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ClCG09G022880 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG09G022880
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionnifU-like protein 3, chloroplastic
Genome locationCG_Chr09:39871598..39871861
RNA-Seq ExpressionClCG09G022880
SyntenyClCG09G022880
Gene Ontology termsGO:0016226 - iron-sulfur cluster assembly (biological process)
GO:0048564 - photosystem I assembly (biological process)
GO:0097428 - protein maturation by iron-sulfur cluster transfer (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0005506 - iron ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
GO:0060090 - molecular adaptor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK01397.1 nifU-like protein 3 [Cucumis melo var. makuwa]3.4e-3194.87Show/hide
Query:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ
        MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKV   I+
Subjt:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ

XP_004148324.1 nifU-like protein 3, chloroplastic isoform X2 [Cucumis sativus]3.4e-3194.87Show/hide
Query:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ
        MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKV   I+
Subjt:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ

XP_022153284.1 nifU-like protein 3, chloroplastic isoform X1 [Momordica charantia]3.4e-3194.87Show/hide
Query:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ
        MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKV   I+
Subjt:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ

XP_022153286.1 nifU-like protein 3, chloroplastic isoform X2 [Momordica charantia]3.4e-3194.87Show/hide
Query:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ
        MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKV   I+
Subjt:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ

XP_038889481.1 nifU-like protein 3, chloroplastic [Benincasa hispida]3.4e-3194.87Show/hide
Query:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ
        MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKV   I+
Subjt:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ

TrEMBL top hitse value%identityAlignment
A0A0A0LMF5 Uncharacterized protein1.7e-3194.87Show/hide
Query:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ
        MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKV   I+
Subjt:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ

A0A5A7U598 NifU-like protein 31.7e-3194.87Show/hide
Query:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ
        MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKV   I+
Subjt:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ

A0A5D3BPX3 NifU-like protein 31.7e-3194.87Show/hide
Query:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ
        MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKV   I+
Subjt:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ

A0A6J1DIL8 nifU-like protein 3, chloroplastic isoform X11.7e-3194.87Show/hide
Query:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ
        MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKV   I+
Subjt:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ

A0A6J1DK68 nifU-like protein 3, chloroplastic isoform X21.7e-3194.87Show/hide
Query:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ
        MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKV   I+
Subjt:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ

SwissProt top hitse value%identityAlignment
P20628 Nitrogen fixation protein NifU5.4e-1158.93Show/hide
Query:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQI
        +ADGG+V L+++DG +V + LQGACGSC SST TLK+ IE+RLRD+I   L VE +
Subjt:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQI

P33179 Nitrogen fixation protein NifU (Fragment)6.3e-1260.71Show/hide
Query:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQI
        +ADGG+V L+++DG +V + LQGACGSCPSST TLK+ IE+RLRD+I   L VE +
Subjt:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQI

Q84LK7 NifU-like protein 1, chloroplastic2.3e-2273.61Show/hide
Query:  ADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKV
        ADGG+VALHEI G VV LKLQGACGSCPSS +T+K GIE RL +KIP++  VE + D ETGLELNEENVEKV
Subjt:  ADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKV

Q84RQ7 NifU-like protein 3, chloroplastic1.7e-2883.78Show/hide
Query:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTET-GLELNEENVEKV
        MADGGNVALHEIDGLVV+LKLQGACGSCPSS+MTLKMGIE+RLRDKIPEI+ VEQ +++ET GLELN+EN+EKV
Subjt:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTET-GLELNEENVEKV

Q93W20 NifU-like protein 2, chloroplastic4.5e-2671.95Show/hide
Query:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQVSLL
        M+DGGNVALHEIDG +V +KLQGACGSCPSSTMT+KMGIE RL +KIPEI+ VE + D ETGLELNEEN+EKV   I+  L+
Subjt:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQVSLL

Arabidopsis top hitse value%identityAlignment
AT3G20970.1 NFU domain protein 41.4e-0645Show/hide
Query:  DGGNVALHEID--GLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTE
        DGG++     D    +V L++QGAC  CPSS++TLK GIE  L   + E+  VEQ  D E
Subjt:  DGGNVALHEID--GLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTE

AT4G01940.1 NFU domain protein 11.8e-0949.18Show/hide
Query:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEIL-EVEQIMDTE
        ++DGGNV +  ++  VV LKLQGAC SCPSS+ T+ MGIE  L++K  + L ++ Q+ D E
Subjt:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEIL-EVEQIMDTE

AT4G25910.1 NFU domain protein 31.2e-2983.78Show/hide
Query:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTET-GLELNEENVEKV
        MADGGNVALHEIDGLVV+LKLQGACGSCPSS+MTLKMGIE+RLRDKIPEI+ VEQ +++ET GLELN+EN+EKV
Subjt:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTET-GLELNEENVEKV

AT5G49940.1 NIFU-like protein 23.2e-2771.95Show/hide
Query:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQVSLL
        M+DGGNVALHEIDG +V +KLQGACGSCPSSTMT+KMGIE RL +KIPEI+ VE + D ETGLELNEEN+EKV   I+  L+
Subjt:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQVSLL

AT5G49940.2 NIFU-like protein 21.1e-2777.33Show/hide
Query:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSF
        M+DGGNVALHEIDG +V +KLQGACGSCPSSTMT+KMGIE RL +KIPEI+ VE + D ETGLELNEEN+EKV F
Subjt:  MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATGGAGGGAATGTTGCTTTGCATGAGATAGATGGGCTTGTTGTGATATTGAAACTTCAAGGAGCATGTGGTTCTTGCCCAAGCTCAACAATGACACTGAAAAT
GGGAATTGAGACCCGACTCAGAGACAAAATTCCTGAAATTTTGGAAGTTGAGCAGATTATGGACACTGAAACAGGACTTGAACTCAATGAGGAAAATGTTGAAAAGGTGA
GTTTCTCAATTCAAGTTTCTCTGCTATGCAGAAAGGAATTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGATGGAGGGAATGTTGCTTTGCATGAGATAGATGGGCTTGTTGTGATATTGAAACTTCAAGGAGCATGTGGTTCTTGCCCAAGCTCAACAATGACACTGAAAAT
GGGAATTGAGACCCGACTCAGAGACAAAATTCCTGAAATTTTGGAAGTTGAGCAGATTATGGACACTGAAACAGGACTTGAACTCAATGAGGAAAATGTTGAAAAGGTGA
GTTTCTCAATTCAAGTTTCTCTGCTATGCAGAAAGGAATTTTAA
Protein sequenceShow/hide protein sequence
MADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQVSLLCRKEF