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ClCG11G000130 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG11G000130
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionWD repeat-containing protein RUP2-like
Genome locationCG_Chr11:205135..205491
RNA-Seq ExpressionClCG11G000130
SyntenyClCG11G000130
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR044616 - WD repeat-containing protein RUP1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571808.1 WD repeat-containing protein RUP2, partial [Cucurbita argyrosperma subsp. sororia]5.9e-1854.9Show/hide
Query:  MDLVVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTST
        +D +VGA GS D TVQVWD RCDG DCVAVVQPS   S + C    P    +      + +AYG D+ KM EA++V EGHAKTV YVKF+D  T+VS ST
Subjt:  MDLVVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTST

Query:  KG
         G
Subjt:  KG
XP_022952662.1 WD repeat-containing protein RUP2-like [Cucurbita moschata]5.9e-1854.9Show/hide
Query:  MDLVVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTST
        +D +VGA GS D TVQVWD RCDG DCVAVVQPS   S + C    P    +      + +AYG D+ KM EA++V EGHAKTV YVKF+D  T+VS ST
Subjt:  MDLVVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTST

Query:  KG
         G
Subjt:  KG
XP_022971842.1 WD repeat-containing protein RUP2-like [Cucurbita maxima]5.9e-1854.9Show/hide
Query:  MDLVVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTST
        +D +VGA GS D TVQVWD RCDG DCVAVVQPS   S + C    P    +      + +AYG D+ KM EA++V EGHAKTV YVKF+D  T+VS ST
Subjt:  MDLVVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTST

Query:  KG
         G
Subjt:  KG
XP_023554180.1 WD repeat-containing protein RUP2-like [Cucurbita pepo subsp. pepo]1.3e-1755.56Show/hide
Query:  VVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG
        +VGA GS D TVQVWD RCDG DCVAVVQPS   S + C    P    +      + +AYG D+ KM EA++V EGHAKTV YVKF+D  T+VS ST G
Subjt:  VVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG
XP_038887335.1 WD repeat-containing protein RUP2-like [Benincasa hispida]1.6e-1854.9Show/hide
Query:  MDLVVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTST
        +D VVGA GS D TVQVWD RCDGG+CVAVVQPS   S + C    P    +      + +AYG D+ KM E +VV EGH KTV YVKF+D  T+VS ST
Subjt:  MDLVVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTST

Query:  KG
         G
Subjt:  KG
TrEMBL top hitse value%identityAlignment
A0A0A0LHK2 Ubiquitin ligase protein cop11.1e-1754.55Show/hide
Query:  VVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG
        VVGA GS D TVQVWD RC+ G+CVAVVQPS   SA+ C    P    +      + +AYG D+ KM E +VV EGH KTV YVKF+D  T+VS ST G
Subjt:  VVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG
A0A5A7T553 WD repeat-containing protein RUP2-like4.1e-1753.54Show/hide
Query:  VVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG
        VVGA GS D TVQVWD RC+ G+CVAVVQPS   S + C    P    +      + +AYG D+ KM E +VV EGH KTV YVKF+D  T+VS ST G
Subjt:  VVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG
A0A6J1GKZ5 WD repeat-containing protein RUP2-like2.9e-1854.9Show/hide
Query:  MDLVVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTST
        +D +VGA GS D TVQVWD RCDG DCVAVVQPS   S + C    P    +      + +AYG D+ KM EA++V EGHAKTV YVKF+D  T+VS ST
Subjt:  MDLVVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTST

Query:  KG
         G
Subjt:  KG
A0A6J1I327 WD repeat-containing protein RUP2-like2.9e-1854.9Show/hide
Query:  MDLVVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTST
        +D +VGA GS D TVQVWD RCDG DCVAVVQPS   S + C    P    +      + +AYG D+ KM EA++V EGHAKTV YVKF+D  T+VS ST
Subjt:  MDLVVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLC-GIQPVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTST

Query:  KG
         G
Subjt:  KG
W9S7H7 E3 ubiquitin-protein ligase COP11.0e-1544Show/hide
Query:  VVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLCGIQ--PVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG
        V+ A GS D T+Q+WD RCDGG+CVA V+PS T+++ +C ++  P    +      + +AYG D  K+ + +++ +GH KTV YV+F+D RTMVS+ T G
Subjt:  VVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLCGIQ--PVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG
SwissProt top hitse value%identityAlignment
Q9FFA7 WD repeat-containing protein RUP21.0e-0936.36Show/hide
Query:  VGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLCGIQ--PVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG
        VGA GS D T+QVWD RC   + V VV+P+G   + +C ++  P           + + Y  D  K+ +  +  +GH KTV YV+F+D  T+V+  T G
Subjt:  VGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLCGIQ--PVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG
Q9LTJ6 WD repeat-containing protein RUP15.2e-0938.24Show/hide
Query:  VVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLCGIQPVQWQVGGSWM----REYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTST
        ++GA GS D TVQ+WD R +GG     V+P G   A +C ++   +  GGS +     +  AY  D  ++ + ++V +GH KTV Y +FMD  T+V+ ST
Subjt:  VVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLCGIQPVQWQVGGSWM----REYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTST

Query:  KG
         G
Subjt:  KG
Arabidopsis top hitse value%identityAlignment
AT5G23730.1 Transducin/WD40 repeat-like superfamily protein7.5e-1136.36Show/hide
Query:  VGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLCGIQ--PVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG
        VGA GS D T+QVWD RC   + V VV+P+G   + +C ++  P           + + Y  D  K+ +  +  +GH KTV YV+F+D  T+V+  T G
Subjt:  VGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLCGIQ--PVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKG
AT5G52250.1 Transducin/WD40 repeat-like superfamily protein3.7e-1038.24Show/hide
Query:  VVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLCGIQPVQWQVGGSWM----REYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTST
        ++GA GS D TVQ+WD R +GG     V+P G   A +C ++   +  GGS +     +  AY  D  ++ + ++V +GH KTV Y +FMD  T+V+ ST
Subjt:  VVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLCGIQPVQWQVGGSWM----REYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTST

Query:  KG
         G
Subjt:  KG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCTTGTAGTCGGTGCATTAGGGTCAAAAGACGACACGGTGCAAGTATGGGACGCACGCTGCGACGGTGGGGACTGCGTGGCGGTGGTGCAGCCAAGTGGTACTGA
GTCAGCTTTGTTGTGTGGAATTCAACCCGTACAATGGCAAGTTGGTGGGAGTTGGATGCGCGAATATGAAGCATACGGGGACGACCAGTACAAAATGGGGGAAGCAATTG
TGGTATCCGAAGGGCACGCGAAAACAGTGATGTATGTGAAATTCATGGACAGAAGGACAATGGTGTCAACGAGTACAAAGGGAGGGACGATCGTGTCGACTCGTAGGAAA
AGGAAAATGGTGGAAAAACATTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCTTGTAGTCGGTGCATTAGGGTCAAAAGACGACACGGTGCAAGTATGGGACGCACGCTGCGACGGTGGGGACTGCGTGGCGGTGGTGCAGCCAAGTGGTACTGA
GTCAGCTTTGTTGTGTGGAATTCAACCCGTACAATGGCAAGTTGGTGGGAGTTGGATGCGCGAATATGAAGCATACGGGGACGACCAGTACAAAATGGGGGAAGCAATTG
TGGTATCCGAAGGGCACGCGAAAACAGTGATGTATGTGAAATTCATGGACAGAAGGACAATGGTGTCAACGAGTACAAAGGGAGGGACGATCGTGTCGACTCGTAGGAAA
AGGAAAATGGTGGAAAAACATTGTTGA
Protein sequenceShow/hide protein sequence
MDLVVGALGSKDDTVQVWDARCDGGDCVAVVQPSGTESALLCGIQPVQWQVGGSWMREYEAYGDDQYKMGEAIVVSEGHAKTVMYVKFMDRRTMVSTSTKGGTIVSTRRK
RKMVEKHC