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ClCG10G007770 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG10G007770
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationCG_Chr10:12060726..12061157
RNA-Seq ExpressionClCG10G007770
SyntenyClCG10G007770
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFS33695.1 hypothetical protein Acr_00g0030110 [Actinidia rufa]2.1e-2544.53Show/hide
Query:  MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTL
        +G+IV +T+A  +W +L + Y ++S+  +  L+  LQ I KD LT   Y+ KF+ + + L++I EP+++ +H+ Y L GLG +YN FVTSIQ++   P++
Subjt:  MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTL

Query:  EDVRTLLLSYDYRLERQNSVDQLNNIQANLANLRFNQ
        E+V +LLLSYD RLERQ++ D L+++QANLANL + +
Subjt:  EDVRTLLLSYDYRLERQNSVDQLNNIQANLANLRFNQ

PON47862.1 hypothetical protein TorRG33x02_321990 [Trema orientale]5.5e-2647.45Show/hide
Query:  MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTL
        MG+IV + +A+ +W +L Q Y SSS  ++  L+ +LQ + KD LT  +Y+ K K+I + L+A+ EP+S K+H+ Y+  GL  EYNAFVTSI  R D   L
Subjt:  MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTL

Query:  EDVRTLLLSYDYRLERQNSVDQLNNIQANLANLRFNQ
        E++ +LLLSY++RLE QN+  QL+++QANLA+L  N+
Subjt:  EDVRTLLLSYDYRLERQNSVDQLNNIQANLANLRFNQ

XP_022148871.1 uncharacterized protein LOC111017438 [Momordica charantia]1.8e-3267.89Show/hide
Query:  QLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTLEDVRTLLLSYDYRLERQNSVDQLNNIQANLANLR
        ++Q++ KD L+++QYL K K+I+ KLS+I EPIS K+HISYI+EGLG+EYNAFVTSIQNR D+ TLEDVRTLLL+YDYRLE+QNSVDQLN +QAN+ANL+
Subjt:  QLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTLEDVRTLLLSYDYRLERQNSVDQLNNIQANLANLR

Query:  FNQNSNNRR
         N+ S + R
Subjt:  FNQNSNNRR

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]9.3e-3452.52Show/hide
Query:  MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTL
        MGE+VS  T + +W SL + Y+S +  +++ LK +LQ + KD  +++QYL K K+I+DK +A+ EP+S+++H++++L+GLG EYNAFVTSI NR D P+L
Subjt:  MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTL

Query:  EDVRTLLLSYDYRLERQNSVDQLNNIQANLANLRFNQNS
        EDVR+LLL+Y+ RL++QN+VDQLN  QANL NL    NS
Subjt:  EDVRTLLLSYDYRLERQNSVDQLNNIQANLANLRFNQNS

XP_038887133.1 uncharacterized protein LOC120077323 [Benincasa hispida]4.3e-3153.52Show/hide
Query:  MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTL
        MGEIV + +A+ +W +LR  YESSS   ++    QLQKI KD LT++QYL + KD+ D  +AI EP+S+++H+SYILEGLG EYN FV+SI NR + P++
Subjt:  MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTL

Query:  EDVRTLLLSYDYRLERQNSVDQLNNIQANLANLRFNQNSNNR
         DVR LL++YD RLE+Q + D L  IQAN+A+L    NS NR
Subjt:  EDVRTLLLSYDYRLERQNSVDQLNNIQANLANLRFNQNSNNR

TrEMBL top hitse value%identityAlignment
A0A2P5BGF8 Uncharacterized protein2.6e-2647.45Show/hide
Query:  MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTL
        MG+IV + +A+ +W +L Q Y SSS  ++  L+ +LQ + KD LT  +Y+ K K+I + L+A+ EP+S K+H+ Y+  GL  EYNAFVTSI  R D   L
Subjt:  MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTL

Query:  EDVRTLLLSYDYRLERQNSVDQLNNIQANLANLRFNQ
        E++ +LLLSY++RLE QN+  QL+++QANLA+L  N+
Subjt:  EDVRTLLLSYDYRLERQNSVDQLNNIQANLANLRFNQ

A0A6J1D6N7 uncharacterized protein LOC1110174388.5e-3367.89Show/hide
Query:  QLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTLEDVRTLLLSYDYRLERQNSVDQLNNIQANLANLR
        ++Q++ KD L+++QYL K K+I+ KLS+I EPIS K+HISYI+EGLG+EYNAFVTSIQNR D+ TLEDVRTLLL+YDYRLE+QNSVDQLN +QAN+ANL+
Subjt:  QLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTLEDVRTLLLSYDYRLERQNSVDQLNNIQANLANLR

Query:  FNQNSNNRR
         N+ S + R
Subjt:  FNQNSNNRR

A0A6J1DQX7 uncharacterized protein LOC1110223154.5e-3452.52Show/hide
Query:  MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTL
        MGE+VS  T + +W SL + Y+S +  +++ LK +LQ + KD  +++QYL K K+I+DK +A+ EP+S+++H++++L+GLG EYNAFVTSI NR D P+L
Subjt:  MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTL

Query:  EDVRTLLLSYDYRLERQNSVDQLNNIQANLANLRFNQNS
        EDVR+LLL+Y+ RL++QN+VDQLN  QANL NL    NS
Subjt:  EDVRTLLLSYDYRLERQNSVDQLNNIQANLANLRFNQNS

A0A7J0DER3 Uncharacterized protein1.0e-2544.53Show/hide
Query:  MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTL
        +G+IV +T+A  +W +L + Y ++S+  +  L+  LQ I KD LT   Y+ KF+ + + L++I EP+++ +H+ Y L GLG +YN FVTSIQ++   P++
Subjt:  MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTL

Query:  EDVRTLLLSYDYRLERQNSVDQLNNIQANLANLRFNQ
        E+V +LLLSYD RLERQ++ D L+++QANLANL + +
Subjt:  EDVRTLLLSYDYRLERQNSVDQLNNIQANLANLRFNQ

A0A7J0E8R3 Uncharacterized protein1.0e-2544.53Show/hide
Query:  MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTL
        +G+IV +T+A  +W +L + Y ++S+  +  L+  LQ I KD LT   Y+ KF+ + + L++I EP+++ +H+ Y L GLG +YN FVTSIQ++   P++
Subjt:  MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTL

Query:  EDVRTLLLSYDYRLERQNSVDQLNNIQANLANLRFNQ
        E+V +LLLSYD RLERQ++ D L+++QANLANL + +
Subjt:  EDVRTLLLSYDYRLERQNSVDQLNNIQANLANLRFNQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)5.5e-0823.48Show/hide
Query:  GEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTLE
        G  V+ +T+  +W  ++  + ++   + L L  +L+      + +  Y  K K ++D L  +  P++ +N + Y+L GL  +++  +  I++R   P+ +
Subjt:  GEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTLE

Query:  DVRTLLLSYDYRLER
        D  T+L   + RL+R
Subjt:  DVRTLLLSYDYRLER

AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)1.4e-0825.2Show/hide
Query:  TAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTLEDVRTLLL
        TA  +W SL   +  +   + L  + +L+    D L++ +Y  K K +SD L+ +  PIS +  + ++L GL  +Y+  +  I+++   P+  + R++LL
Subjt:  TAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTLEDVRTLLL

Query:  SYDYRLERQNSVDQLNNIQANLANLRF
          + RL  ++     +    +L+N+ F
Subjt:  SYDYRLERQNSVDQLNNIQANLANLRF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGAAATAGTATCCTTCACAACTGCATATTATATGTGGCATTCACTTCGCCAATCATATGAGTCATCATCATACATACAAGTTCTCAGTCTTAAAGTCCAGCTACA
GAAAATTTGGAAGGACAGTCTTACTATCACACAATATTTGGTCAAATTTAAAGATATTTCTGATAAGTTGTCTGCGATCAGTGAACCCATATCTCATAAAAACCACATCT
CCTATATTTTAGAGGGTCTTGGAGTTGAGTACAATGCTTTTGTCACCTCCATCCAAAACAGGGGGGATATTCCAACGCTTGAGGATGTTCGCACACTTCTTCTCAGTTAT
GATTATCGTCTTGAACGACAAAACTCAGTGGATCAGTTGAATAATATACAAGCAAATTTGGCCAATCTTCGATTTAATCAGAATTCAAACAATCGGCGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGAAATAGTATCCTTCACAACTGCATATTATATGTGGCATTCACTTCGCCAATCATATGAGTCATCATCATACATACAAGTTCTCAGTCTTAAAGTCCAGCTACA
GAAAATTTGGAAGGACAGTCTTACTATCACACAATATTTGGTCAAATTTAAAGATATTTCTGATAAGTTGTCTGCGATCAGTGAACCCATATCTCATAAAAACCACATCT
CCTATATTTTAGAGGGTCTTGGAGTTGAGTACAATGCTTTTGTCACCTCCATCCAAAACAGGGGGGATATTCCAACGCTTGAGGATGTTCGCACACTTCTTCTCAGTTAT
GATTATCGTCTTGAACGACAAAACTCAGTGGATCAGTTGAATAATATACAAGCAAATTTGGCCAATCTTCGATTTAATCAGAATTCAAACAATCGGCGATAG
Protein sequenceShow/hide protein sequence
MGEIVSFTTAYYMWHSLRQSYESSSYIQVLSLKVQLQKIWKDSLTITQYLVKFKDISDKLSAISEPISHKNHISYILEGLGVEYNAFVTSIQNRGDIPTLEDVRTLLLSY
DYRLERQNSVDQLNNIQANLANLRFNQNSNNRR