; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG10G005560 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG10G005560
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionprotein LHCP TRANSLOCATION DEFECT
Genome locationCG_Chr10:6875123..6877129
RNA-Seq ExpressionClCG10G005560
SyntenyClCG10G005560
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0090391 - granum assembly (biological process)
GO:0009570 - chloroplast stroma (cellular component)
GO:0009941 - chloroplast envelope (cellular component)
InterPro domainsIPR036770 - Ankyrin repeat-containing domain superfamily
IPR044242 - Protein LHCP TRANSLOCATION DEFECT-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152919.1 protein LHCP TRANSLOCATION DEFECT [Cucumis sativus]1.5e-8392.86Show/hide
Query:  MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCT+SINLTPRS NSRPP KLGSHFLGLQS+LRW+SPV+IGPSNGSRATCWFN RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTA+DR  NEEIKDFILNFS KKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA

XP_008463435.1 PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo]2.8e-8292.26Show/hide
Query:  MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCTTSINLTPRS NSRPP KL SHFLGLQS+LRW+SP++IGPSNGSRATCWFN RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTAIDR  NEEIKDFIL FS KKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA

XP_022932181.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata]9.1e-8192.26Show/hide
Query:  MASLSCT-TSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P SLNSRPPLKLGS FLGLQS+LRWVSP+AIGPSNGSRATCWFN RQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDR PN+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK

XP_022985270.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima]2.7e-8091.67Show/hide
Query:  MASLSCT-TSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P S NSRPPLKLGS FLGLQS+LRWVSP+AIGPSNGSRATCWFN RQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDR PN+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK

XP_038903413.1 protein LHCP TRANSLOCATION DEFECT [Benincasa hispida]4.4e-8393.45Show/hide
Query:  MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCT S+NLTPRS NSRPP KL S FLGLQS+LRWVSPVAIGPSNGSRATCWFN RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDR PNEEIKDFILN SVK A
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA

TrEMBL top hitse value%identityAlignment
A0A0A0L309 ANK_REP_REGION domain-containing protein7.3e-8492.86Show/hide
Query:  MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCT+SINLTPRS NSRPP KLGSHFLGLQS+LRW+SPV+IGPSNGSRATCWFN RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTA+DR  NEEIKDFILNFS KKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA

A0A1S3CJ75 protein LHCP TRANSLOCATION DEFECT1.4e-8292.26Show/hide
Query:  MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCTTSINLTPRS NSRPP KL SHFLGLQS+LRW+SP++IGPSNGSRATCWFN RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTAIDR  NEEIKDFIL FS KKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA

A0A5D3BT07 Protein LHCP TRANSLOCATION DEFECT1.4e-8292.26Show/hide
Query:  MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCTTSINLTPRS NSRPP KL SHFLGLQS+LRW+SP++IGPSNGSRATCWFN RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTAIDR  NEEIKDFIL FS KKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA

A0A6J1EVN2 protein LHCP TRANSLOCATION DEFECT4.4e-8192.26Show/hide
Query:  MASLSCT-TSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P SLNSRPPLKLGS FLGLQS+LRWVSP+AIGPSNGSRATCWFN RQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDR PN+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK

A0A6J1JAV9 protein LHCP TRANSLOCATION DEFECT1.3e-8091.67Show/hide
Query:  MASLSCT-TSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P S NSRPPLKLGS FLGLQS+LRWVSP+AIGPSNGSRATCWFN RQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDR PN+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK

SwissProt top hitse value%identityAlignment
A2YLX7 Protein LHCP TRANSLOCATION DEFECT5.2e-4760Show/hide
Query:  MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSP---VAIGPSNGS---RATCWFNF-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV
        MAS+ CT  ++    S ++    +         + L W+ P    A+ P++ S     TC+F F  ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAV
Subjt:  MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSP---VAIGPSNGS---RATCWFNF-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV

Query:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA
        EGTYDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DR   ++ ++FIL F+   A
Subjt:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA

A3BKF2 Protein LHCP TRANSLOCATION DEFECT5.2e-4760Show/hide
Query:  MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSP---VAIGPSNGS---RATCWFNF-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV
        MAS+ CT  ++    S ++    +         + L W+ P    A+ P++ S     TC+F F  ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAV
Subjt:  MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSP---VAIGPSNGS---RATCWFNF-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV

Query:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA
        EGTYDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DR   ++ ++FIL F+   A
Subjt:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA

Q8VY88 Protein LHCP TRANSLOCATION DEFECT4.7e-5665.68Show/hide
Query:  SLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        S SC  S+  +  S  S  P  L S FLG ++    + P  +GPSNGSR TCWF F +N   AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY K
Subjt:  SLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA
        MEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA+Y VKD DGRTAIDR  +EEI+D IL +S +KA
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA

Arabidopsis top hitse value%identityAlignment
AT1G50900.1 Ankyrin repeat family protein3.4e-5765.68Show/hide
Query:  SLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        S SC  S+  +  S  S  P  L S FLG ++    + P  +GPSNGSR TCWF F +N   AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY K
Subjt:  SLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA
        MEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA+Y VKD DGRTAIDR  +EEI+D IL +S +KA
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCCTCTCCTGTACTACTTCCATAAATCTCACCCCAAGATCCTTAAATTCTCGCCCCCCATTGAAATTGGGTTCCCATTTTCTTGGTCTTCAATCCAGC
CTCCGATGGGTTTCACCCGTCGCCATTGGACCCTCTAATGGGTCTAGAGCAACGTGCTGGTTCAATTTTAGGCAAAATGCCGAAGGTGCAGGCATTTATGGCAGC
CAGTCCCGAGATGACTTCAACAGAGACGATGTTGAGCAGTATTTCAACTACATGGGAATGCTGGCAGTGGAGGGCACATATGACAAAATGGAGGCTCTGTTGAGC
CAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGGGCTAATTATGATGTGAAA
GATGTAGATGGTCGAACTGCCATTGATAGAGTACCTAATGAAGAAATTAAGGATTTTATTCTTAATTTTTCTGTTAAAAAGGCATGA
mRNA sequenceShow/hide mRNA sequence
CACATTTTCTTCTTACAAAACTTGCACAAACTCAGCCATGGCTTCCCTCTCCTGTACTACTTCCATAAATCTCACCCCAAGATCCTTAAATTCTCGCCCCCCATT
GAAATTGGGTTCCCATTTTCTTGGTCTTCAATCCAGCCTCCGATGGGTTTCACCCGTCGCCATTGGACCCTCTAATGGGTCTAGAGCAACGTGCTGGTTCAATTT
TAGGCAAAATGCCGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGATGACTTCAACAGAGACGATGTTGAGCAGTATTTCAACTACATGGGAATGCTGGCAGT
GGAGGGCACATATGACAAAATGGAGGCTCTGTTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGA
GGAGCTATTGAGAGCTGGGGCTAATTATGATGTGAAAGATGTAGATGGTCGAACTGCCATTGATAGAGTACCTAATGAAGAAATTAAGGATTTTATTCTTAATTT
TTCTGTTAAAAAGGCATGATTTGGTTGGAAATGGCTCTGTTTTGATAGGTTTAGAAAGAGGCTTAAGATTTGTATTCTCACTGCCTTCTGATGTTAATCATATTG
TATTTAAATTGTACACCTGTTTTCATCCATTTGGGAATGGCTTGGAGATGTAAAATCTTGTTTATAG
Protein sequenceShow/hide protein sequence
MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLS
QDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA