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ClCG11G002500 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG11G002500
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionArabinogalactan protein 22, putative
Genome locationCG_Chr11:2609674..2612077
RNA-Seq ExpressionClCG11G002500
SyntenyClCG11G002500
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061559.1 putative Arabinogalactan protein 22 [Cucumis melo var. makuwa]2.9e-1782.26Show/hide
Query:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYI
        MSS+KLTA P VGF+FLI+LQLA+GHSH ISPA  GPSNDGAAIDQGIAYVLLL+ALA+TYI
Subjt:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYI

KAF8034376.1 hypothetical protein BT93_C0621 [Corymbia citriodora subsp. variegata]2.1e-1266.67Show/hide
Query:  KNMSSMKLTAAP-IVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIF
        + M++M+    P IVGFMFL LLQL+YG S   SPAP GPSNDG AIDQGIAYVLL  ALA+TY+F
Subjt:  KNMSSMKLTAAP-IVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIF

KAF9662510.1 hypothetical protein SADUNF_Sadunf18G0060600 [Salix dunnii]1.6e-1264.52Show/hide
Query:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYI
        M+SM+L A PI+GFMFL LL+  +G     SPAP GPSNDG  IDQGIAYVLL++ALA+TY+
Subjt:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYI

KCW79700.1 hypothetical protein EUGRSUZ_C01051 [Eucalyptus grandis]3.6e-1281.13Show/hide
Query:  IVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIF
        IVGFMFL LLQL YG S   SPAP GPSNDG AIDQGIAY LLLVALAVTY+F
Subjt:  IVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIF

KGN60622.1 hypothetical protein Csa_019490 [Cucumis sativus]2.6e-1887.1Show/hide
Query:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYI
        MSS+KLTA PIVGF+FLI+LQLA+GHSH ISPA AGPSNDGAAIDQGIAYVLLL+ALAVTYI
Subjt:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYI

TrEMBL top hitse value%identityAlignment
A0A059CP27 Uncharacterized protein1.8e-1281.13Show/hide
Query:  IVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIF
        IVGFMFL LLQL YG S   SPAP GPSNDG AIDQGIAY LLLVALAVTY+F
Subjt:  IVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIF

A0A067KBQ4 Uncharacterized protein2.3e-1268.25Show/hide
Query:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIF
        MS M L A PI+GFMFL LLQL +G +   SPA  GPS+DG  IDQGIAYVL+LVALAVTY+F
Subjt:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIF

A0A0A0LIU0 Uncharacterized protein1.3e-1887.1Show/hide
Query:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYI
        MSS+KLTA PIVGF+FLI+LQLA+GHSH ISPA AGPSNDGAAIDQGIAYVLLL+ALAVTYI
Subjt:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYI

A0A2C9UBX1 Uncharacterized protein6.7e-1265.08Show/hide
Query:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIF
        MS MKL AA   GFM   LLQL YG     SPAP GP++DG +IDQGIAY+LLLVALA+TY+F
Subjt:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIF

A0A5A7V7C0 Putative Arabinogalactan protein 221.4e-1782.26Show/hide
Query:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYI
        MSS+KLTA P VGF+FLI+LQLA+GHSH ISPA  GPSNDGAAIDQGIAYVLLL+ALA+TYI
Subjt:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYI

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 165.3e-0645.9Show/hide
Query:  SSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYI
        S   +T   +  F+F ++L LA   S  ++PAPA P++DG +IDQGIAY+L++VAL +TY+
Subjt:  SSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYI

Q8L9T8 Arabinogalactan protein 411.1e-0657.69Show/hide
Query:  IVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYI
        IV  +F ILL +A  H+   +PAPA P++DG  IDQGIAYVL+LVAL +TY+
Subjt:  IVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYI

Q9FK16 Arabinogalactan protein 229.7e-0849.18Show/hide
Query:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTY
        M+S+K     +  F+ + ++ L    SH  SPAPA P++DG +IDQGIAYVL++VALA+TY
Subjt:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTY

Q9M373 Arabinogalactan protein 202.2e-0441.07Show/hide
Query:  TAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYI
        + A I  F F+  +   +  +  ++PAP+ P++DG +IDQGIAY+L++VAL +TY+
Subjt:  TAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYI

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 163.8e-0745.9Show/hide
Query:  SSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYI
        S   +T   +  F+F ++L LA   S  ++PAPA P++DG +IDQGIAY+L++VAL +TY+
Subjt:  SSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYI

AT3G61640.1 arabinogalactan protein 201.6e-0541.07Show/hide
Query:  TAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYI
        + A I  F F+  +   +  +  ++PAP+ P++DG +IDQGIAY+L++VAL +TY+
Subjt:  TAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYI

AT5G24105.1 arabinogalactan protein 417.6e-0857.69Show/hide
Query:  IVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYI
        IV  +F ILL +A  H+   +PAPA P++DG  IDQGIAYVL+LVAL +TY+
Subjt:  IVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYI

AT5G53250.1 arabinogalactan protein 226.9e-0949.18Show/hide
Query:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTY
        M+S+K     +  F+ + ++ L    SH  SPAPA P++DG +IDQGIAYVL++VALA+TY
Subjt:  MSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTATGCCACAACGCAGCTTCGCAATTGGGCGTTCAGTCGCTTTCGTGTGCGTGCCCGAGTCAACGAGCCGCCAACTCAGTCAAACTCGCAAATTCTTCGAGTCGA
TTCGAAAAACATGAGTTCCATGAAGCTTACCGCCGCTCCGATCGTCGGATTCATGTTCTTGATTCTTCTTCAATTGGCTTACGGTCACTCCCACCATATTTCTCCGGCAC
CGGCGGGTCCTTCTAACGACGGAGCTGCAATTGACCAAGGGATTGCGTACGTTCTTCTTCTGGTTGCTCTTGCCGTTACTTACATCTTTTTTCTCCGCTTTATTGGTGAA
GAAATTGCGTTGGAGATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGTATGCCACAACGCAGCTTCGCAATTGGGCGTTCAGTCGCTTTCGTGTGCGTGCCCGAGTCAACGAGCCGCCAACTCAGTCAAACTCGCAAATTCTTCGAGTCGA
TTCGAAAAACATGAGTTCCATGAAGCTTACCGCCGCTCCGATCGTCGGATTCATGTTCTTGATTCTTCTTCAATTGGCTTACGGTCACTCCCACCATATTTCTCCGGCAC
CGGCGGGTCCTTCTAACGACGGAGCTGCAATTGACCAAGGGATTGCGTACGTTCTTCTTCTGGTTGCTCTTGCCGTTACTTACATCTTTTTTCTCCGCTTTATTGGTGAA
GAAATTGCGTTGGAGATTTGA
Protein sequenceShow/hide protein sequence
MQYATTQLRNWAFSRFRVRARVNEPPTQSNSQILRVDSKNMSSMKLTAAPIVGFMFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAVTYIFFLRFIGE
EIALEI