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ClCG10G005990 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG10G005990
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionProtein TIC 214
Genome locationCG_Chr10:7993583..7994036
RNA-Seq ExpressionClCG10G005990
SyntenyClCG10G005990
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
GO:0009528 - plastid inner membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QZL38653.1 Ycf1 protein [Citrullus naudinianus]6.6e-1469.05Show/hide
Query:  MLRNNGQLFIDSIKK---KLLLNPFPIMKQIKK---ELIKQI----KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS
        M R NGQLFIDSIKK   K + N     ++I K    LI  I    KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS
Subjt:  MLRNNGQLFIDSIKK---KLLLNPFPIMKQIKK---ELIKQI----KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS

QZL38742.1 Ycf1 protein [Citrullus ecirrhosus]6.6e-1469.05Show/hide
Query:  MLRNNGQLFIDSIKK---KLLLNPFPIMKQIKK---ELIKQI----KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS
        M R NGQLFIDSIKK   K + N     ++I K    LI  I    KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS
Subjt:  MLRNNGQLFIDSIKK---KLLLNPFPIMKQIKK---ELIKQI----KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS

YP_009420853.1 Ycf1 [Citrullus colocynthis]5.0e-1469.05Show/hide
Query:  MLRNNGQLFIDSIKKKL---LLNPFPIMKQIKK---ELIKQI----KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS
        M R NGQLFIDSIKK L   + N     ++I K    LI  I    KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS
Subjt:  MLRNNGQLFIDSIKKKL---LLNPFPIMKQIKK---ELIKQI----KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS

YP_009431615.1 Ycf1 [Citrullus amarus]6.6e-1469.05Show/hide
Query:  MLRNNGQLFIDSIKK---KLLLNPFPIMKQIKK---ELIKQI----KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS
        M R NGQLFIDSIKK   K + N     ++I K    LI  I    KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS
Subjt:  MLRNNGQLFIDSIKK---KLLLNPFPIMKQIKK---ELIKQI----KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS

YP_009431701.1 Ycf1 [Citrullus rehmii]5.0e-1469.05Show/hide
Query:  MLRNNGQLFIDSIKKKL---LLNPFPIMKQIKK---ELIKQI----KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS
        M R NGQLFIDSIKK L   + N     ++I K    LI  I    KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS
Subjt:  MLRNNGQLFIDSIKKKL---LLNPFPIMKQIKK---ELIKQI----KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS

TrEMBL top hitse value%identityAlignment
A0A1P8LDD3 Ycf13.2e-1469.05Show/hide
Query:  MLRNNGQLFIDSIKK---KLLLNPFPIMKQIKK---ELIKQI----KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS
        M R NGQLFIDSIKK   K + N     ++I K    LI  I    KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS
Subjt:  MLRNNGQLFIDSIKK---KLLLNPFPIMKQIKK---ELIKQI----KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS

A0A249RX64 Protein TIC 2143.2e-1469.05Show/hide
Query:  MLRNNGQLFIDSIKK---KLLLNPFPIMKQIKK---ELIKQI----KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS
        M R NGQLFIDSIKK   K + N     ++I K    LI  I    KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS
Subjt:  MLRNNGQLFIDSIKK---KLLLNPFPIMKQIKK---ELIKQI----KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS

A0A249RXF8 Protein TIC 2142.4e-1469.05Show/hide
Query:  MLRNNGQLFIDSIKKKL---LLNPFPIMKQIKK---ELIKQI----KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS
        M R NGQLFIDSIKK L   + N     ++I K    LI  I    KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS
Subjt:  MLRNNGQLFIDSIKKKL---LLNPFPIMKQIKK---ELIKQI----KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS

A0A343F2F2 Protein TIC 2142.4e-1469.05Show/hide
Query:  MLRNNGQLFIDSIKKKL---LLNPFPIMKQIKK---ELIKQI----KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS
        M R NGQLFIDSIKK L   + N     ++I K    LI  I    KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS
Subjt:  MLRNNGQLFIDSIKKKL---LLNPFPIMKQIKK---ELIKQI----KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS

A0A7T3QP51 Uncharacterized protein7.1e-1466.67Show/hide
Query:  MLRNNGQLFIDSIKKKL---LLNPFPIMKQIKK---ELIKQI----KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS
        M R NGQLFIDSIKKKL   + N     ++I K    LI  I    KSLSNI+NKNGKIFWDLSYLSQAYLFY LSQTQ+INLS
Subjt:  MLRNNGQLFIDSIKKKL---LLNPFPIMKQIKK---ELIKQI----KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLS

SwissProt top hitse value%identityAlignment
P12222 Protein TIC 2142.7e-1048.54Show/hide
Query:  RNNGQLFIDSIKKKL-------LLNPFPIMKQIKKELIKQI-KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLSNCSST---RNITFRIKTKES
        R N QLF++S  K +        +N   I  Q K   I  I KSL NIS KN  IF+DLSYLSQAY+FYKLSQ QVINLS   S       +F +KTK  
Subjt:  RNNGQLFIDSIKKKL-------LLNPFPIMKQIKKELIKQI-KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLSNCSST---RNITFRIKTKES

Query:  SKF
          F
Subjt:  SKF

Q33BW4 Protein TIC 2142.4e-1149.49Show/hide
Query:  RNNGQLFIDSIKKKLLLNPFPIMKQIKKELIKQI----KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLSNCSST---RNITFRIKTKESSKF
        R N QLF++S  K  L++ +    +I ++ I  I    KSL NIS KN  IF+DLSYLSQAY+FYKLSQTQVINLS   S       +F +KTK    F
Subjt:  RNNGQLFIDSIKKKLLLNPFPIMKQIKKELIKQI----KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLSNCSST---RNITFRIKTKESSKF

Q3C1P6 Protein TIC 2142.7e-1048.54Show/hide
Query:  RNNGQLFIDSIKKKL-------LLNPFPIMKQIKKELIKQI-KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLSNCSST---RNITFRIKTKES
        R N QLF++S  K +        +N   I  Q K   I  I KSL NIS KN  IF+DLSYLSQAY+FYKLSQ QVINLS   S       +F +KTK  
Subjt:  RNNGQLFIDSIKKKL-------LLNPFPIMKQIKKELIKQI-KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLSNCSST---RNITFRIKTKES

Query:  SKF
          F
Subjt:  SKF

Q7YJS6 Protein TIC 2147.8e-1042.24Show/hide
Query:  RNNGQLFIDSIKKKLLLNPFPIMKQIKKELIKQI----------KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVIN---LSNCSSTRNITFRIKTK
        R N QLF +S KK  +L+ +    Q KKE I +           K  SNISNK  +I+WDLS LSQAYLFYKLSQTQVIN   L +    R++  R + +
Subjt:  RNNGQLFIDSIKKKLLLNPFPIMKQIKKELIKQI----------KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVIN---LSNCSSTRNITFRIKTK

Query:  E--SSKFLNDKSMEKL
        +   ++ + D   +KL
Subjt:  E--SSKFLNDKSMEKL

Q8S8U2 Protein TIC 2141.9e-1149.52Show/hide
Query:  RNNGQLFIDSIKKKLLLNPFPIMKQIKKELI---KQI-------KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLSNCSST---RNITFRIKTK
        R N QLF++S  K  L++ +    +I +E I   K+I       KSL NISNKN  IF+DLSYLSQAY+FYKLSQTQVINLS   S       +F +KTK
Subjt:  RNNGQLFIDSIKKKLLLNPFPIMKQIKKELI---KQI-------KSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLSNCSST---RNITFRIKTK

Query:  ESSKF
            F
Subjt:  ESSKF

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAGGAATAATGGGCAACTTTTTATTGATTCAATAAAAAAAAAACTTTTACTAAATCCATTTCCAATAATGAAGCAAATCAAGAAAGAATTGATAAAACAAATCAA
ATCACTTTCCAATATTAGTAATAAAAACGGAAAGATCTTTTGGGATTTATCATACTTGTCGCAAGCATATTTATTTTACAAATTATCACAAACACAAGTTATTAACTTAT
CTAATTGTTCAAGCACACGAAATATTACATTCCGAATTAAAACAAAAGAATCTTCAAAATTCTTGAATGATAAATCAATGGAAAAACTGGTTAAGAGGTCATTATCACTA
CGATTTAGATCCGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGAGGAATAATGGGCAACTTTTTATTGATTCAATAAAAAAAAAACTTTTACTAAATCCATTTCCAATAATGAAGCAAATCAAGAAAGAATTGATAAAACAAATCAA
ATCACTTTCCAATATTAGTAATAAAAACGGAAAGATCTTTTGGGATTTATCATACTTGTCGCAAGCATATTTATTTTACAAATTATCACAAACACAAGTTATTAACTTAT
CTAATTGTTCAAGCACACGAAATATTACATTCCGAATTAAAACAAAAGAATCTTCAAAATTCTTGAATGATAAATCAATGGAAAAACTGGTTAAGAGGTCATTATCACTA
CGATTTAGATCCGATTAG
Protein sequenceShow/hide protein sequence
MLRNNGQLFIDSIKKKLLLNPFPIMKQIKKELIKQIKSLSNISNKNGKIFWDLSYLSQAYLFYKLSQTQVINLSNCSSTRNITFRIKTKESSKFLNDKSMEKLVKRSLSL
RFRSD