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ClCG11G007200 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG11G007200
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description30S ribosomal protein S4, chloroplastic
Genome locationCG_Chr11:7974533..7974778
RNA-Seq ExpressionClCG11G007200
SyntenyClCG11G007200
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR002942 - RNA-binding S4 domain
IPR022801 - Ribosomal protein S4/S9
IPR036986 - RNA-binding S4 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AHM88823.1 ribosomal protein S4 [Lagenaria siceraria]1.6e-1180.43Show/hide
Query:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR
        MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRD   A  +++ R
Subjt:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR
QJD26647.1 ribosomal protein S4 [Trichosanthes rosthornii]1.3e-1180.43Show/hide
Query:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR
        MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRD   A  +++ R
Subjt:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR
YP_009430629.1 ribosomal protein S4 [Gynostemma cardiospermum]7.4e-1274Show/hide
Query:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQRIKEQ
        MASTIPQARQLVNHRHILVNG I+DIPSYRCKPRD   A G+++ R+  Q
Subjt:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQRIKEQ
YP_009752583.1 ribosomal protein S4 [Trichosanthes homophylla]1.3e-1180.43Show/hide
Query:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR
        MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRD   A  +++ R
Subjt:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR
YP_009752752.1 ribosomal protein S4 [Cyclantheropsis parviflora]7.4e-1280.43Show/hide
Query:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR
        MASTIPQARQLVNHRHILVNG IVDIPSYRCKPRD   A G+++ R
Subjt:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR
TrEMBL top hitse value%identityAlignment
A0A286KU05 30S ribosomal protein S4, chloroplastic3.6e-1274Show/hide
Query:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQRIKEQ
        MASTIPQARQLVNHRHILVNG I+DIPSYRCKPRD   A G+++ R+  Q
Subjt:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQRIKEQ
A0A291IAF5 30S ribosomal protein S4, chloroplastic3.6e-1274Show/hide
Query:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQRIKEQ
        MASTIPQARQLVNHRHILVNG I+DIPSYRCKPRD   A G+++ R+  Q
Subjt:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQRIKEQ
A0A6H0ESS9 30S ribosomal protein S4, chloroplastic3.6e-1280.43Show/hide
Query:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR
        MASTIPQARQLVNHRHILVNG IVDIPSYRCKPRD   A G+++ R
Subjt:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR
A0A6H0ETP8 30S ribosomal protein S4, chloroplastic6.1e-1280.43Show/hide
Query:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR
        MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRD   A  +++ R
Subjt:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR
A0A6M3RTQ8 30S ribosomal protein S4, chloroplastic6.1e-1280.43Show/hide
Query:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR
        MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRD   A  +++ R
Subjt:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR
SwissProt top hitse value%identityAlignment
A4GYR2 30S ribosomal protein S4, chloroplastic1.1e-1372Show/hide
Query:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQRIKEQ
        MASTIP+ARQLVNHRHILVNG IVDIPSYRCKPRD   A  +++ R+  Q
Subjt:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQRIKEQ
Q14FF5 30S ribosomal protein S4, chloroplastic1.1e-1372Show/hide
Query:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQRIKEQ
        MASTIP+ARQLVNHRHILVNG IVDIPSYRCKPRD   A  +++ R+  Q
Subjt:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQRIKEQ
Q49KZ6 30S ribosomal protein S4, chloroplastic2.4e-1378.26Show/hide
Query:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR
        MASTIPQARQLVNHRHILVNG IVDIPSYRCKPRD   A   ++ R
Subjt:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR
Q4VZH3 30S ribosomal protein S4, chloroplastic2.2e-1480.43Show/hide
Query:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR
        MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRD   A  +++ R
Subjt:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR
Q8S8X2 30S ribosomal protein S4, chloroplastic2.4e-1369.23Show/hide
Query:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQRIKEQLA
        MASTIP ARQLVNHRHILVNG IVDIPSYRCKPRD   A  +++ R   Q++
Subjt:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQRIKEQLA
Arabidopsis top hitse value%identityAlignment
ATCG00380.1 chloroplast ribosomal protein S49.3e-1371.74Show/hide
Query:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR
        MA TIPQARQLVNH HILVNG IVDIPSYRCKPRD      ++  R
Subjt:  MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCGACTATTCCTCAAGCCCGACAATTAGTTAATCATAGACATATTTTAGTTAATGGTTCTATAGTGGATATACCAAGTTATCGGTGCAAACCCCGAGATAGTGC
TAATGCAGTCGGTCAGAGACAGCAGCGGATAAAAGAGCAGCTAGCCCCCTTGGTTGGTTGGGGTCGGTTCTTTCCCTCAAAAAGAATGGAAGTAGGATTCGCTAACCAAA
GGGCCGGAGTCATTCACACCAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCGACTATTCCTCAAGCCCGACAATTAGTTAATCATAGACATATTTTAGTTAATGGTTCTATAGTGGATATACCAAGTTATCGGTGCAAACCCCGAGATAGTGC
TAATGCAGTCGGTCAGAGACAGCAGCGGATAAAAGAGCAGCTAGCCCCCTTGGTTGGTTGGGGTCGGTTCTTTCCCTCAAAAAGAATGGAAGTAGGATTCGCTAACCAAA
GGGCCGGAGTCATTCACACCAACTGA
Protein sequenceShow/hide protein sequence
MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQRIKEQLAPLVGWGRFFPSKRMEVGFANQRAGVIHTN