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ClCG10G003260 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG10G003260
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionacidic leucine-rich nuclear phosphoprotein 32 family member B-like
Genome locationCG_Chr10:4025562..4026319
RNA-Seq ExpressionClCG10G003260
SyntenyClCG10G003260
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650077.1 hypothetical protein Csa_010314 [Cucumis sativus]1.1e-4868.34Show/hide
Query:  MGMRIMVGLAPILVVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQPHEQFEIMELILQLSPYH-KP-HQDIEF-SAREDTR--ED
        MGMRIM+GL PILVV++L VTSKSSQFF    LFGSPHFIFSIFNSIILLIT+RNH+EPQPHEQF+IMELILQLSPYH KP HQD EF    +D R  +D
Subjt:  MGMRIMVGLAPILVVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQPHEQFEIMELILQLSPYH-KP-HQDIEF-SAREDTR--ED

Query:  DGE---NAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKLRDHFLIQICSSNYVSS
        DG+   + +Y N+N+++D+  SDEDE+++W+EKE E       DD+ DE E WDE EEE+EELE RIEEFIAKVNKRWREEKLRDH LIQICS+N V++
Subjt:  DGE---NAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKLRDHFLIQICSSNYVSS

KAG7028360.1 RNA polymerase II transcription factor B subunit 5, partial [Cucurbita argyrosperma subsp. argyrosperma]7.4e-2148.26Show/hide
Query:  MGMRIMVGLAPIL----------VVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQPHEQFEIMELILQLSPYHKPH---QDIEFS
        MGMRIMVGL  ++           VV+L VTSKSSQFF S+ L GSPHF+FSIFNSIILLI V  H  P     + I +    +  YH+ +   Q IEF 
Subjt:  MGMRIMVGLAPIL----------VVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQPHEQFEIMELILQLSPYHKPH---QDIEFS

Query:  AREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKLRDHFLIQICSSN
            T   D E  +    N+Q ++DD D DE EQ +E EDED       DD++E    DE E+ ++ELEKRIEEFIAKVNKRWREEKL+D+ L Q  + +
Subjt:  AREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKLRDHFLIQICSSN

Query:  Y
        +
Subjt:  Y

TYK19467.1 hypothetical protein E5676_scaffold443G001210 [Cucumis melo var. makuwa]9.3e-2459.87Show/hide
Query:  VRNHDEPQ-PHEQFEIM--ELILQLSPYH-KPHQDIEFSAREDTRE---DDGENA----EYGNQNDQKDQDDSD-EDEIEQWNEKEDEDHEDNERDDDQD
        +RNH+EPQ PHEQFEIM  +LIL+LSPYH KPH        +DTRE   DDG+N     +Y N+N+++D+  SD EDE+++W+EKE E        +D+ 
Subjt:  VRNHDEPQ-PHEQFEIM--ELILQLSPYH-KPHQDIEFSAREDTRE---DDGENA----EYGNQNDQKDQDDSD-EDEIEQWNEKEDEDHEDNERDDDQD

Query:  EVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKLRDHFLIQICSSNYVSST
        E E WDE EEE+EELEKRIEEFIAKVNKRWREEKLRDH LIQICS+N +S+T
Subjt:  EVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKLRDHFLIQICSSNYVSST

XP_023005569.1 acidic leucine-rich nuclear phosphoprotein 32 family member B-like [Cucurbita maxima]6.5e-2550Show/hide
Query:  MGMRIMVGLAPIL-----VVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQPHEQFEIME---LILQLSPYHKPHQDIEFSAREDT
        MGMRIMVGL  ++       V+L  TSKSSQ F SS L GSPHF+FSIFNSIILLI V  H  P     + I +    +     Y+ P Q+IEF A +D 
Subjt:  MGMRIMVGLAPIL-----VVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQPHEQFEIME---LILQLSPYHKPHQDIEFSAREDT

Query:  REDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERD-DDQDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKLRDHFLIQICSSN
         + D E          +D   +++DEIEQ NE E E  ++ + D DD+D+ E  DEK + ++ELEKRIEEFIAKVNKRWREEKLRD+   Q CSSN
Subjt:  REDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERD-DDQDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKLRDHFLIQICSSN

XP_038876855.1 glutamic acid-rich protein-like [Benincasa hispida]1.2e-5875.49Show/hide
Query:  EKVNGKMGMRIMVGLAPILVVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQPHEQFEIMELILQLSPYHKPHQDIEFSA---RED
        EKVNGKMGMRIMVGL PILVV+ILWVTSKSSQ F SS+LF SPH IFSIFNSIILLIT+RNH EP P EQFEIMEL LQLSPYHKPHQDIEFSA   RED
Subjt:  EKVNGKMGMRIMVGLAPILVVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQPHEQFEIMELILQLSPYHKPHQDIEFSA---RED

Query:  TR---EDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKLRDHFLIQICSSNY
        TR   ED+ +N EYGN+N+++D + +DEDEI+Q NEKE ED EDN+RD+  D        EEE+EELEKRIEEFIAKVNKRWREEKLRDH LIQICS+N 
Subjt:  TR---EDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKLRDHFLIQICSSNY

Query:  VSST
        VSST
Subjt:  VSST

TrEMBL top hitse value%identityAlignment
A0A0A0L728 Uncharacterized protein2.6e-2763.27Show/hide
Query:  VRNHDEPQPHEQFEIMELILQLSPYH-KP-HQDIEF-SAREDTR--EDDGE---NAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEE
        +RNH+EPQPHEQF+IMELILQLSPYH KP HQD EF    +D R  +DDG+   + +Y N+N+++D+  SDEDE+++W+EKE E       DD+ DE E 
Subjt:  VRNHDEPQPHEQFEIMELILQLSPYH-KP-HQDIEF-SAREDTR--EDDGE---NAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEE

Query:  WDEKEEEEEELEKRIEEFIAKVNKRWREEKLRDHFLIQICSSNYVSS
        WDE EEE+EELE RIEEFIAKVNKRWREEKLRDH LIQICS+N V++
Subjt:  WDEKEEEEEELEKRIEEFIAKVNKRWREEKLRDHFLIQICSSNYVSS

A0A5D3D7D0 Uncharacterized protein4.5e-2459.87Show/hide
Query:  VRNHDEPQ-PHEQFEIM--ELILQLSPYH-KPHQDIEFSAREDTRE---DDGENA----EYGNQNDQKDQDDSD-EDEIEQWNEKEDEDHEDNERDDDQD
        +RNH+EPQ PHEQFEIM  +LIL+LSPYH KPH        +DTRE   DDG+N     +Y N+N+++D+  SD EDE+++W+EKE E        +D+ 
Subjt:  VRNHDEPQ-PHEQFEIM--ELILQLSPYH-KPHQDIEFSAREDTRE---DDGENA----EYGNQNDQKDQDDSD-EDEIEQWNEKEDEDHEDNERDDDQD

Query:  EVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKLRDHFLIQICSSNYVSST
        E E WDE EEE+EELEKRIEEFIAKVNKRWREEKLRDH LIQICS+N +S+T
Subjt:  EVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKLRDHFLIQICSSNYVSST

A0A6J1E6C0 nucleolin-like4.4e-1148.3Show/hide
Query:  MVGLAPILVVVI-LWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQPHEQFEIMELILQLSPYHKPHQDIEFSAR---EDTREDD-GENA
        MVGL PILVVV+ LWV+S        S+LFGSP+ IFSIFN +ILL+TVRNH EP+          +LQ S YHK  QD EFSAR   ED REDD  ENA
Subjt:  MVGLAPILVVVI-LWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQPHEQFEIMELILQLSPYHKPHQDIEFSAR---EDTREDD-GENA

Query:  EYGNQNDQKDQDDSDEDEIEQWNEKEDED------HEDNERDDDQ----------------DEVEEWDEKEEEEEE
        +    + + ++ D D DEIEQ NE+++ED       ED +RD D+                DE E WD++EEEEEE
Subjt:  EYGNQNDQKDQDDSDEDEIEQWNEKEDED------HEDNERDDDQ----------------DEVEEWDEKEEEEEE

A0A6J1KZL9 acidic leucine-rich nuclear phosphoprotein 32 family member B-like3.1e-2550Show/hide
Query:  MGMRIMVGLAPIL-----VVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQPHEQFEIME---LILQLSPYHKPHQDIEFSAREDT
        MGMRIMVGL  ++       V+L  TSKSSQ F SS L GSPHF+FSIFNSIILLI V  H  P     + I +    +     Y+ P Q+IEF A +D 
Subjt:  MGMRIMVGLAPIL-----VVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQPHEQFEIME---LILQLSPYHKPHQDIEFSAREDT

Query:  REDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERD-DDQDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKLRDHFLIQICSSN
         + D E          +D   +++DEIEQ NE E E  ++ + D DD+D+ E  DEK + ++ELEKRIEEFIAKVNKRWREEKLRD+   Q CSSN
Subjt:  REDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERD-DDQDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKLRDHFLIQICSSN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACGAGAAAGTGAATGGAAAAATGGGGATGAGAATTATGGTGGGATTGGCACCAATTTTGGTGGTGGTGATTTTGTGGGTAACATCAAAATCATCTCAATTTTTTCA
AAGTAGTAATCTTTTTGGAAGTCCTCATTTCATATTCTCAATCTTCAACTCCATAATTCTTCTCATAACTGTGAGAAACCATGATGAGCCACAACCTCATGAACAATTTG
AGATAATGGAACTTATTCTTCAATTATCTCCCTATCATAAGCCTCATCAAGACATTGAATTTAGTGCTCGTGAAGATACAAGAGAAGATGACGGTGAAAATGCCGAATAT
GGAAACCAAAATGATCAGAAAGATCAAGACGATAGTGATGAAGATGAAATCGAGCAATGGAATGAGAAAGAAGATGAAGATCATGAAGATAACGAGCGTGACGACGATCA
AGATGAGGTCGAGGAGTGGGACGAGAAAGAGGAGGAAGAAGAAGAATTGGAGAAGAGGATTGAAGAATTCATAGCAAAGGTGAACAAGAGATGGAGAGAAGAGAAGTTGA
GAGATCATTTTCTTATTCAAATTTGTTCTAGTAACTATGTTAGTAGTACCTGA
mRNA sequenceShow/hide mRNA sequence
TGATGAACGAGAAAGTGAATGGAAAAATGGGGATGAGAATTATGGTGGGATTGGCACCAATTTTGGTGGTGGTGATTTTGTGGGTAACATCAAAATCATCTCAATTTTTT
CAAAGTAGTAATCTTTTTGGAAGTCCTCATTTCATATTCTCAATCTTCAACTCCATAATTCTTCTCATAACTGTGAGAAACCATGATGAGCCACAACCTCATGAACAATT
TGAGATAATGGAACTTATTCTTCAATTATCTCCCTATCATAAGCCTCATCAAGACATTGAATTTAGTGCTCGTGAAGATACAAGAGAAGATGACGGTGAAAATGCCGAAT
ATGGAAACCAAAATGATCAGAAAGATCAAGACGATAGTGATGAAGATGAAATCGAGCAATGGAATGAGAAAGAAGATGAAGATCATGAAGATAACGAGCGTGACGACGAT
CAAGATGAGGTCGAGGAGTGGGACGAGAAAGAGGAGGAAGAAGAAGAATTGGAGAAGAGGATTGAAGAATTCATAGCAAAGGTGAACAAGAGATGGAGAGAAGAGAAGTT
GAGAGATCATTTTCTTATTCAAATTTGTTCTAGTAACTATGTTAGTAGTACCTGAAATTAAATTATTAATTTCTTTTTCCATTCATAATTTTGTTACTCATTTATATTAT
ATGATCAAGCTTTTTTTTTGGTACTAATATTATATGATGAAGCTCTATTTTGCATGATGCCAAAAGAATATATATACATATAAAGATTTCTATTCCTT
Protein sequenceShow/hide protein sequence
MNEKVNGKMGMRIMVGLAPILVVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQPHEQFEIMELILQLSPYHKPHQDIEFSAREDTREDDGENAEY
GNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKLRDHFLIQICSSNYVSST