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ClCG10G008560 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG10G008560
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionClassical arabinogalactan protein 9
Genome locationCG_Chr10:18554912..18555430
RNA-Seq ExpressionClCG10G008560
SyntenyClCG10G008560
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053440.1 classical arabinogalactan protein 9 [Cucumis melo var. makuwa]3.8e-5084.88Show/hide
Query:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTPPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS
        MKMGFQFV+ LALFATSCMAQAPG+APAQPP+ PAVPPPSTPPPAASPPPATPPPATPPPATPP ATPPPA    +TPP  S+PPS PPAS PTSP P+S
Subjt:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTPPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS

Query:  PTSSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA
        P+S P+APPKEGP S PTSSPPSPPPEGNVPT SPGPSPPPPPPEGNGAASVSRGMMVGGAVAGA LAM+FA
Subjt:  PTSSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA

KAG6600667.1 hypothetical protein SDJN03_05900, partial [Cucurbita argyrosperma subsp. sororia]2.2e-3774.73Show/hide
Query:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTPPAVPPPSTPPPAASPPPATPPPA-TPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPA
        MKMG QF++VLA  ATS MAQAPG+APAQPPT PAVPPPSTPPPAASPPPATPPPA TPPPATPP ATPPPATPP ATPP A TPPS PPA+ PTSPA  
Subjt:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTPPAVPPPSTPPPAASPPPATPPPA-TPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPA

Query:  SPTSSPSAPPKEGPTSSP---------TSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA
         PTSSP+ PPKEGP SSP         T+SPPSPP EGNVP+G+PGP+  PPPPE NGA S+SR  MVG AV+G LLAMVFA
Subjt:  SPTSSPSAPPKEGPTSSP---------TSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA

TYK14854.1 vegetative cell wall protein gp1 [Cucumis melo var. makuwa]3.8e-5084.88Show/hide
Query:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTPPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS
        MKMGFQFV+ LALFATSCMAQAPG+APAQPP+ PAVPPPSTPPPAASPPPATPPPATPPPATPP ATPPPA    +TPP  S+PPS PPAS PTSP P+S
Subjt:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTPPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS

Query:  PTSSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA
        P+S P+APPKEGP S PTSSPPSPPPEGNVPT SPGPSPPPPPPEGNGAASVSRGMMVGGAVAGA LAM+FA
Subjt:  PTSSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA

XP_008455676.1 PREDICTED: vegetative cell wall protein gp1 [Cucumis melo]4.2e-4984.71Show/hide
Query:  MGFQFVLVLALFATSCMAQAPGSAPAQPPTPPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPT
        MGFQFV+ LALFATSCMAQAPG+APAQPP+ PAVPPPSTPPPAASPPPATPPPATPPPATPP ATPPPA    +TPP  S+PPS PPAS PTSP P+SP+
Subjt:  MGFQFVLVLALFATSCMAQAPGSAPAQPPTPPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPT

Query:  SSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA
        S P+APPKEGP S PTSSPPSPPPEGNVPT SPGPSPPPPPPEGNGAASVSRGMMVGGAVAGA LAM+FA
Subjt:  SSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA

XP_023545089.1 classical arabinogalactan protein 4-like [Cucurbita pepo subsp. pepo]1.1e-3675.14Show/hide
Query:  MGFQFVLVLALFATSCMAQAPGSAPAQPPTPPAVPPPSTPPPAASPPPATPPP-ATPPPATPPVATPPPATPPVATPP---PASTPPSSPPASAPTSPAP
        MG QF+++LA  ATS MAQAPG+APAQPPT PAVPPPSTPPPAASPPPATPPP ATPPPATPP ATPPPATPP ATPP   P S+PPS PPA+ PTSPA 
Subjt:  MGFQFVLVLALFATSCMAQAPGSAPAQPPTPPAVPPPSTPPPAASPPPATPPP-ATPPPATPPVATPPPATPPVATPP---PASTPPSSPPASAPTSPAP

Query:  ASPTSSPSAPPKEGPTSSP---TSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA
          PTSSP+ PPKEGP SSP   T+SPPSPP EGNVP+G+PGP+  PPPPE NGA S+SR  MVG AV+G LLAMVFA
Subjt:  ASPTSSPSAPPKEGPTSSP---TSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA

TrEMBL top hitse value%identityAlignment
A0A0A0L0L1 Uncharacterized protein1.4e-5085.47Show/hide
Query:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTPPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS
        MKMGFQFV+ LALFATSCMAQAPG+APAQPP+ PAVPPPSTPPPAASPPPATPPPATPPPATPP ATPPPA    +TPP  S+PPS PPAS PTSP P+S
Subjt:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTPPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS

Query:  PTSSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA
        P+S P+APPKEGP S PTSSPPSPPPEGNVPT SPGPSPPPPPPEGNGAASVSRGMMVGGAVAGA LAMVFA
Subjt:  PTSSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA

A0A1S3C1K1 vegetative cell wall protein gp12.0e-4984.71Show/hide
Query:  MGFQFVLVLALFATSCMAQAPGSAPAQPPTPPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPT
        MGFQFV+ LALFATSCMAQAPG+APAQPP+ PAVPPPSTPPPAASPPPATPPPATPPPATPP ATPPPA    +TPP  S+PPS PPAS PTSP P+SP+
Subjt:  MGFQFVLVLALFATSCMAQAPGSAPAQPPTPPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPT

Query:  SSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA
        S P+APPKEGP S PTSSPPSPPPEGNVPT SPGPSPPPPPPEGNGAASVSRGMMVGGAVAGA LAM+FA
Subjt:  SSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA

A0A5A7UE17 Classical arabinogalactan protein 91.9e-5084.88Show/hide
Query:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTPPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS
        MKMGFQFV+ LALFATSCMAQAPG+APAQPP+ PAVPPPSTPPPAASPPPATPPPATPPPATPP ATPPPA    +TPP  S+PPS PPAS PTSP P+S
Subjt:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTPPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS

Query:  PTSSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA
        P+S P+APPKEGP S PTSSPPSPPPEGNVPT SPGPSPPPPPPEGNGAASVSRGMMVGGAVAGA LAM+FA
Subjt:  PTSSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA

A0A5D3CV77 Vegetative cell wall protein gp11.9e-5084.88Show/hide
Query:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTPPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS
        MKMGFQFV+ LALFATSCMAQAPG+APAQPP+ PAVPPPSTPPPAASPPPATPPPATPPPATPP ATPPPA    +TPP  S+PPS PPAS PTSP P+S
Subjt:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTPPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS

Query:  PTSSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA
        P+S P+APPKEGP S PTSSPPSPPPEGNVPT SPGPSPPPPPPEGNGAASVSRGMMVGGAVAGA LAM+FA
Subjt:  PTSSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA

A0A6J1J5L5 classical arabinogalactan protein 4-like2.4e-3472.57Show/hide
Query:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTPPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS
        MKMGFQFV+VLALFATS MAQAPG+APAQPPT PAVPPPSTPPP  +       PATPPPA    ATPPPATPP A  PP S PPSSP    PT P PAS
Subjt:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTPPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS

Query:  PTSSPSAPPKEGPTSSPT---SSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA
        P +SP+ PPKEGP SSPT   +SPPSPP EG VP+ SPGP+ PPPPP  NGAA+VSRG+MVGGAVAGALLAMVFA
Subjt:  PTSSPSAPPKEGPTSSPT---SSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G10430.1 arabinogalactan protein 42.0e-0449.4Show/hide
Query:  QFVLVLALFATSCMAQAPGSAPAQPPTPPAVPPPSTPPPAASPPP-ATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPTSS
        Q  L+LALFATS +AQAP       PTP A PPP+TPPP A+PPP ATPPPA    ATP  ATPPPA    ATP PA+TPPS  P     SPA   PT+S
Subjt:  QFVLVLALFATSCMAQAPGSAPAQPPTPPAVPPPSTPPPAASPPP-ATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPTSS

Query:  PSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA
        P AP  EGPT SP+S              +PGPS   P P    AA  ++    G A A  + A V A
Subjt:  PSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATGGGTTTCCAATTTGTGTTGGTTTTAGCCTTATTTGCCACTTCTTGTATGGCTCAGGCTCCCGGTAGCGCTCCGGCTCAGCCGCCCACCCCCCCCGCCGTCCC
TCCGCCATCTACTCCTCCCCCAGCCGCCTCCCCACCTCCAGCCACCCCTCCTCCTGCAACCCCACCACCGGCCACCCCTCCAGTCGCAACCCCACCACCGGCCACCCCTC
CAGTCGCCACCCCACCACCAGCTTCAACCCCACCATCATCACCGCCAGCTTCAGCTCCCACATCTCCCGCCCCAGCATCACCTACATCGTCTCCGAGCGCGCCACCAAAG
GAGGGTCCGACCTCATCTCCAACTTCATCACCGCCATCACCACCACCGGAAGGAAATGTCCCTACGGGAAGCCCAGGACCGAGCCCGCCACCACCCCCACCCGAAGGAAA
TGGCGCAGCCAGCGTTAGCCGGGGAATGATGGTGGGTGGCGCAGTGGCCGGAGCTTTGTTGGCAATGGTATTTGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAATGGGTTTCCAATTTGTGTTGGTTTTAGCCTTATTTGCCACTTCTTGTATGGCTCAGGCTCCCGGTAGCGCTCCGGCTCAGCCGCCCACCCCCCCCGCCGTCCC
TCCGCCATCTACTCCTCCCCCAGCCGCCTCCCCACCTCCAGCCACCCCTCCTCCTGCAACCCCACCACCGGCCACCCCTCCAGTCGCAACCCCACCACCGGCCACCCCTC
CAGTCGCCACCCCACCACCAGCTTCAACCCCACCATCATCACCGCCAGCTTCAGCTCCCACATCTCCCGCCCCAGCATCACCTACATCGTCTCCGAGCGCGCCACCAAAG
GAGGGTCCGACCTCATCTCCAACTTCATCACCGCCATCACCACCACCGGAAGGAAATGTCCCTACGGGAAGCCCAGGACCGAGCCCGCCACCACCCCCACCCGAAGGAAA
TGGCGCAGCCAGCGTTAGCCGGGGAATGATGGTGGGTGGCGCAGTGGCCGGAGCTTTGTTGGCAATGGTATTTGCTTAG
Protein sequenceShow/hide protein sequence
MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTPPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPTSSPSAPPK
EGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA