CuGenDBv2

Gene ID	ClCG10G005100
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Translation elongation factor EF1B/ribosomal protein S6 family protein
Genome location	CG_Chr10:6277596..6282452
RNA-Seq Expression	ClCG10G005100
Synteny	ClCG10G005100
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR000529 - Ribosomal protein S6 IPR014717 - Translation elongation factor EF1B/ribosomal protein S6 IPR035980 - Ribosomal protein S6 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022936695.1 uncharacterized protein LOC111443208 [Cucurbita moschata]

3.7e-57

67.17

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFR+NGVV DIKSFGVVQLGYGIKKLDGRY+Q                                       
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC

Query:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDE--DDDDDDDEEYNVEQEEK
                 GQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGK+EL+KFP   M  +DD DE  DDDDDDDEEY+VEQEE+
Subjt:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDE--DDDDDDDEEYNVEQEEK

XP_023539684.1 uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo]

1.1e-56

66.67

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFR+NGVV DIKSFGVVQLGYGIKKLDGRY+Q                                       
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC

Query:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDE--DDDDDDDEEYNVEQEEK
                 GQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD KYGLEFLSEDDGK+EL+KFP  +M  +DD DE  DDDDDDDEEY+VEQEE+
Subjt:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDE--DDDDDDDEEYNVEQEEK

XP_030954732.1 uncharacterized protein LOC115977176 [Quercus lobata]

1.1e-56

64.47

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC
        MPLYDCMLL+KPHVKKEAL++LVAR+GKHV+R+NGV+ D+KSFG+VQLGYGIKKLDGRYYQ                                       
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC

Query:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK
                 GQLMQMTMMATPN+NKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGK ELSKF   S+ D+DD DEDDDDDDD+EY+V+QEEKK
Subjt:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK

XP_038903157.1 uncharacterized protein LOC120089825 [Benincasa hispida]

2.0e-58

66.67

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC
        MPLY+CM+LMKPHVKKEALLDLVARVGKHVFR+NGVVCDI+SFGVVQLGYGIKKLDGRYYQ                                       
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC

Query:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDEDDDDDDDEEYNVEQEEKKA
                 GQLMQMTMMATP+ NKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSEL +FP  SM D+ D DEDD+DDDDEEYNVEQE+++A
Subjt:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDEDDDDDDDEEYNVEQEEKKA

XP_038905169.1 uncharacterized protein LOC120091279 [Benincasa hispida]

8.9e-59

67.16

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC
        MPLYDCMLLMKPHVKKEALLDLVARVGKHVFR+NGVVCDIKSFGVVQLGYGIKKL+GRYYQ                                       
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC

Query:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDE---DDDDDDDEEYNVEQEEKK
                 GQLMQMTMMATPN+NKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSE+DGKSEL KFP   M D+ DEDE   DDDD+DDEEYNVEQE+++
Subjt:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDE---DDDDDDDEEYNVEQEEKK

Query:  A
        A
Subjt:  A

TrEMBL top hits

e value

%identity

Alignment

A0A6A1UIP2 Uncharacterized protein

1.5e-56

64.65

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC
        MPLYDCMLL+KPHV KEAL+DLVAR+GKHV+R+NGV+ D+K FG VQLGYGIKKLDGRYYQ F     G + S      +A  S+     +   +  ++ 
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC

Query:  IVKF-PDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK
          K+   F +GQLMQMTMMATPNMN ELHYLNKEDRLLRWLL+KHRDTKYGLEFL+EDDGK ELSKF   S+ DED    +DDDDDDEEY V+QE KK
Subjt:  IVKF-PDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK

A0A6J1CN79 uncharacterized protein LOC111013137

1.2e-56

66.67

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC
        MPLYDCMLLMKPHVKKEALLDLVARVGKHVFR+NGVV DIKSFGVVQLGYGIKKLDGR+YQ                                       
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC

Query:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFP-LRSMTDEDDEDEDDDDDDDEEYNVEQEEKK
                 GQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRDTKYGLEFLSEDD K ELSKFP +  M D+D ++EDDDDD+DEEY+VEQEE K
Subjt:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFP-LRSMTDEDDEDEDDDDDDDEEYNVEQEEKK

A0A6J1FEF6 uncharacterized protein LOC111443208

1.8e-57

67.17

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFR+NGVV DIKSFGVVQLGYGIKKLDGRY+Q                                       
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC

Query:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDE--DDDDDDDEEYNVEQEEK
                 GQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGK+EL+KFP   M  +DD DE  DDDDDDDEEY+VEQEE+
Subjt:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDE--DDDDDDDEEYNVEQEEK

A0A6J1KXT7 uncharacterized protein LOC111498530

4.9e-55

63.96

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFR+NGVV D+KSFGVVQLGYGIKKLDGRY+Q                                       
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC

Query:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK
                 GQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGK+EL+KFP  SM  +DD DE+DDDDDD++   E E ++
Subjt:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK

A0A7N2L1D1 Uncharacterized protein

5.2e-57

64.47

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC
        MPLYDCMLL+KPHVKKEAL++LVAR+GKHV+R+NGV+ D+KSFG+VQLGYGIKKLDGRYYQ                                       
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC

Query:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK
                 GQLMQMTMMATPN+NKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGK ELSKF   S+ D+DD DEDDDDDDD+EY+V+QEEKK
Subjt:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein

1.3e-36

47.54

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC
        MPLYDCMLL KP ++KE L+DLVAR+GKHV+ +NGV+ +IKSFG V+LGYGI+KLDGR+YQ                                       
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC

Query:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDEDDDD
                 GQLMQ+TMM TPNMNKELHYLNKED+LLRWLLVKHRD K G     ++D  +  ++    S+ D    DEDD++
Subjt:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDEDDDD

AT3G18760.2 Translation elongation factor EF1B/ribosomal protein S6 family protein

4.0e-33

44.81

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC
        MPLYDCMLL KP ++KE L+DLVAR+GKHV+ +NGV+ +IKSFG V+LGYGI+KLDGR+Y                                        
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNC

Query:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDEDDDD
                     Q+TMM TPNMNKELHYLNKED+LLRWLLVKHRD K G     ++D  +  ++    S+ D    DEDD++
Subjt:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDEDDDD

Sequences

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CDS sequence

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ATGCCTCTTTACGATTGCATGCTTTTGATGAAACCCCATGTGAAGAAGGAGGCCTTGTTGGATTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGAAAAAATGGGGTTGT
CTGTGACATTAAGTCATTTGGTGTTGTCCAACTGGGTTATGGTATTAAGAAGCTTGATGGAAGATATTATCAGACCTTTCGTTTATACACAGTTGGAACTATTAGAAGTC
GAAGTCCCTACCCAAACTCTGCCGTGCATAGTGTACACAATATCTTAGGAGTTCTTAATTACAAGTTGTTCCTCAACTGTATTGTGAAGTTTCCCGACTTTGTTCTGGGC
CAACTTATGCAGATGACGATGATGGCTACTCCCAACATGAACAAGGAGTTGCATTACTTGAACAAGGAAGATCGATTGTTGCGTTGGCTTTTAGTGAAGCATCGCGACAC
AAAATATGGCCTGGAATTCCTTAGCGAAGATGATGGAAAGAGTGAACTCAGCAAATTTCCTTTACGAAGCATGACGGATGAAGATGACGAAGATGAAGACGACGATGACG
ATGACGATGAAGAATACAACGTGGAACAAGAAGAGAAGAAAGCATAG

mRNA sequence

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AAAACATTCAGCTAAATAAAGAAAAAAAATAAAAGAGAGAAAGAAATAAAATTTTATTAAGCTAAAGGAGAAAACCGGCGGAAGGAGAACAACGCTAAACAGACCATTTT
TTCTTAAACCCTATTTCACGTTCAGCCACACCCCCTCCCCGCCGCCGTACGCTGCACTCTAATCTGCCGCATTCTCACCCTTCCAACGAACTCGCCGCCTCTCCCTCCCT
CTCACACTCTCTCGCCCCTCCGAGCAATCAGAGTTACTTATCTCTGTTGTTTTTTTTTCCTTCAGAAATAGAAACAGTGGTTCAACCCCCGCCGTTGGTGAGATCGCACC
GCCCCTCACGCGTACTTCCGCTTATTTTTCAGCTCCCGAGGAGTTCCAAACAAAGGCAAGTAAAGGAAACGGCAGGCTGCCATTTCTCTCAGCAGTTTGAAGTAGGAATT
TTAGTGCTAAAGAACAGAAGATTAAGATGCCTCTTTACGATTGCATGCTTTTGATGAAACCCCATGTGAAGAAGGAGGCCTTGTTGGATTTGGTTGCTAGAGTGGGCAAG
CATGTGTTCAGAAAAAATGGGGTTGTCTGTGACATTAAGTCATTTGGTGTTGTCCAACTGGGTTATGGTATTAAGAAGCTTGATGGAAGATATTATCAGACCTTTCGTTT
ATACACAGTTGGAACTATTAGAAGTCGAAGTCCCTACCCAAACTCTGCCGTGCATAGTGTACACAATATCTTAGGAGTTCTTAATTACAAGTTGTTCCTCAACTGTATTG
TGAAGTTTCCCGACTTTGTTCTGGGCCAACTTATGCAGATGACGATGATGGCTACTCCCAACATGAACAAGGAGTTGCATTACTTGAACAAGGAAGATCGATTGTTGCGT
TGGCTTTTAGTGAAGCATCGCGACACAAAATATGGCCTGGAATTCCTTAGCGAAGATGATGGAAAGAGTGAACTCAGCAAATTTCCTTTACGAAGCATGACGGATGAAGA
TGACGAAGATGAAGACGACGATGACGATGACGATGAAGAATACAACGTGGAACAAGAAGAGAAGAAAGCATAGTGAACTTCGCTCGTCTCTATTATCATGGCCCAACTTT
GAACTTGTTGAACCATTTTTGGATTCTAGATAGACAAATAAAGAGGTCCATTGTTTCTTTAGTTGTCCATATCATCTGTTTCTGAGAAACAAAGATCCATAAATGTCTTT
TTCTCAAACTTCCATTAGAATGGGATGTTTGGGGGATGATTTCCAGGTCTTGGGTTTCAGCTCTAAATGAAAAGTTCAAGAAATGAAAATCCTTGTCTGTCTTTTAAAGC
TTGGTGTAGTGTAATCTTGCTTGTATTGACTTTGTATGAAATGAAACTGGAGCAAATATGAGGTTTGTTGAAGATCTGGTTGAGATAATCTAGACACGTTTGTTTCAAGT
GATATTCGGTGAATATGATTGTGGTTCTTGAA

Protein sequence

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MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNCIVKFPDFVLG
QLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDEDDDDDDDEEYNVEQEEKKA

ClCG10G005100 (gene) of Watermelon (Charleston Gray) v2.5 genome