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ClCG11G007380 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG11G007380
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionBED-type domain-containing protein
Genome locationCG_Chr11:9061415..9065589
RNA-Seq ExpressionClCG11G007380
SyntenyClCG11G007380
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032566.1 uncharacterized protein E6C27_scaffold43053G00260 [Cucumis melo var. makuwa]1.2e-2974.75Show/hide
Query:  MVDSLDIQDKILATAELSKYKRVEGWFGQTLAIRQRDKISPVIVFIKYNRALKRRYNLREIVNPISLKDIDDSNEWLIGRMDDGFEEKDELLLERKNLS
        MV SLD+QDKIL  AELSKYKR E  FGQ LAIRQRDKI P  VFIKYNRALKRRYNLR+IV+PISL+DIDDSNEWLIGR+DD FEE+ EL+ +   L+
Subjt:  MVDSLDIQDKILATAELSKYKRVEGWFGQTLAIRQRDKISPVIVFIKYNRALKRRYNLREIVNPISLKDIDDSNEWLIGRMDDGFEEKDELLLERKNLS
KAA0062939.1 hypothetical protein E6C27_scaffold468G00330 [Cucumis melo var. makuwa]2.0e-2761.67Show/hide
Query:  MVDSLDIQDKILATAELSKYKRVEGWFGQTLAIRQRDKISPVI---------------------VFIKYNRALKRRYNLREIVNPISLKDIDDSNEWLIG
        MV SLD+QDKIL  AELS YKR E  FGQ LAIRQRDKISPV+                     +FIKYNRALKRRYNLR+IV+PISL+DIDDSNEWLIG
Subjt:  MVDSLDIQDKILATAELSKYKRVEGWFGQTLAIRQRDKISPVI---------------------VFIKYNRALKRRYNLREIVNPISLKDIDDSNEWLIG

Query:  RMDDGFEEKDELLLERKNLS
        R+DD  EE+DEL+ +   L+
Subjt:  RMDDGFEEKDELLLERKNLS
TYK03327.1 hypothetical protein E5676_scaffold6571G00020 [Cucumis melo var. makuwa]7.5e-2771.72Show/hide
Query:  MVDSLDIQDKILATAELSKYKRVEGWFGQTLAIRQRDKISPVIVFIKYNRALKRRYNLREIVNPISLKDIDDSNEWLIGRMDDGFEEKDELLLERKNLS
        MV SLDIQDKIL  AELSK+KR E  FGQ LAIRQR+KISP  VFIKYNRA+KRRYN+R+IV+PISL+DIDDSNE LIGR+DD  EE+DEL+ +   L+
Subjt:  MVDSLDIQDKILATAELSKYKRVEGWFGQTLAIRQRDKISPVIVFIKYNRALKRRYNLREIVNPISLKDIDDSNEWLIGRMDDGFEEKDELLLERKNLS
TYK16401.1 uncharacterized protein E5676_scaffold21G001960 [Cucumis melo var. makuwa]2.0e-2760.83Show/hide
Query:  MVDSLDIQDKILATAELSKYKRVEGWFGQTLAIRQRDKISPVI---------------------VFIKYNRALKRRYNLREIVNPISLKDIDDSNEWLIG
        MV SLD+Q+KIL  AELSKYKR E  FGQ LAIRQRDKISP++                     +FIKYNRALKRRYNLR+IV+PISL+DIDDSNEWLIG
Subjt:  MVDSLDIQDKILATAELSKYKRVEGWFGQTLAIRQRDKISPVI---------------------VFIKYNRALKRRYNLREIVNPISLKDIDDSNEWLIG

Query:  RMDDGFEEKDELLLERKNLS
        R+DD  EE+DEL+ +   L+
Subjt:  RMDDGFEEKDELLLERKNLS
TYK20918.1 hypothetical protein E5676_scaffold284G00600 [Cucumis melo var. makuwa]9.5e-3075.76Show/hide
Query:  MVDSLDIQDKILATAELSKYKRVEGWFGQTLAIRQRDKISPVIVFIKYNRALKRRYNLREIVNPISLKDIDDSNEWLIGRMDDGFEEKDELLLERKNLS
        MV SLDIQDKIL  AELSKYKR E  FGQ LAIRQRDKI P  VFIKYNRALKRRYNLR+IV+PISL+DIDDSNEWLIGR+DD FEE+ EL+ +   L+
Subjt:  MVDSLDIQDKILATAELSKYKRVEGWFGQTLAIRQRDKISPVIVFIKYNRALKRRYNLREIVNPISLKDIDDSNEWLIGRMDDGFEEKDELLLERKNLS
TrEMBL top hitse value%identityAlignment
A0A5A7SRA2 Uncharacterized protein6.0e-3074.75Show/hide
Query:  MVDSLDIQDKILATAELSKYKRVEGWFGQTLAIRQRDKISPVIVFIKYNRALKRRYNLREIVNPISLKDIDDSNEWLIGRMDDGFEEKDELLLERKNLS
        MV SLD+QDKIL  AELSKYKR E  FGQ LAIRQRDKI P  VFIKYNRALKRRYNLR+IV+PISL+DIDDSNEWLIGR+DD FEE+ EL+ +   L+
Subjt:  MVDSLDIQDKILATAELSKYKRVEGWFGQTLAIRQRDKISPVIVFIKYNRALKRRYNLREIVNPISLKDIDDSNEWLIGRMDDGFEEKDELLLERKNLS
A0A5A7VBF9 BED-type domain-containing protein9.5e-2861.67Show/hide
Query:  MVDSLDIQDKILATAELSKYKRVEGWFGQTLAIRQRDKISPVI---------------------VFIKYNRALKRRYNLREIVNPISLKDIDDSNEWLIG
        MV SLD+QDKIL  AELS YKR E  FGQ LAIRQRDKISPV+                     +FIKYNRALKRRYNLR+IV+PISL+DIDDSNEWLIG
Subjt:  MVDSLDIQDKILATAELSKYKRVEGWFGQTLAIRQRDKISPVI---------------------VFIKYNRALKRRYNLREIVNPISLKDIDDSNEWLIG

Query:  RMDDGFEEKDELLLERKNLS
        R+DD  EE+DEL+ +   L+
Subjt:  RMDDGFEEKDELLLERKNLS
A0A5D3BV42 BED-type domain-containing protein3.6e-2771.72Show/hide
Query:  MVDSLDIQDKILATAELSKYKRVEGWFGQTLAIRQRDKISPVIVFIKYNRALKRRYNLREIVNPISLKDIDDSNEWLIGRMDDGFEEKDELLLERKNLS
        MV SLDIQDKIL  AELSK+KR E  FGQ LAIRQR+KISP  VFIKYNRA+KRRYN+R+IV+PISL+DIDDSNE LIGR+DD  EE+DEL+ +   L+
Subjt:  MVDSLDIQDKILATAELSKYKRVEGWFGQTLAIRQRDKISPVIVFIKYNRALKRRYNLREIVNPISLKDIDDSNEWLIGRMDDGFEEKDELLLERKNLS
A0A5D3CWV6 Uncharacterized protein9.5e-2860.83Show/hide
Query:  MVDSLDIQDKILATAELSKYKRVEGWFGQTLAIRQRDKISPVI---------------------VFIKYNRALKRRYNLREIVNPISLKDIDDSNEWLIG
        MV SLD+Q+KIL  AELSKYKR E  FGQ LAIRQRDKISP++                     +FIKYNRALKRRYNLR+IV+PISL+DIDDSNEWLIG
Subjt:  MVDSLDIQDKILATAELSKYKRVEGWFGQTLAIRQRDKISPVI---------------------VFIKYNRALKRRYNLREIVNPISLKDIDDSNEWLIG

Query:  RMDDGFEEKDELLLERKNLS
        R+DD  EE+DEL+ +   L+
Subjt:  RMDDGFEEKDELLLERKNLS
A0A5D3DBP7 BED-type domain-containing protein4.6e-3075.76Show/hide
Query:  MVDSLDIQDKILATAELSKYKRVEGWFGQTLAIRQRDKISPVIVFIKYNRALKRRYNLREIVNPISLKDIDDSNEWLIGRMDDGFEEKDELLLERKNLS
        MV SLDIQDKIL  AELSKYKR E  FGQ LAIRQRDKI P  VFIKYNRALKRRYNLR+IV+PISL+DIDDSNEWLIGR+DD FEE+ EL+ +   L+
Subjt:  MVDSLDIQDKILATAELSKYKRVEGWFGQTLAIRQRDKISPVIVFIKYNRALKRRYNLREIVNPISLKDIDDSNEWLIGRMDDGFEEKDELLLERKNLS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G33406.1 hAT dimerisation domain-containing protein / transposase-related4.7e-1128.85Show/hide
Query:  MVDSLDIQDKILATAELSKYKRVEGWFGQTLAIRQRDKISPV-------------------------------------------------------IVF
        +V  ++ QDKI+   EL  +K+  G FG  +AIR R K+SP                                                        ++F
Subjt:  MVDSLDIQDKILATAELSKYKRVEGWFGQTLAIRQRDKISPV-------------------------------------------------------IVF

Query:  IKYNRALKRRYNLREIVNPISLKDIDDSNEWLIGRMDDGFE--EKDELLLERKNLS
        +KYNRAL+RRY   +  +PI L +ID  NEWL GRM++     E D+L+ E  +L+
Subjt:  IKYNRALKRRYNLREIVNPISLKDIDDSNEWLIGRMDDGFE--EKDELLLERKNLS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGATTCTTTGGACATACAAGACAAGATACTTGCAACAGCAGAACTAAGCAAGTACAAGAGAGTTGAAGGATGGTTTGGACAAACTTTAGCAATCAGACAAAGGGA
CAAAATATCTCCAGTCATAGTGTTCATCAAATACAATAGAGCATTAAAACGTCGGTACAACCTACGGGAAATCGTCAACCCCATCTCTTTAAAAGATATTGATGATAGTA
ATGAGTGGTTGATTGGAAGAATGGATGATGGTTTTGAGGAGAAGGATGAGCTTCTGCTGGAGCGAAAAAACCTATCTACTATTCTAGAGCTAGTACCTCAAGAGCTAAGA
CTAACGTTTCATGTCCATCCTCGTCCTCCACACAACCCACCCCCACATGAGTAA
mRNA sequenceShow/hide mRNA sequence
TTTTTTTTTTTTTTTCCTGCCAAGGTCAACAATGTTACATGTGCATTCATCATTGTTCTATTATATTTCATATTCTTTATTGTCTAACTTCTACAGCCACCATTCATTAT
TGCTGCAGAGATCATATTCTGACTTCTTAAATTGGGTATTTATTACCTCTTGATACACACCATACATACACATGAAGAGAACTATTATTTTTTTTAGGTTCAATTTAAAA
TTTATGTAGACAATTGTTCATGGCCTATAACGTTAGAGGGAAAACCTCTTGATTTCTCAAACAGTTCTATAATTGAAAAGAGATTAAAAAAACTGTAAATAAATCTGGGA
AAAAAAATAAAAATAAAAGTTTCAAGATCTGTAACCATTAACCACAGGCATTTATTAATTAAGAAACAATTCATTCCCACACATTACAACTCTTGAACCAAGAGGGCAAA
GAGCAGAAACATCAAAAGCATAAAGACAAAGCTGAAAAGAAATATCTTAATATCTATCTTCTTCCACATGTATCCAGATTATGCAACAATCGTGTCTTCATGAAGATGCA
AATTTGACATTTCTGGAGGTTATTGCCTTAAAAGGAAAAGCACTACTGGAGCTACCTTTTTGATTAATTTAGAGATAAAGAAACAGTACAGTTTTTAAAAGAGATATATA
GGGTTTTTTTGTTGCTGTTGGAAGATTGTGCAGCATATATTTTAAAAGGCGCTGTCGGGTGCACGCCTAAGGGCAAGGCGAATATGTATCGCCTCGCCTCGAATAGGCGA
GGTGCAATAAAGAAGGTGCGACTAAGGTGCGCACTTCCCATGAAGCACACAGGCGCGAAGCCCATGCCTTTCGTTTAGAAGAAGGCACCCTCAAAACGTAAGATTTATTG
CGTTTTAGGGTTATTATTAGGAAAAACAATATATTGTATTTTTCAAACCTAGTTATTGCCTATTGGTTACTTAAACATAAAGAAAAGAAGGTGACTGAAGTTCTCTTCGT
CTTCCATTTGGCTTCACGCCTGCTGTGCTGCCTCTTCGTCTTCTTCTTCTTGAAAAAACCAGACCGAAAGAAGACCACACAGCCACGACAGACGCCACACCTTTCTTCTT
CTTCCAATTTTTTTATTCTCCTTCTTCTAAAACTCCAATTCTCGACCAACCAGTGCTCTATTTCTTGAAGAAAAAACAGAGAACAACCAGTGCCCCAAGGTAACAAATCG
TTATTTTAAGTTTTTAACTCTTCTTTGACCTAACAACCAGTGCTCTTTTTCTAATTCTTGAAGAAAAAATCAGTTTCAAATTCCATCTTCCTCACCAATCTCCAATCATC
CTAGCACAAAAGAAAAGGAAAAAGAAAAAGAAAGAAAAAACCAGACCGGAAAAACAGAGCAGAATCATTCACAATCTCTGTTTTTTTGACAAAAACAAAGCAGAATCATT
CTTCAACCAGTACTATCATATCATCCAACAGCAAATTCTAGTAAGACCGACCGTAAAAGCTTCTTATTTGGTCTTTTTTTCTTTATTTTTTTCTCAATTCACATGTCAAT
TCACATACCTCTTTTCAATGTTTTGGAATAGTTGATAACGTGATAGCTTCAAAAGTGTTGGTGCCATTTTTTATTCAAAAAAAACAGAAAAATCATTAAAACCAGCAGGT
GCTGTCCATATTTGGCCACCAACTCTCCGGTAACTTTCCCACCATTCCATTCCAAATCTCTTTAGTTAATCATAGATTCTTAATCCTCAACTTCTTATTTCATTAGTTTA
CGACTCTACATTTAACATAGATGGCTGAGGATACTTTAAGAAAAGATCCGGCATGGAAATATGCTCGATTGCAAAATGACCAAGATATAAATACATTTATGTGTGGGTTT
TGTTTAAAAGTAACCTACGTGCAACAGCCTGTAGAAAATGTCCAGATCACATGAAGGAAGAAATTAATGAGTATATATCCAAGAAAAAGGAGATTAAAGAACAAAGAAAT
TTGATTGTGGACATTGATGCAGAAGATTATGGTATCAAGGCCATGATGAAGATGAGGTGAGTGTAAGCAATTTGAATAAAAGAGCAGCACCATGTTGTCCAAGTTCACAG
AAGCCAAGACAAAAAGGTCCAATGGATGCATATTTTACACCGAACCCAAAAAAATGTAGTTCAAAATAGAAAGAATGACAAAGGAAAGGGAAAACAAACTACAGTGAATG
CGGCATACAAAAAGGAAATGAGGGAGCACACCATCCAAAGAATTGCTTGATGGTTTTATGATGCCAAAATACCTCTCAATGCATGCAATTAAGAAAATTGGCAATTCAAC
CTTGGATTGAAACCATCGTCTTATCATGAATCAAGACTATCTTGTTTAAAAAAGGAGTTAGAAGCCACTCATGAGCTCATGAGGAGTCATAAGGCGGAGTGGGTAAAGGT
TGGATGCACTATACGACCGATGGATGGACGGATAGAGAAATAGGACATTAATTAACTTTTTAGTTAAAAGTCCAAAAGGCACCATGTTTATTGAATCCATTGATGCCTCA
TCTTATGCAAAGGACAGGAAGAAGATGTTTGAATTGTTCAATAGTTTTGTAAAGTGAATTGGAGAAGCTAATATTGTGCAAGTAGTTGCTAATAATGCTTCTGCAAATGT
GCTGGCTAGGAAGAATGCCAAGTATTTTGTTACTTCTTTTGAAATTAGCTATTGGTCCTTGTTAAGAGGCTAATATGTTCAAATTTTACTTTATTAATAGGGAGATCATT
AGAAGCAAAACGATCCCAATTAGTTTGGTCGCCTTGTGCCGCCCATTGCATAGACTAGACTTGATGTTGGAGGATGTATACAAGATCCCCAATATTCACAAAGCATTGAA
AAGAGGCATGGAGATCAGTAATTTTGTTTATGTTCATCTGCAATTGTTAAATATGATGAGACGATTTACTAATAAAAAAGAGTTGATCATATTTTGCAACTACTTGCATC
ACATTATCAAGTATACATCGTCAAAAGAACAACTCAAGGAAGATGTTTACTTCTGATGAATGGAAGAATAGCAAATGAAGCAAGGAGCAACAAGACAAGCGAGTAGTTCA
AACTATTTTGTTGGCTAGTGTTTGGACTATAATTGTTTTTGCTCTTAAAGTATCAAGCCCACTGGTGCGAGTACTTAGATTGGTGGATGGTGAGAAGAAGTCTCCTATGA
GATATATTTATGAGGCCATGGACAGAGCTAAGGAAGCTATTGCTAAATCCTTTAATGATAGGGAAGAAAAATACGAAGACATTTTTACAATCATTGATAGAAGATGGGAA
CTTTAGTTGCATCGTCTTTTGTATGTAGCGGGACATTATTTAAATCCAGGATTCTATTATTCAAATCCAAACATTTAGGAAAATGATGAAATAGTTAGTGGGTTGTACTC
ATTTATAACAAAAATGGTTGATTCTTTGGACATACAAGACAAGATACTTGCAACAGCAGAACTAAGCAAGTACAAGAGAGTTGAAGGATGGTTTGGACAAACTTTAGCAA
TCAGACAAAGGGACAAAATATCTCCAGTCATAGTGTTCATCAAATACAATAGAGCATTAAAACGTCGGTACAACCTACGGGAAATCGTCAACCCCATCTCTTTAAAAGAT
ATTGATGATAGTAATGAGTGGTTGATTGGAAGAATGGATGATGGTTTTGAGGAGAAGGATGAGCTTCTGCTGGAGCGAAAAAACCTATCTACTATTCTAGAGCTAGTACC
TCAAGAGCTAAGACTAACGTTTCATGTCCATCCTCGTCCTCCACACAACCCACCCCCACATGAGTAA
Protein sequenceShow/hide protein sequence
MVDSLDIQDKILATAELSKYKRVEGWFGQTLAIRQRDKISPVIVFIKYNRALKRRYNLREIVNPISLKDIDDSNEWLIGRMDDGFEEKDELLLERKNLSTILELVPQELR
LTFHVHPRPPHNPPPHE