAAACAGTCAGATGGACTATC
ACTTAGTAGTCGGGGAAACCAGACACTATCACCAGGAAATAAACTGTAAAAGCCCAACAATCATCGATCGTTACACTATTATGAATCACTATGCTAGAGCATTTCTGGAA
GCAATAGCTTCAATTCTCGGGGAATAG
Protein sequenceShow/hide protein sequence
MSNVVPTPLPNFEFKNSCSFSFQRRNMTLNLSLSNRSLSTADSIVGSIQSVGSKTGCRRRYRHDQQSVLQLRESLLLVSLSAFRPSFLDYCIRPSLTTLSQSRLYQNKMS
FRIGKGAERLGKDKAFAFNIETKVSSLFSTLASQSFVHIHLLLSLFMEDRQGKRSSKTSIIKGLQLINSQMDYHLVVGETRHYHQEINCKSPTIIDRYTIMNHYARAFLE
AIASILGE