; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG11G007460 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG11G007460
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionDNA-directed RNA polymerase family protein
Genome locationCG_Chr11:9667553..9670764
RNA-Seq ExpressionClCG11G007460
SyntenyClCG11G007460
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR001514 - DNA-directed RNA polymerase, 30-40kDa subunit, conserved site
IPR011262 - DNA-directed RNA polymerase, insert domain
IPR011263 - DNA-directed RNA polymerase, RpoA/D/Rpb3-type
IPR036603 - RNA polymerase, RBP11-like subunit
IPR036643 - DNA-directed RNA polymerase, insert domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138895.1 DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus]2.6e-16175.6Show/hide
Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED
        FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAA+GEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+IHINED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED

Query:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM
        LMETLTLEEKRTWVESCPTRVFELD VTHQ                                                                      
Subjt:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM

Query:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
                                    VMVVDPEAYTYDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
Subjt:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD

Query:  TVEADDQFGELGAHMRGG
        TVEADDQFGELGAHMRGG
Subjt:  TVEADDQFGELGAHMRGG

XP_008441761.1 PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucumis melo]4.5e-16175.36Show/hide
Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED
        FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAA+GEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+IHINED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED

Query:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM
        LMETLTLEEK TWVESCPTRVFELDPVTHQ                                                                      
Subjt:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM

Query:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
                                    VMVV+PEAYTYDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
Subjt:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD

Query:  TVEADDQFGELGAHMRGG
        TVEADDQFGELGAHMRGG
Subjt:  TVEADDQFGELGAHMRGG

XP_022147788.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Momordica charantia]7.1e-15974.4Show/hide
Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        MEG+SYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED
        FCSVEFHLRAKCHSDQTLDVTSKDL SSDHTVVPVDF+DSAAASGE LDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+IHINED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED

Query:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM
        LMETLTLEE++TWVESCPTRVFE+DP THQVV                                                                    
Subjt:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM

Query:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
                                      VVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
Subjt:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD

Query:  TVEADDQFGELGAHMRGG
        TVEADDQFGELGAHMRGG
Subjt:  TVEADDQFGELGAHMRGG

XP_022927752.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita moschata]1.0e-15773.92Show/hide
Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        MEG+SYQRFPKVKIRELRDDYAKFEL DTD SMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED
        FCSVEFHLRAKCHSDQTLDV+SKDLYSSDHTVVPVDFSDSAAA+GEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+IHINED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED

Query:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM
        LMETLTLEEK +WVES PT+VFELDPVTHQ                                                                      
Subjt:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM

Query:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
                                    V+VVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
Subjt:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD

Query:  TVEADDQFGELGAHMRGG
        TVEADDQFGELGAHMRGG
Subjt:  TVEADDQFGELGAHMRGG

XP_038891253.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Benincasa hispida]1.2e-15874.4Show/hide
Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED
        FCSVEFHLRAKCH+DQTLDVTSKDLYSSDHTVVPVDFSDSAAA+GEALD+KGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+IHINED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED

Query:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM
        LM+TLT EEKRTWVESCPTRVFE D VTHQV                                                                     
Subjt:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM

Query:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
                                      VVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
Subjt:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD

Query:  TVEADDQFGELGAHMRGG
        TVEADDQFGELGAHMRGG
Subjt:  TVEADDQFGELGAHMRGG

TrEMBL top hitse value%identityAlignment
A0A0A0LHS1 RPOLD domain-containing protein1.3e-16175.6Show/hide
Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED
        FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAA+GEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+IHINED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED

Query:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM
        LMETLTLEEKRTWVESCPTRVFELD VTHQ                                                                      
Subjt:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM

Query:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
                                    VMVVDPEAYTYDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
Subjt:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD

Query:  TVEADDQFGELGAHMRGG
        TVEADDQFGELGAHMRGG
Subjt:  TVEADDQFGELGAHMRGG

A0A1S3B3P9 LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like2.2e-16175.36Show/hide
Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED
        FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAA+GEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+IHINED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED

Query:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM
        LMETLTLEEK TWVESCPTRVFELDPVTHQ                                                                      
Subjt:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM

Query:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
                                    VMVV+PEAYTYDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
Subjt:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD

Query:  TVEADDQFGELGAHMRGG
        TVEADDQFGELGAHMRGG
Subjt:  TVEADDQFGELGAHMRGG

A0A6J1D221 DNA-directed RNA polymerases II, IV and V subunit 3-like3.5e-15974.4Show/hide
Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        MEG+SYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED
        FCSVEFHLRAKCHSDQTLDVTSKDL SSDHTVVPVDF+DSAAASGE LDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+IHINED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED

Query:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM
        LMETLTLEE++TWVESCPTRVFE+DP THQVV                                                                    
Subjt:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM

Query:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
                                      VVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
Subjt:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD

Query:  TVEADDQFGELGAHMRGG
        TVEADDQFGELGAHMRGG
Subjt:  TVEADDQFGELGAHMRGG

A0A6J1ELW4 DNA-directed RNA polymerases II, IV and V subunit 3-like5.0e-15873.92Show/hide
Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        MEG+SYQRFPKVKIRELRDDYAKFEL DTD SMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED
        FCSVEFHLRAKCHSDQTLDV+SKDLYSSDHTVVPVDFSDSAAA+GEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+IHINED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED

Query:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM
        LMETLTLEEK +WVES PT+VFELDPVTHQ                                                                      
Subjt:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM

Query:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
                                    V+VVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
Subjt:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD

Query:  TVEADDQFGELGAHMRGG
        TVEADDQFGELGAHMRGG
Subjt:  TVEADDQFGELGAHMRGG

A0A6J1JIE7 DNA-directed RNA polymerases II, IV and V subunit 3-like5.0e-15873.92Show/hide
Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        MEG+SYQRFPKVKIRELRDDYAKFEL DTD SMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED
        FCSVEFHLRAKCHSDQTLDV+SKDLYSSDHTVVPVDFSDSAAA+GEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+IHINED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED

Query:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM
        LMETLTLEEK +WVES PT+VFELDPVTHQ                                                                      
Subjt:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM

Query:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
                                    V+VVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
Subjt:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD

Query:  TVEADDQFGELGAHMRGG
        TVEADDQFGELGAHMRGG
Subjt:  TVEADDQFGELGAHMRGG

SwissProt top hitse value%identityAlignment
P97760 DNA-directed RNA polymerase II subunit RPB35.0e-4652.11Show/hide
Query:  YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSV
        Y   P V+I EL ++  KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DEFIAHRLGLIPLTS+  +  +++SRDC     +  C  CSV
Subjt:  YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSV

Query:  EFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPN
        EF L  +C+ DQT  VTS+DL S+   V+PV   +      + ++   I+IVKLR+GQELRLRA A+KG GK+HAKW+P A V F Y+P+
Subjt:  EFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPN

Q39211 DNA-directed RNA polymerases II, IV and V subunit 32.6e-13563.16Show/hide
Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        M+G++YQRFPK+KIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED
        FCSVEF L +KC +DQTLDVTS+DLYS+D TV PVDF+  ++ S ++ + KGIIIVKLRRGQEL+LRAIARKGIGKDHAKWSPAATVTFMYEP+I INED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED

Query:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM
        +M+TL+ EEK   +ES PT+VF +DPVT QVV                                                                    
Subjt:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM

Query:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
                                      VVDPEAYTYD+EVIKKAEAMGK GL++I+ K+DSFIFTVESTGA+KASQL+LNAID+LKQKLDAVRLSDD
Subjt:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD

Query:  TVEADDQFGELGAHMRGG
        TVEADDQFGELGAHMRGG
Subjt:  TVEADDQFGELGAHMRGG

Q39212 DNA-directed RNA polymerases IV and V subunit 3B1.7e-12359.09Show/hide
Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSSVLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED
        FCSVEF L AKC +DQTLDVTS+DLYS+D TV PVDF+ +++ S ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAKWSPAATVT+MYEP+I INE+
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED

Query:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM
        +M TLT EEK   +ES PT+VF +DPVT QVV                                                                    
Subjt:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM

Query:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
                                      VVDPEAYTYD+EVIKKAEAMGK GL++I  K DSF+FTVESTGA+KASQL+LNAIDILKQKLDA+RLSD+
Subjt:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD

Query:  TVEADDQFGELGAHMRGG
        TVEADDQFGELGAHMR G
Subjt:  TVEADDQFGELGAHMRGG

Q3T0Q3 DNA-directed RNA polymerase II subunit RPB31.7e-4652.63Show/hide
Query:  YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSV
        Y   P V+I EL D+  KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DEFIAHRLGLIPLTS+  +  +++SRDC     +  C  CSV
Subjt:  YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSV

Query:  EFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPN
        EF L  +C+ DQT  VTS+DL S+   V+PV   +      + ++   I+IVKLR+GQELRLRA A+KG GK+HAKW+P A V F Y+P+
Subjt:  EFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPN

Q54DH7 DNA-directed RNA polymerase II subunit rpb31.0e-5938.17Show/hide
Query:  SSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCS
        S   R P+++I E+++D   F L +TD S+ANALRRVMIAEVPT+ IDLVE E N+SVL DEFIAHRLGLIPL S+      ++RDC   D   +C+ CS
Subjt:  SSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCS

Query:  VEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLME
        VE  L  KC  ++  DVTS DL S +  V+PV    +++ S +      I IVKLRRGQE++LRAIA+KG+GK+HAKWSP+   T+ ++P I +N++ ++
Subjt:  VEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLME

Query:  TLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVMVLL
         LT ++K  WV SCPT+V+   P  HQ  STQQ                                                                   
Subjt:  TLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVMVLL

Query:  RCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVR
                                 V + DP    Y  E  KKAE+ GK  LV +  K+D FIFTVES+GA+K   ++L AI I+K+KL  ++
Subjt:  RCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVR

Arabidopsis top hitse value%identityAlignment
AT1G60850.1 DNA-directed RNA polymerase family protein2.1e-2333.06Show/hide
Query:  GSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFC
        G+ Y  F KV +  L     +F++   DA+ ANA RR++IAEVP++AI+ V I  N+SV+ DE +AHR+GLIP+ ++  +    S      + D   E  
Subjt:  GSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFC

Query:  SVEFHLRAKCHSDQ-TLDVTSKDL-----------YSSDHTVVPVDFSDSAAASGEALD----------TKGIIIVKLRRGQELRLRAIARKGIGKDHAK
        ++ F L  KC  ++  L V + DL            S + T  P  ++ S + S ++L              I+I KL  GQE+ L A A KGIGK HAK
Subjt:  SVEFHLRAKCHSDQ-TLDVTSKDL-----------YSSDHTVVPVDFSDSAAASGEALD----------TKGIIIVKLRRGQELRLRAIARKGIGKDHAK

Query:  WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELD
        WSP  T  +   P + +  ++ + L        V  CP  VF+++
Subjt:  WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELD

AT1G60850.2 DNA-directed RNA polymerase family protein2.1e-2333.06Show/hide
Query:  GSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFC
        G+ Y  F KV +  L     +F++   DA+ ANA RR++IAEVP++AI+ V I  N+SV+ DE +AHR+GLIP+ ++  +    S      + D   E  
Subjt:  GSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFC

Query:  SVEFHLRAKCHSDQ-TLDVTSKDL-----------YSSDHTVVPVDFSDSAAASGEALD----------TKGIIIVKLRRGQELRLRAIARKGIGKDHAK
        ++ F L  KC  ++  L V + DL            S + T  P  ++ S + S ++L              I+I KL  GQE+ L A A KGIGK HAK
Subjt:  SVEFHLRAKCHSDQ-TLDVTSKDL-----------YSSDHTVVPVDFSDSAAASGEALD----------TKGIIIVKLRRGQELRLRAIARKGIGKDHAK

Query:  WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELD
        WSP  T  +   P + +  ++ + L        V  CP  VF+++
Subjt:  WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELD

AT2G15400.1 DNA-directed RNA polymerase family protein1.2e-12459.09Show/hide
Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSSVLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED
        FCSVEF L AKC +DQTLDVTS+DLYS+D TV PVDF+ +++ S ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAKWSPAATVT+MYEP+I INE+
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED

Query:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM
        +M TLT EEK   +ES PT+VF +DPVT QVV                                                                    
Subjt:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM

Query:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
                                      VVDPEAYTYD+EVIKKAEAMGK GL++I  K DSF+FTVESTGA+KASQL+LNAIDILKQKLDA+RLSD+
Subjt:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD

Query:  TVEADDQFGELGAHMRGG
        TVEADDQFGELGAHMR G
Subjt:  TVEADDQFGELGAHMRGG

AT2G15400.2 DNA-directed RNA polymerase family protein9.5e-9374.03Show/hide
Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSSVLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED
        FCSVEF L AKC +DQTLDVTS+DLYS+D TV PVDF+ +++ S ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAKWSPAATVT+MYEP+I INE+
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED

Query:  LMETLTLEEKRTWVESCPTRVFELDPVTHQV
        +M TLT EEK   +ES PT+VF +DPVT QV
Subjt:  LMETLTLEEKRTWVESCPTRVFELDPVTHQV

AT2G15430.1 DNA-directed RNA polymerase family protein1.8e-13663.16Show/hide
Query:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
        M+G++YQRFPK+KIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE
Subjt:  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE

Query:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED
        FCSVEF L +KC +DQTLDVTS+DLYS+D TV PVDF+  ++ S ++ + KGIIIVKLRRGQEL+LRAIARKGIGKDHAKWSPAATVTFMYEP+I INED
Subjt:  FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINED

Query:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM
        +M+TL+ EEK   +ES PT+VF +DPVT QVV                                                                    
Subjt:  LMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVM

Query:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD
                                      VVDPEAYTYD+EVIKKAEAMGK GL++I+ K+DSFIFTVESTGA+KASQL+LNAID+LKQKLDAVRLSDD
Subjt:  VLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDD

Query:  TVEADDQFGELGAHMRGG
        TVEADDQFGELGAHMRGG
Subjt:  TVEADDQFGELGAHMRGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGGAGTTCGTACCAGCGGTTTCCAAAGGTGAAAATCCGGGAACTCCGAGATGATTACGCCAAATTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCT
CCGTCGCGTCATGATCGCCGAGGTGCCCACCATCGCCATTGACCTGGTAGAAATTGAAGTGAACTCTTCTGTTCTCAACGACGAGTTCATCGCTCATCGCCTTGGTCTCA
TTCCTCTCACCAGCGAGCGTGCCATGTCCATGCGCTTCTCTCGCGACTGTGATGCTTGCGATGGTGATGGCCAGTGCGAGTTTTGCTCTGTTGAGTTTCACCTTCGTGCC
AAGTGCCACTCCGACCAAACCCTAGACGTCACCAGCAAGGATCTCTATAGTTCTGATCACACTGTTGTCCCCGTTGATTTCTCTGATTCTGCTGCAGCTAGTGGTGAAGC
GTTGGATACCAAAGGAATAATCATTGTGAAGCTACGTCGTGGTCAAGAGTTGCGGCTGAGAGCCATAGCTAGGAAGGGCATTGGTAAAGATCATGCAAAATGGTCGCCTG
CAGCAACCGTGACATTCATGTATGAGCCAAACATTCACATCAATGAAGACCTAATGGAAACATTAACCCTAGAGGAAAAGAGAACTTGGGTTGAAAGTTGCCCAACCAGA
GTATTTGAATTGGATCCTGTTACTCATCAGGTTGTTTCGACTCAGCAAATGAGATATTTAAAGAGAAGGTGTCTTGAGATGATTTTGAGGAGTCTAATAAGGAGCCTATG
CTATTGGATAGGCTTTAAGCCTAAGTCTTCTCCAAATCTTCAAGCATCTTCTTCGAGAAGTGCTCTTATTTTCTTAAAGTTCGTGAATTTGAAGTGTGAGATTCGTACAA
GAGCCGCTTGTCAAGTTATGGTACTCTTAAGGTGTTTAAGTGCTCTTATTTCATTTGTTTATGTTCTTGGTGGCTCCAATTCAGACATGTCTTCCTTCCTTGTGGTTATG
GTGGTTGATCCTGAGGCATACACTTATGATGATGAGGTGATTAAGAAAGCAGAAGCTATGGGTAAAGCTGGACTAGTGGATATTACTGCAAAAGAAGATAGTTTTATCTT
CACAGTTGAATCTACCGGTGCAATCAAAGCTTCCCAGTTGATACTCAATGCCATAGATATCCTGAAACAGAAGCTGGATGCAGTCCGTCTTTCAGACGATACTGTAGAAG
CAGATGATCAGTTTGGTGAGTTAGGTGCACATATGCGAGGTGGATGA
mRNA sequenceShow/hide mRNA sequence
AAAAAAAAAAAGGGGTGGAGGTGACTGTCTCGTCGATAAACCCTCGAAAGAGAGTGAGCTAGAACGACAGAGGTGGGAGACATGGAAGGGAGTTCGTACCAGCGGTTTCC
AAAGGTGAAAATCCGGGAACTCCGAGATGATTACGCCAAATTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGTCGCGTCATGATCGCCGAGGTGCCCA
CCATCGCCATTGACCTGGTAGAAATTGAAGTGAACTCTTCTGTTCTCAACGACGAGTTCATCGCTCATCGCCTTGGTCTCATTCCTCTCACCAGCGAGCGTGCCATGTCC
ATGCGCTTCTCTCGCGACTGTGATGCTTGCGATGGTGATGGCCAGTGCGAGTTTTGCTCTGTTGAGTTTCACCTTCGTGCCAAGTGCCACTCCGACCAAACCCTAGACGT
CACCAGCAAGGATCTCTATAGTTCTGATCACACTGTTGTCCCCGTTGATTTCTCTGATTCTGCTGCAGCTAGTGGTGAAGCGTTGGATACCAAAGGAATAATCATTGTGA
AGCTACGTCGTGGTCAAGAGTTGCGGCTGAGAGCCATAGCTAGGAAGGGCATTGGTAAAGATCATGCAAAATGGTCGCCTGCAGCAACCGTGACATTCATGTATGAGCCA
AACATTCACATCAATGAAGACCTAATGGAAACATTAACCCTAGAGGAAAAGAGAACTTGGGTTGAAAGTTGCCCAACCAGAGTATTTGAATTGGATCCTGTTACTCATCA
GGTTGTTTCGACTCAGCAAATGAGATATTTAAAGAGAAGGTGTCTTGAGATGATTTTGAGGAGTCTAATAAGGAGCCTATGCTATTGGATAGGCTTTAAGCCTAAGTCTT
CTCCAAATCTTCAAGCATCTTCTTCGAGAAGTGCTCTTATTTTCTTAAAGTTCGTGAATTTGAAGTGTGAGATTCGTACAAGAGCCGCTTGTCAAGTTATGGTACTCTTA
AGGTGTTTAAGTGCTCTTATTTCATTTGTTTATGTTCTTGGTGGCTCCAATTCAGACATGTCTTCCTTCCTTGTGGTTATGGTGGTTGATCCTGAGGCATACACTTATGA
TGATGAGGTGATTAAGAAAGCAGAAGCTATGGGTAAAGCTGGACTAGTGGATATTACTGCAAAAGAAGATAGTTTTATCTTCACAGTTGAATCTACCGGTGCAATCAAAG
CTTCCCAGTTGATACTCAATGCCATAGATATCCTGAAACAGAAGCTGGATGCAGTCCGTCTTTCAGACGATACTGTAGAAGCAGATGATCAGTTTGGTGAGTTAGGTGCA
CATATGCGAGGTGGATGATCCAAATACCAGCCTTACCCATATGTTTGTAGGAGGTGAGACTAACTTGAATTTTGTTTTCTGGACAATCTGGTTTTTTGTATGAATGAACT
TGGTTTAGTGCAGTCTTTTTCACATATTTGATGCATTCCCCTAGCTTCTGGAAATGATTAAAATGTAGTATCTTTGGCATTATCTGACACGGATTCGTGGATTATAAATG
ATAGTTAATTCAGCTTCTACTATCTTCAGGCAATGCTTTGATTATTAATTTTTCCAGGGCTGCTTCCTGGTGCAGTTTTTGCTGTCTTTTAAGCGATATGGTGACTTGCC
CCAAGGGTTGATATTGGAACAAGACGTCACCCATGGTGAAAAAACTATTTGTTGTTGGGTATCTTTAGGGGTAGAAGATTGACATCAAACATTTGCATTGAAGTTTGGAT
AATTGTTTTAATGCATATTTAGGATT
Protein sequenceShow/hide protein sequence
MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRA
KCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTR
VFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLKFVNLKCEIRTRAACQVMVLLRCLSALISFVYVLGGSNSDMSSFLVVM
VVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG