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ClCG11G003460 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG11G003460
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationCG_Chr11:3610784..3611227
RNA-Seq ExpressionClCG11G003460
SyntenyClCG11G003460
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE9462649.1 hypothetical protein C3L33_05434, partial [Rhododendron williamsianum]5.7e-0942.7Show/hide
Query:  WETPRATNRRFEKYMEWMISRGNTESLSFGGRVF-VAIEVMEER---GVGGGCVSGGGGEGGALSELFEFFLILDFDIDLGGLSSQHFA
        W   + T  +   +++ ++  G  +++ FG  VF  AIEV+EER   G GGGC  G GG GGA +  FEFF + DFD+D  G SSQH +
Subjt:  WETPRATNRRFEKYMEWMISRGNTESLSFGGRVF-VAIEVMEER---GVGGGCVSGGGGEGGALSELFEFFLILDFDIDLGGLSSQHFA

KAF3971077.1 hypothetical protein CMV_005285 [Castanea mollissima]5.0e-0557.41Show/hide
Query:  VFVAIEVMEER-GVGGGCVSGGGGEGGALSELFEFFLILDFDIDLGGLSSQHFA
        V VAIEV+EE  G GGG   GGGG GG  + LFEF  + D D DL  LSSQH +
Subjt:  VFVAIEVMEER-GVGGGCVSGGGGEGGALSELFEFFLILDFDIDLGGLSSQHFA

PLY73348.1 hypothetical protein LSAT_7X45900 [Lactuca sativa]2.5e-0447.69Show/hide
Query:  RGNTESLSF--GGRVFVAIEVMEERGVGGGCVSGGGGEGGALSELFEFFLILDFDIDLGGLSSQH
        RG   +L F  GGR    +EV+EERG  GG + GGGG GG L+  FEFF + DFD +      QH
Subjt:  RGNTESLSF--GGRVFVAIEVMEERGVGGGCVSGGGGEGGALSELFEFFLILDFDIDLGGLSSQH

TrEMBL top hitse value%identityAlignment
A0A2J6KE45 Uncharacterized protein1.2e-0447.69Show/hide
Query:  RGNTESLSF--GGRVFVAIEVMEERGVGGGCVSGGGGEGGALSELFEFFLILDFDIDLGGLSSQH
        RG   +L F  GGR    +EV+EERG  GG + GGGG GG L+  FEFF + DFD +      QH
Subjt:  RGNTESLSF--GGRVFVAIEVMEERGVGGGCVSGGGGEGGALSELFEFFLILDFDIDLGGLSSQH

A0A6A4M552 Retrotran_gag_3 domain-containing protein (Fragment)2.8e-0942.7Show/hide
Query:  WETPRATNRRFEKYMEWMISRGNTESLSFGGRVF-VAIEVMEER---GVGGGCVSGGGGEGGALSELFEFFLILDFDIDLGGLSSQHFA
        W   + T  +   +++ ++  G  +++ FG  VF  AIEV+EER   G GGGC  G GG GGA +  FEFF + DFD+D  G SSQH +
Subjt:  WETPRATNRRFEKYMEWMISRGNTESLSFGGRVF-VAIEVMEER---GVGGGCVSGGGGEGGALSELFEFFLILDFDIDLGGLSSQHFA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTACTACATTACCAACAAGAAGTTCACTTACTCTTCAGAATGGAAGCTTCTCCGATCGAAAGATCGCAGAATTAGCAGTAGCCTTCCACGACTCTTCAACA
AACGACGTCGATCAGAAGCGTCTGGACTTCAGACAGATCACACAGTGGGAAACGCCTAGGGCAACTAATCGGAGATTTGAGAAGTATATGGAATGGATGATATCA
AGAGGAAATACCGAGTCGCTGAGCTTTGGAGGCCGGGTCTTTGTTGCGATTGAGGTTATGGAGGAGAGAGGAGTTGGTGGAGGTTGTGTCAGTGGAGGCGGTGGC
GAGGGCGGCGCGTTGTCGGAGTTGTTCGAGTTCTTCCTTATCCTCGATTTTGACATCGATCTTGGTGGGTTGTCTTCTCAGCATTTTGCC
mRNA sequenceShow/hide mRNA sequence
ATGCTTACTACATTACCAACAAGAAGTTCACTTACTCTTCAGAATGGAAGCTTCTCCGATCGAAAGATCGCAGAATTAGCAGTAGCCTTCCACGACTCTTCAACA
AACGACGTCGATCAGAAGCGTCTGGACTTCAGACAGATCACACAGTGGGAAACGCCTAGGGCAACTAATCGGAGATTTGAGAAGTATATGGAATGGATGATATCA
AGAGGAAATACCGAGTCGCTGAGCTTTGGAGGCCGGGTCTTTGTTGCGATTGAGGTTATGGAGGAGAGAGGAGTTGGTGGAGGTTGTGTCAGTGGAGGCGGTGGC
GAGGGCGGCGCGTTGTCGGAGTTGTTCGAGTTCTTCCTTATCCTCGATTTTGACATCGATCTTGGTGGGTTGTCTTCTCAGCATTTTGCC
Protein sequenceShow/hide protein sequence
MLTTLPTRSSLTLQNGSFSDRKIAELAVAFHDSSTNDVDQKRLDFRQITQWETPRATNRRFEKYMEWMISRGNTESLSFGGRVFVAIEVMEERGVGGGCVSGGGG
EGGALSELFEFFLILDFDIDLGGLSSQHFA