; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG11G007540 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG11G007540
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionNon-LTR retroelement reverse transcriptase-like protein
Genome locationCG_Chr11:9960333..9981893
RNA-Seq ExpressionClCG11G007540
SyntenyClCG11G007540
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046851.1 uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]1.6e-0440.96Show/hide
Query:  LSTLLQFVSWVRACITSPKSS------------------QG---SPFLFVIVMEVLPRLFNRPSEGLRFDHRQRSSKLIDFEF
        + T L+FVSW+RAC+TS   S                  QG   SPFLFV+VMEVL R+ N+  +  RF HR    KL    F
Subjt:  LSTLLQFVSWVRACITSPKSS------------------QG---SPFLFVIVMEVLPRLFNRPSEGLRFDHRQRSSKLIDFEF

KAA0049769.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]1.6e-0439.76Show/hide
Query:  LSTLLQFVSWVRACITSPKSS------------------QG---SPFLFVIVMEVLPRLFNRPSEGLRFDHRQRSSKLIDFEF
        + T L+FVSW+R C+TSP  S                  QG   SPFLFV+VMEVL R+ N+  +  +F HR    KL    F
Subjt:  LSTLLQFVSWVRACITSPKSS------------------QG---SPFLFVIVMEVLPRLFNRPSEGLRFDHRQRSSKLIDFEF

KAA0062318.1 uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa]2.0e-0439.76Show/hide
Query:  LSTLLQFVSWVRACITSPKSS------------------QGSP---FLFVIVMEVLPRLFNRPSEGLRFDHRQRSSKLIDFEF
        + T L+FVSW+RAC+TSP  S                  QG P   FLFV+VMEVL R+ N+  +   F HR    KL    F
Subjt:  LSTLLQFVSWVRACITSPKSS------------------QGSP---FLFVIVMEVLPRLFNRPSEGLRFDHRQRSSKLIDFEF

TYK12108.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]1.6e-0439.76Show/hide
Query:  LSTLLQFVSWVRACITSPKSS------------------QG---SPFLFVIVMEVLPRLFNRPSEGLRFDHRQRSSKLIDFEF
        + T L+FVSW+R C+TSP  S                  QG   SPFLFV+VMEVL R+ N+  +  +F HR    KL    F
Subjt:  LSTLLQFVSWVRACITSPKSS------------------QG---SPFLFVIVMEVLPRLFNRPSEGLRFDHRQRSSKLIDFEF

XP_031745730.1 uncharacterized protein LOC116406187 [Cucumis sativus]2.0e-0439.13Show/hide
Query:  MDVHLASEAVRTTEKFCLAPYWPLSTLLQFVSWVRACITSPKSS------------------QG---SPFLFVIVMEVLPRLFNRPSEGLRF
        +D+H A ++V     F       + T L+FVSWVRAC+TSP  S                  QG   SPFLFV+VMEVL R+ N P +  +F
Subjt:  MDVHLASEAVRTTEKFCLAPYWPLSTLLQFVSWVRACITSPKSS------------------QG---SPFLFVIVMEVLPRLFNRPSEGLRF

TrEMBL top hitse value%identityAlignment
A0A5A7TKU4 Non-LTR retroelement reverse transcriptase-like protein8.4e-0437.35Show/hide
Query:  LSTLLQFVSWVRACITSPKSS------------------QG---SPFLFVIVMEVLPRLFNRPSEGLRFDHRQRSSKLIDFEF
        +ST L+FVSW++AC+TSP  S                  QG   SPF FV+VM+V  R+ N+P +G +F       KL    F
Subjt:  LSTLLQFVSWVRACITSPKSS------------------QG---SPFLFVIVMEVLPRLFNRPSEGLRFDHRQRSSKLIDFEF

A0A5A7TZS0 Reverse transcriptase domain-containing protein7.6e-0540.96Show/hide
Query:  LSTLLQFVSWVRACITSPKSS------------------QG---SPFLFVIVMEVLPRLFNRPSEGLRFDHRQRSSKLIDFEF
        + T L+FVSW+RAC+TS   S                  QG   SPFLFV+VMEVL R+ N+  +  RF HR    KL    F
Subjt:  LSTLLQFVSWVRACITSPKSS------------------QG---SPFLFVIVMEVLPRLFNRPSEGLRFDHRQRSSKLIDFEF

A0A5A7U8G1 Non-LTR retroelement reverse transcriptase-like protein7.6e-0539.76Show/hide
Query:  LSTLLQFVSWVRACITSPKSS------------------QG---SPFLFVIVMEVLPRLFNRPSEGLRFDHRQRSSKLIDFEF
        + T L+FVSW+R C+TSP  S                  QG   SPFLFV+VMEVL R+ N+  +  +F HR    KL    F
Subjt:  LSTLLQFVSWVRACITSPKSS------------------QG---SPFLFVIVMEVLPRLFNRPSEGLRFDHRQRSSKLIDFEF

A0A5A7V3Z0 Reverse transcriptase domain-containing protein9.9e-0539.76Show/hide
Query:  LSTLLQFVSWVRACITSPKSS------------------QGSP---FLFVIVMEVLPRLFNRPSEGLRFDHRQRSSKLIDFEF
        + T L+FVSW+RAC+TSP  S                  QG P   FLFV+VMEVL R+ N+  +   F HR    KL    F
Subjt:  LSTLLQFVSWVRACITSPKSS------------------QGSP---FLFVIVMEVLPRLFNRPSEGLRFDHRQRSSKLIDFEF

A0A5D3CLU1 Non-LTR retroelement reverse transcriptase-like protein7.6e-0539.76Show/hide
Query:  LSTLLQFVSWVRACITSPKSS------------------QG---SPFLFVIVMEVLPRLFNRPSEGLRFDHRQRSSKLIDFEF
        + T L+FVSW+R C+TSP  S                  QG   SPFLFV+VMEVL R+ N+  +  +F HR    KL    F
Subjt:  LSTLLQFVSWVRACITSPKSS------------------QG---SPFLFVIVMEVLPRLFNRPSEGLRFDHRQRSSKLIDFEF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTTCATCTTGCTAGTGAGGCGGTTAGGACTACTGAGAAATTTTGCTTGGCACCTTATTGGCCATTGAGTACCCTGCTTCAGTTTGTTAGTTGGGTTAGA
GCTTGTATTACATCCCCTAAGTCTTCTCAAGGCTCTCCATTTCTGTTTGTGATTGTTATGGAGGTCTTGCCGAGATTGTTTAATCGACCATCTGAGGGGCTTAGG
TTTGACCACAGACAAAGAAGTTCAAAATTAATTGATTTTGAATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGTTCATCTTGCTAGTGAGGCGGTTAGGACTACTGAGAAATTTTGCTTGGCACCTTATTGGCCATTGAGTACCCTGCTTCAGTTTGTTAGTTGGGTTAGA
GCTTGTATTACATCCCCTAAGTCTTCTCAAGGCTCTCCATTTCTGTTTGTGATTGTTATGGAGGTCTTGCCGAGATTGTTTAATCGACCATCTGAGGGGCTTAGG
TTTGACCACAGACAAAGAAGTTCAAAATTAATTGATTTTGAATTTTGA
Protein sequenceShow/hide protein sequence
MDVHLASEAVRTTEKFCLAPYWPLSTLLQFVSWVRACITSPKSSQGSPFLFVIVMEVLPRLFNRPSEGLRFDHRQRSSKLIDFEF