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ClCG11G001900 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG11G001900
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description40S ribosomal protein S30
Genome locationCG_Chr11:2009127..2009691
RNA-Seq ExpressionClCG11G001900
SyntenyClCG11G001900
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006846 - Ribosomal protein S30


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR64610.1 hypothetical protein CICLE_v10009868mg [Citrus clementina]3.2e-2774.23Show/hide
Query:  TLIFDLCVLAYETDEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        TL  D C L     E V++  +++    + L R AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  TLIFDLCVLAYETDEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

KAA0061505.1 Ribosomal protein S30 [Cucumis melo var. makuwa]2.3e-3390.59Show/hide
Query:  LAYETDEPVAEHPEEEKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        LA E ++PV  HPE +KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  LAYETDEPVAEHPEEEKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

KAF4346455.1 hypothetical protein G4B88_007409 [Cannabis sativa]4.6e-2692.75Show/hide
Query:  KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        K + +F MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

KDO55923.1 hypothetical protein CISIN_1g042287mg, partial [Citrus sinensis]3.2e-2774.23Show/hide
Query:  TLIFDLCVLAYETDEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        TL  D C L     E V++  +++    + L R AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  TLIFDLCVLAYETDEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

XP_004141043.2 40S ribosomal protein S30 [Cucumis sativus]2.5e-27100Show/hide
Query:  LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

TrEMBL top hitse value%identityAlignment
A0A067ELF8 40S ribosomal protein S30 (Fragment)1.6e-2774.23Show/hide
Query:  TLIFDLCVLAYETDEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        TL  D C L     E V++  +++    + L R AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  TLIFDLCVLAYETDEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

A0A0A0LFS8 40S ribosomal protein S301.2e-27100Show/hide
Query:  LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

A0A2H5PDI2 40S ribosomal protein S301.6e-2774.23Show/hide
Query:  TLIFDLCVLAYETDEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        TL  D C L     E V++  +++    + L R AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  TLIFDLCVLAYETDEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

A0A5A7V6N6 40S ribosomal protein S301.1e-3390.59Show/hide
Query:  LAYETDEPVAEHPEEEKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        LA E ++PV  HPE +KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  LAYETDEPVAEHPEEEKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

V4UK23 40S ribosomal protein S301.6e-2774.23Show/hide
Query:  TLIFDLCVLAYETDEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        TL  D C L     E V++  +++    + L R AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  TLIFDLCVLAYETDEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

SwissProt top hitse value%identityAlignment
P49689 40S ribosomal protein S301.7e-2696.77Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

P62860 40S ribosomal protein S308.2e-1879.31Show/hide
Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

P62861 40S ribosomal protein S308.2e-1879.31Show/hide
Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

P62862 40S ribosomal protein S308.2e-1879.31Show/hide
Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

P62866 40S ribosomal protein S308.2e-1879.31Show/hide
Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

Arabidopsis top hitse value%identityAlignment
AT2G19750.1 Ribosomal protein S30 family protein1.2e-2796.77Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

AT4G29390.1 Ribosomal protein S30 family protein1.2e-2796.77Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

AT5G56670.1 Ribosomal protein S30 family protein1.2e-2796.77Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATATGGGCTGGGCCGGCTGGATCAAATTTTACCGCGTCTGAGCAACCCACTACTATATATTTGTCTGACCAAAACCCTAACCCTAATTTTTGACCTTTGCGTTCT
AGCGTACGAAACCGACGAGCCGGTCGCCGAACATCCTGAAGAGGAGAAGTCGCTTATCAGATTCGCCATGGGTAAGGTTCATGGATCCTTGGCTCGTGCCGGTAAGGTGA
GAGGCCAGACACCAAAGGTTGCTAAACAAGACAAGAAGAAGAAGCCACGAGGACGTGCCCACAAAAGGATGCAATACAACCGCAGATTCGTCACTGCCGTTGTTGGCTTT
GGAAAGAAGAGAGGACCAAACTCCTCCGAGAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAATATGGGCTGGGCCGGCTGGATCAAATTTTACCGCGTCTGAGCAACCCACTACTATATATTTGTCTGACCAAAACCCTAACCCTAATTTTTGACCTTTGCGTTCT
AGCGTACGAAACCGACGAGCCGGTCGCCGAACATCCTGAAGAGGAGAAGTCGCTTATCAGATTCGCCATGGGTAAGGTTCATGGATCCTTGGCTCGTGCCGGTAAGGTGA
GAGGCCAGACACCAAAGGTTGCTAAACAAGACAAGAAGAAGAAGCCACGAGGACGTGCCCACAAAAGGATGCAATACAACCGCAGATTCGTCACTGCCGTTGTTGGCTTT
GGAAAGAAGAGAGGACCAAACTCCTCCGAGAAGTAA
Protein sequenceShow/hide protein sequence
MEYGLGRLDQILPRLSNPLLYICLTKTLTLIFDLCVLAYETDEPVAEHPEEEKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGF
GKKRGPNSSEK