; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG10G017877 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG10G017877
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase domain-containing protein
Genome locationCG_Chr10:32833144..32835926
RNA-Seq ExpressionClCG10G017877
SyntenyClCG10G017877
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBN69746.1 VIRB2-interacting protein 2 [Prunus dulcis]8.6e-6245.7Show/hide
Query:  FLDIVLRIKGFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPIGQSSFSINHIQFADDTLL
        F+D VL  KGFG  WR+WI GCL +AN+S+++NGRPRGK   +R +RQGDPLSPFLF +V + LSR++  +           G     I+H+QFADDT+ 
Subjt:  FLDIVLRIKGFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPIGQSSFSINHIQFADDTLL

Query:  F---------NLFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLNTFGCKRGFWPSSYLGLPLGGNSSSVAFWQPVVKRFQHKLHNWKYAYITKGG
        F         NL  ++ +F   SG+ IN +K  L+GI++ D  +++    +GC  G WP  YLGLPLGGN  ++ FW PVV++ +++L  WK A ++KGG
Subjt:  F---------NLFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLNTFGCKRGFWPSSYLGLPLGGNSSSVAFWQPVVKRFQHKLHNWKYAYITKGG

Query:  RHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAIL
        R T+IQA L S+P YY+SLFR P  V + ++KL RDF WEG  G    H V+W ++
Subjt:  RHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAIL

RVW33074.1 putative ribonuclease H protein [Vitis vinifera]8.1e-6828.93Show/hide
Query:  MKFLSWNVRGLNCWRKRTMVKKLIQQQNSDIVLLQETKLSSVVSLVIKTIWSSAYIGWTSLDA----------------------IDSLAVSLADGF---
        MK +SWN RGL   +KR +VK  ++ +  D+V+ QETK        + ++W++    W +L A                      + S +VS+       
Subjt:  MKFLSWNVRGLNCWRKRTMVKKLIQQQNSDIVLLQETKLSSVVSLVIKTIWSSAYIGWTSLDA----------------------IDSLAVSLADGF---

Query:  -SFKLTAIYGPSYNAYHADFWQELDDLAG-----------FGVI----------------------IGLLVLCDIPLSNGRFTWSSSFSSRKIVYKSSEL
         S  L+A+YGP+ +A   DFW EL D+AG           F VI                      I    L D+PL +  FTW S+     +  +    
Subjt:  -SFKLTAIYGPSYNAYHADFWQELDDLAG-----------FGVI----------------------IGLLVLCDIPLSNGRFTWSSSFSSRKIVYKSSEL

Query:  LPLNDWREQ------------HRI--TFLWLYLREALFGAPALSDLKIHGCKTLLFVLWLRFGG-------------VKHPI-------------TDWPG
        L  N+W +             HRI     W  +R +  G    S LKI GC  L+    L  GG             +K  I               W  
Subjt:  LPLNDWREQ------------HRI--TFLWLYLREALFGAPALSDLKIHGCKTLLFVLWLRFGG-------------VKHPI-------------TDWPG

Query:  HGL----------------MMKLHGLKLAMREW--------------------NNSYHR---ETVTLS--------------------------------
         GL                ++K   L+L  R W                    N +Y R   ET+  +                                
Subjt:  HGL----------------MMKLHGLKLAMREW--------------------NNSYHR---ETVTLS--------------------------------

Query:  -------------DLEFLDIVLRIKGFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIAR--PI
                       +FLD VL +KGFG  WR W+ GCLSS ++++++NG  +G +  +R +RQGDPLSPFLF IVA+ LSR+L    +    +     +
Subjt:  -------------DLEFLDIVLRIKGFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIAR--PI

Query:  GQSSFSINHIQFADDTLLFN---------LFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLNTFGCKRGFWPSSYLGLPLGGNSSSVAFWQPVVK
        G++   ++H+QFADDT+ F+         L +V+ +F   SGLK+NL KS + GI++    + +      CK   WP  YLGLPLGGN  +  FW PV++
Subjt:  GQSSFSINHIQFADDTLLFN---------LFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLNTFGCKRGFWPSSYLGLPLGGNSSSVAFWQPVVK

Query:  RFQHKLHNWKYAYITKGGRHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAIL
        R   +L  W+ AY++ GGR TLIQ+ L+ +P Y+LSLF+ P+SV + ++++ RDF W G       H VNW ++
Subjt:  RFQHKLHNWKYAYITKGGRHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAIL

VVA13439.1 Hypothetical predicted protein, partial [Prunus dulcis]8.6e-6245.7Show/hide
Query:  FLDIVLRIKGFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPIGQSSFSINHIQFADDTLL
        F+D VL  KGFG  WR+WI GCL +AN+S+++NGRPRGK   +R +RQGDPLSPFLF +V + LSR++  +           G     I+H+QFADDT+ 
Subjt:  FLDIVLRIKGFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPIGQSSFSINHIQFADDTLL

Query:  F---------NLFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLNTFGCKRGFWPSSYLGLPLGGNSSSVAFWQPVVKRFQHKLHNWKYAYITKGG
        F         NL  ++ +F   SG+ IN +K  L+GI++ D  +++    +GC  G WP  YLGLPLGGN  ++ FW PVV++ +++L  WK A ++KGG
Subjt:  F---------NLFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLNTFGCKRGFWPSSYLGLPLGGNSSSVAFWQPVVKRFQHKLHNWKYAYITKGG

Query:  RHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAIL
        R T+IQA L S+P YY+SLFR P  V + ++KL RDF WEG  G    H V+W ++
Subjt:  RHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAIL

VVA21938.1 Hypothetical predicted protein, partial [Prunus dulcis]8.6e-6245.7Show/hide
Query:  FLDIVLRIKGFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPIGQSSFSINHIQFADDTLL
        F+D VL  KGFG  WR+WI GCL +AN+S+++NGRPRGK   +R +RQGDPLSPFLF +V + LSR++  +           G     I+H+QFADDT+ 
Subjt:  FLDIVLRIKGFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPIGQSSFSINHIQFADDTLL

Query:  F---------NLFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLNTFGCKRGFWPSSYLGLPLGGNSSSVAFWQPVVKRFQHKLHNWKYAYITKGG
        F         NL  ++ +F   SG+ IN +K  L+GI++ D  +++    +GC  G WP  YLGLPLGGN  ++ FW PVV++ +++L  WK A ++KGG
Subjt:  F---------NLFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLNTFGCKRGFWPSSYLGLPLGGNSSSVAFWQPVVKRFQHKLHNWKYAYITKGG

Query:  RHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAIL
        R T+IQA L S+P YY+SLFR P  V + ++KL RDF WEG  G    H V+W ++
Subjt:  RHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAIL

XP_009335445.1 PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri]7.1e-6447.66Show/hide
Query:  FLDIVLRIKGFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPIGQSSFSINHIQFADDTLL
        FLD +L+ KGFG+ WR W+ GC +SAN+SI++NGRP+GK   +RR+RQGDPLSPFLF +V + LSRL+  +    L     IGQ    I+H+QFADDT+ 
Subjt:  FLDIVLRIKGFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPIGQSSFSINHIQFADDTLL

Query:  F---------NLFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLNTFGCKRGFWPSSYLGLPLGGNSSSVAFWQPVVKRFQHKLHNWKYAYITKGG
        F         NL +V+++F   SGLKIN AK  + GI+    ++    +++GC+ G WP  YLGLPLGG   ++ FW PVV++ + +L +WK A+++KGG
Subjt:  F---------NLFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLNTFGCKRGFWPSSYLGLPLGGNSSSVAFWQPVVKRFQHKLHNWKYAYITKGG

Query:  RHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAIL
        R TLIQ  L SLP YY+SLF+ P  VI  L+KL + F WEG       H V W I+
Subjt:  RHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAIL

TrEMBL top hitse value%identityAlignment
A0A438DC91 Putative ribonuclease H protein3.9e-6828.93Show/hide
Query:  MKFLSWNVRGLNCWRKRTMVKKLIQQQNSDIVLLQETKLSSVVSLVIKTIWSSAYIGWTSLDA----------------------IDSLAVSLADGF---
        MK +SWN RGL   +KR +VK  ++ +  D+V+ QETK        + ++W++    W +L A                      + S +VS+       
Subjt:  MKFLSWNVRGLNCWRKRTMVKKLIQQQNSDIVLLQETKLSSVVSLVIKTIWSSAYIGWTSLDA----------------------IDSLAVSLADGF---

Query:  -SFKLTAIYGPSYNAYHADFWQELDDLAG-----------FGVI----------------------IGLLVLCDIPLSNGRFTWSSSFSSRKIVYKSSEL
         S  L+A+YGP+ +A   DFW EL D+AG           F VI                      I    L D+PL +  FTW S+     +  +    
Subjt:  -SFKLTAIYGPSYNAYHADFWQELDDLAG-----------FGVI----------------------IGLLVLCDIPLSNGRFTWSSSFSSRKIVYKSSEL

Query:  LPLNDWREQ------------HRI--TFLWLYLREALFGAPALSDLKIHGCKTLLFVLWLRFGG-------------VKHPI-------------TDWPG
        L  N+W +             HRI     W  +R +  G    S LKI GC  L+    L  GG             +K  I               W  
Subjt:  LPLNDWREQ------------HRI--TFLWLYLREALFGAPALSDLKIHGCKTLLFVLWLRFGG-------------VKHPI-------------TDWPG

Query:  HGL----------------MMKLHGLKLAMREW--------------------NNSYHR---ETVTLS--------------------------------
         GL                ++K   L+L  R W                    N +Y R   ET+  +                                
Subjt:  HGL----------------MMKLHGLKLAMREW--------------------NNSYHR---ETVTLS--------------------------------

Query:  -------------DLEFLDIVLRIKGFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIAR--PI
                       +FLD VL +KGFG  WR W+ GCLSS ++++++NG  +G +  +R +RQGDPLSPFLF IVA+ LSR+L    +    +     +
Subjt:  -------------DLEFLDIVLRIKGFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIAR--PI

Query:  GQSSFSINHIQFADDTLLFN---------LFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLNTFGCKRGFWPSSYLGLPLGGNSSSVAFWQPVVK
        G++   ++H+QFADDT+ F+         L +V+ +F   SGLK+NL KS + GI++    + +      CK   WP  YLGLPLGGN  +  FW PV++
Subjt:  GQSSFSINHIQFADDTLLFN---------LFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLNTFGCKRGFWPSSYLGLPLGGNSSSVAFWQPVVK

Query:  RFQHKLHNWKYAYITKGGRHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAIL
        R   +L  W+ AY++ GGR TLIQ+ L+ +P Y+LSLF+ P+SV + ++++ RDF W G       H VNW ++
Subjt:  RFQHKLHNWKYAYITKGGRHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAIL

A0A803P465 Uncharacterized protein6.2e-6647.31Show/hide
Query:  EFLDIVLRIKGFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPIGQSSFSINHIQFADDTL
        EF+D+VL  KGFG +WR WI GC+SS ++S+ +N  PRGK   +R +RQGDPLSPFLF +VA+ L R+   + S G      +G+    ++H+QFADDT+
Subjt:  EFLDIVLRIKGFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPIGQSSFSINHIQFADDTL

Query:  LF--------NLFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLNTFGCKRGFWPSSYLGLPLGGNSSSVAFWQPVVKRFQHKLHNWKYAYITKGG
         F         L  V+  F   SGLKINL+KS+LLGI + +  + +     GC+ G WP  YLG+PLGG+    +FW+PV+ +   +L  WK A+++KGG
Subjt:  LF--------NLFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLNTFGCKRGFWPSSYLGLPLGGNSSSVAFWQPVVKRFQHKLHNWKYAYITKGG

Query:  RHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAILQRPQ
        R TLIQ+ LSSLP Y+LSLF+AP SV   L+K+ RDF WEG+   GG H V W  + RP+
Subjt:  RHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAILQRPQ

A0A803P8A0 Uncharacterized protein2.0e-6447.33Show/hide
Query:  DLEFLDIVLRIKGFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPIGQSSFSINHIQFADD
        D  FLD+VLR KGFG  WR WI GC+SS ++SI +NGR RGK   +R +RQGDPLSPFLF +VA+ L R++  +          IG+ +  ++H+QFADD
Subjt:  DLEFLDIVLRIKGFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPIGQSSFSINHIQFADD

Query:  TLLF--------NLFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLNTFGCKRGFWPSSYLGLPLGGNSSSVAFWQPVVKRFQHKLHNWKYAYITK
        TL F         L  ++  F   SGLK+NL KS+LLGI +SD  + +  N  GC+ G WP +YLG+PLGG+     FW+PV+ +   ++  WK +++++
Subjt:  TLLF--------NLFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLNTFGCKRGFWPSSYLGLPLGGNSSSVAFWQPVVKRFQHKLHNWKYAYITK

Query:  GGRHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAILQRPQ
        GGR TLIQ+ LSSLP YYLSLF+ P  V+  L+K+ RDFFWEG    GG H V W  + +P+
Subjt:  GGRHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAILQRPQ

A0A803P8A0 Uncharacterized protein8.3e-0242.19Show/hide
Query:  MKFLSWNVRGLNCWRKRTMVKKLIQQQNSDIVLLQETKLSSVVSLVIKTIWSSAYIGWTSLDAI
        MK L+WN+RG     KR  +K  I + N D+V+LQE K ++V    I +IW S +  W  L AI
Subjt:  MKFLSWNVRGLNCWRKRTMVKKLIQQQNSDIVLLQETKLSSVVSLVIKTIWSSAYIGWTSLDAI

A0A803P8A0 Uncharacterized protein3.4e-6445.42Show/hide
Query:  DLEFLDIVLRIKGFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPIGQSSFSINHIQFADD
        D +FLD+VL+ KGFG +WR WI GC+SS ++S+++NGR RGK   +R +RQGDPLSPFLF +V + L RL+  ++         +G+ +  I+H+QFADD
Subjt:  DLEFLDIVLRIKGFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPIGQSSFSINHIQFADD

Query:  TLLF--------NLFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLNTFGCKRGFWPSSYLGLPLGGNSSSVAFWQPVVKRFQHKLHNWKYAYITK
        TL F         L +++  F   SGLK+NL KS+LLGI + +  + +     GC+ G WP +YLG+PLGG+     FW+PV+ +   +L  WK +++++
Subjt:  TLLF--------NLFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLNTFGCKRGFWPSSYLGLPLGGNSSSVAFWQPVVKRFQHKLHNWKYAYITK

Query:  GGRHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAILQRPQ
        GGR  LIQ+ LSSLP YYLSLF+AP  V+  ++K+ RDFFWEG    GG H V W  + +P+
Subjt:  GGRHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAILQRPQ

M5XUF8 Reverse transcriptase domain-containing protein (Fragment)3.2e-6245.7Show/hide
Query:  FLDIVLRIKGFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPIGQSSFSINHIQFADDTLL
        F+D VL  KGFG  WR+WI GCL +AN+S+++NGRPRGKI  +R +RQGDPLSPFLF +V + LSR++  +           G     ++H+QFADDT+ 
Subjt:  FLDIVLRIKGFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPIGQSSFSINHIQFADDTLL

Query:  F---------NLFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLNTFGCKRGFWPSSYLGLPLGGNSSSVAFWQPVVKRFQHKLHNWKYAYITKGG
        F         NL  ++ +F   SG+KIN +K  L+GI++ D  +++    +GC+ G WP SYLGLPLGGN  ++ FW PVV++ +++L  WK A ++KGG
Subjt:  F---------NLFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLNTFGCKRGFWPSSYLGLPLGGNSSSVAFWQPVVKRFQHKLHNWKYAYITKGG

Query:  RHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAIL
        R T+IQA L S+P YY+S+FR P  V + ++KL RDF WEG       H V+W ++
Subjt:  RHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAIL

SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein9.7e-0823.77Show/hide
Query:  GFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSL-GLTIARPIGQSSFSINHIQFADDTLLF-------
        G   ++   I         +IILNG+           RQG PLSP LF IV   L+R +     + G+ + +   + S       FADD +++       
Subjt:  GFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSL-GLTIARPIGQSSFSINHIQFADDTLLF-------

Query:  --NLFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLN-----TFGCKRGFWPSSYLGLPLGGNSSSV--AFWQPVVKRFQHKLHNWKYAYITKGGR
          NL  +I  F   SG KIN+ KS+   ++ ++ + +  +      T   KR      YLG+ L  +   +    ++P++K  +   + WK    +  GR
Subjt:  --NLFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLN-----TFGCKRGFWPSSYLGLPLGGNSSSV--AFWQPVVKRFQHKLHNWKYAYITKGGR

Query:  HTLIQATLSSLPTYYLSL--FRAPSSVISCLDKLTRDFFWEGTR
          +++  +     Y  +    + P +  + L+K T  F W   R
Subjt:  HTLIQATLSSLPTYYLSL--FRAPSSVISCLDKLTRDFFWEGTR

P0C2F6 Putative ribonuclease H protein At1g657503.7e-0730.86Show/hide
Query:  VVKRFQHKLHNWKYAYITKGGRHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAILQRPQ
        +++R   ++  W+   ++  GR TL +A LSS+P + +S    P S+++ LD+L+R F W  T      H V W+ +  P+
Subjt:  VVKRFQHKLHNWKYAYITKGGRHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAILQRPQ

P92555 Uncharacterized mitochondrial protein AtMg012504.0e-0945.59Show/hide
Query:  ILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPIGQSSFSINHIQFADDT
        I+NG P+G + P+R +RQGDPLSP+LFI+    LS L   +   G      +  +S  INH+ FADDT
Subjt:  ILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPIGQSSFSINHIQFADDT

Q03274 Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment)5.0e-0433.06Show/hide
Query:  NWINGCLSSANYSIILN-GRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPIGQSSFSINHIQFADDTLLFNLFDVIHIFECAS-
        N+I G LS +  +I +  G    KI   R ++QGDPLSPFLF  V + L   L  +  +G T    IG+    +  + FADD LL    DV+     A+ 
Subjt:  NWINGCLSSANYSIILN-GRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPIGQSSFSINHIQFADDTLLFNLFDVIHIFECAS-

Query:  -------GLKINLAKSELLGIHIS
               G+ +N  KS  + +  S
Subjt:  -------GLKINLAKSELLGIHIS

Arabidopsis top hitse value%identityAlignment
ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)2.8e-1045.59Show/hide
Query:  ILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPIGQSSFSINHIQFADDT
        I+NG P+G + P+R +RQGDPLSP+LFI+    LS L   +   G      +  +S  INH+ FADDT
Subjt:  ILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPIGQSSFSINHIQFADDT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTTCTTTCATGGAATGTTCGTGGACTCAACTGTTGGAGGAAACGTACTATGGTTAAAAAGCTCATTCAACAACAAAACTCGGATATTGTGCTTTTACAA
GAAACAAAGCTGTCTTCTGTGGTTTCCCTTGTGATTAAAACAATATGGAGCTCTGCTTACATTGGTTGGACATCCTTGGATGCAATTGATTCTTTAGCGGTATCT
TTGGCTGATGGTTTCTCTTTTAAACTTACGGCTATTTATGGCCCGTCCTATAATGCCTACCATGCTGATTTTTGGCAAGAGCTTGATGACTTGGCTGGTTTTGGT
GTGATAATTGGGTTATTGGTGCTCTGTGATATTCCTTTATCAAATGGCCGCTTTACATGGTCCAGTTCTTTTTCCTCACGGAAAATTGTCTACAAAAGTTCAGAA
TTGTTACCCTTAAACGATTGGAGAGAACAACATCGGATCACTTTCCTTTGGCTTTATCTTCGGGAAGCATTGTTTGGGGCCCCTGCCCTTTCAGATTTGAAAATT
CATGGCTGCAAAACCCTTCTTTTCGTTCTATGGTTGAGGTTTGGTGGAGTCAAACACCCCATTACAGATTGGCCAGGACATGGTTTAATGATGAAATTGCATGGT
TTGAAATTGGCTATGCGGGAATGGAATAACTCATATCATAGAGAGACTGTTACTCTTTCGGATCTTGAGTTTCTTGATATCGTTTTGCGTATTAAAGGCTTCGGT
TCTCTTTGGCGTAATTGGATTAACGGTTGTCTCTCTAGTGCAAACTATTCCATTATTTTAAATGGTCGTCCTCGTGGCAAGATCATCCCTACTCGTCGTATTAGA
CAGGGAGATCCCCTTTCTCCCTTTTTATTTATCATTGTTGCAAACTGCTTGAGTCGTCTTCTTGCTCACAGTTCCTCTTTGGGCCTCACTATTGCTCGTCCTATT
GGTCAGTCATCCTTTTCGATTAATCATATACAGTTTGCAGACGATACATTGCTCTTTAATTTATTTGATGTGATTCACATTTTTGAATGTGCTTCTGGACTCAAA
ATCAACCTTGCTAAGAGTGAGCTCCTTGGGATACACATCTCTGATATTGAGATAGATAAATGGTTGAACACTTTTGGTTGTAAAAGAGGTTTTTGGCCTTCTTCT
TATCTTGGTCTTCCGTTGGGTGGTAACTCTTCATCTGTAGCTTTTTGGCAGCCTGTGGTCAAACGATTTCAGCATAAACTTCACAACTGGAAGTATGCTTATATA
ACGAAAGGGGGGAGACATACGCTTATTCAAGCTACTCTTTCTAGCCTCCCTACTTATTACTTGTCGTTGTTTCGTGCTCCCTCCTCTGTTATTAGTTGCCTTGAT
AAGCTGACGCGTGATTTCTTTTGGGAAGGTACTAGAGGTGATGGTGGCATGCACAATGTTAATTGGGCCATTTTGCAGCGGCCCCAATTATATCAAGTGGCATGG
GGATTGGTAACTATAAATGTCGTAATTCTGCTCTTCTTGCAAAATGGACGTGGTGTTTCATTATTGAATTGGATTCCTTATGGAGACAACTTATTTCAAAGTTCT
ATTCACCTGATTGTATTTGGCCCTCTCCGATATCTCGTGGGTCATCTAAAGCACCTTGGAGATCCATTTGCCATTATATGGATTTGGTTGTGGATCGGGTCTCCC
GTCGCCTTGGAGATGGTGTTTCTACATCTTTTTGGCATGATTCTTGGCTCAGATGTGGTGTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAATTTCTTTCATGGAATGTTCGTGGACTCAACTGTTGGAGGAAACGTACTATGGTTAAAAAGCTCATTCAACAACAAAACTCGGATATTGTGCTTTTACAA
GAAACAAAGCTGTCTTCTGTGGTTTCCCTTGTGATTAAAACAATATGGAGCTCTGCTTACATTGGTTGGACATCCTTGGATGCAATTGATTCTTTAGCGGTATCT
TTGGCTGATGGTTTCTCTTTTAAACTTACGGCTATTTATGGCCCGTCCTATAATGCCTACCATGCTGATTTTTGGCAAGAGCTTGATGACTTGGCTGGTTTTGGT
GTGATAATTGGGTTATTGGTGCTCTGTGATATTCCTTTATCAAATGGCCGCTTTACATGGTCCAGTTCTTTTTCCTCACGGAAAATTGTCTACAAAAGTTCAGAA
TTGTTACCCTTAAACGATTGGAGAGAACAACATCGGATCACTTTCCTTTGGCTTTATCTTCGGGAAGCATTGTTTGGGGCCCCTGCCCTTTCAGATTTGAAAATT
CATGGCTGCAAAACCCTTCTTTTCGTTCTATGGTTGAGGTTTGGTGGAGTCAAACACCCCATTACAGATTGGCCAGGACATGGTTTAATGATGAAATTGCATGGT
TTGAAATTGGCTATGCGGGAATGGAATAACTCATATCATAGAGAGACTGTTACTCTTTCGGATCTTGAGTTTCTTGATATCGTTTTGCGTATTAAAGGCTTCGGT
TCTCTTTGGCGTAATTGGATTAACGGTTGTCTCTCTAGTGCAAACTATTCCATTATTTTAAATGGTCGTCCTCGTGGCAAGATCATCCCTACTCGTCGTATTAGA
CAGGGAGATCCCCTTTCTCCCTTTTTATTTATCATTGTTGCAAACTGCTTGAGTCGTCTTCTTGCTCACAGTTCCTCTTTGGGCCTCACTATTGCTCGTCCTATT
GGTCAGTCATCCTTTTCGATTAATCATATACAGTTTGCAGACGATACATTGCTCTTTAATTTATTTGATGTGATTCACATTTTTGAATGTGCTTCTGGACTCAAA
ATCAACCTTGCTAAGAGTGAGCTCCTTGGGATACACATCTCTGATATTGAGATAGATAAATGGTTGAACACTTTTGGTTGTAAAAGAGGTTTTTGGCCTTCTTCT
TATCTTGGTCTTCCGTTGGGTGGTAACTCTTCATCTGTAGCTTTTTGGCAGCCTGTGGTCAAACGATTTCAGCATAAACTTCACAACTGGAAGTATGCTTATATA
ACGAAAGGGGGGAGACATACGCTTATTCAAGCTACTCTTTCTAGCCTCCCTACTTATTACTTGTCGTTGTTTCGTGCTCCCTCCTCTGTTATTAGTTGCCTTGAT
AAGCTGACGCGTGATTTCTTTTGGGAAGGTACTAGAGGTGATGGTGGCATGCACAATGTTAATTGGGCCATTTTGCAGCGGCCCCAATTATATCAAGTGGCATGG
GGATTGGTAACTATAAATGTCGTAATTCTGCTCTTCTTGCAAAATGGACGTGGTGTTTCATTATTGAATTGGATTCCTTATGGAGACAACTTATTTCAAAGTTCT
ATTCACCTGATTGTATTTGGCCCTCTCCGATATCTCGTGGGTCATCTAAAGCACCTTGGAGATCCATTTGCCATTATATGGATTTGGTTGTGGATCGGGTCTCCC
GTCGCCTTGGAGATGGTGTTTCTACATCTTTTTGGCATGATTCTTGGCTCAGATGTGGTGTACTAG
Protein sequenceShow/hide protein sequence
MKFLSWNVRGLNCWRKRTMVKKLIQQQNSDIVLLQETKLSSVVSLVIKTIWSSAYIGWTSLDAIDSLAVSLADGFSFKLTAIYGPSYNAYHADFWQELDDLAGFG
VIIGLLVLCDIPLSNGRFTWSSSFSSRKIVYKSSELLPLNDWREQHRITFLWLYLREALFGAPALSDLKIHGCKTLLFVLWLRFGGVKHPITDWPGHGLMMKLHG
LKLAMREWNNSYHRETVTLSDLEFLDIVLRIKGFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPI
GQSSFSINHIQFADDTLLFNLFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLNTFGCKRGFWPSSYLGLPLGGNSSSVAFWQPVVKRFQHKLHNWKYAYI
TKGGRHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAILQRPQLYQVAWGLVTINVVILLFLQNGRGVSLLNWIPYGDNLFQSS
IHLIVFGPLRYLVGHLKHLGDPFAIIWIWLWIGSPVALEMVFLHLFGMILGSDVVY