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ClCG11G007675 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG11G007675
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotransposon protein
Genome locationCG_Chr11:10406586..10414000
RNA-Seq ExpressionClCG11G007675
SyntenyClCG11G007675
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043158.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-1966.67Show/hide
Query:  MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEV
        M GP CSGFGWN E KCI  E E+FD WV+SHP+AK L +KSFPYYD+L  VFG+DRATG  A T A+V
Subjt:  MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEV

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]5.6e-2065.22Show/hide
Query:  MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEV
        M GP CSGFGWN E +CI  E ++FD+WVKSHP+ K L HKSFPYYDDL+ VFGKDRATG+ + T  +V
Subjt:  MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEV

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]1.6e-1947.96Show/hide
Query:  MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEVEFEPVMEVENEDILNNQSPDFENFYIPDP
        M+GP CSGFGWN  +KCI+ E  +FD WVK HP+A+ L +K FPY+ DL +VFG+DRATG    T  E+  +   + E +D+  N     E+F IP+P
Subjt:  MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEVEFEPVMEVENEDILNNQSPDFENFYIPDP

TYK10886.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-1947.96Show/hide
Query:  MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEVEFEPVMEVENEDILNNQSPDFENFYIPDP
        M+GP CS FGWN E+KCI+ +  +FD WVK HP+A+ L +KSFPY+ DL I+FG+DRATG    T  E+  +   + E +D+  N     E+F IP+P
Subjt:  MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEVEFEPVMEVENEDILNNQSPDFENFYIPDP

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]5.6e-2065.22Show/hide
Query:  MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEV
        M GP CSGFGWN E +CI  E ++FD+W+KSHP+AK L HKSFPYYDDL+ VFGKDRATG+ + T   V
Subjt:  MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEV

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859532.7e-2065.22Show/hide
Query:  MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEV
        M GP CSGFGWN E +CI  E ++FD+W+KSHP+AK L HKSFPYYDDL+ VFGKDRATG+ + T   V
Subjt:  MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEV

A0A5A7U0H7 Retrotransposon protein2.7e-2065.22Show/hide
Query:  MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEV
        M GP CSGFGWN E +CI  E ++FD+W+KSHP+AK L HKSFPYYDDL+ VFGKDRATG+ + T   V
Subjt:  MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEV

A0A5A7V6Q9 Retrotransposon protein7.8e-2066.67Show/hide
Query:  MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEV
        M GP CSGFGWN E KCI  E E+FD WV+SHP+AK L +KSFPYYD+L  VFG+DRATG  A T A+V
Subjt:  MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEV

A0A5D3CKC1 Retrotransposon protein7.8e-2047.96Show/hide
Query:  MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEVEFEPVMEVENEDILNNQSPDFENFYIPDP
        M+GP CS FGWN E+KCI+ +  +FD WVK HP+A+ L +KSFPY+ DL I+FG+DRATG    T  E+  +   + E +D+  N     E+F IP+P
Subjt:  MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEVEFEPVMEVENEDILNNQSPDFENFYIPDP

A0A5D3DG22 Retrotransposon protein2.7e-2065.22Show/hide
Query:  MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEV
        M GP CSGFGWN E +CI  E ++FD+WVKSHP+ K L HKSFPYYDDL+ VFGKDRATG+ + T  +V
Subjt:  MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G30140.1 unknown protein1.2e-0740.35Show/hide
Query:  SGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHA
        SGFGW+ E K      E++  ++K+HP+ K +  +S  +++DL I+FG   ATGS A
Subjt:  SGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHA

AT2G24960.1 unknown protein1.4e-0531.88Show/hide
Query:  GFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVF------GKDRATGSHATTTAEVE
        GF W+  R  I  +  ++D+++K HP A+    KS P Y+DL  +F      G D      A  T+E +
Subjt:  GFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVF------GKDRATGSHATTTAEVE

AT2G24960.2 unknown protein1.3e-0625.29Show/hide
Query:  SGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEVEFEPVMEVENEDILNNQSPDFENF
        +GF W+A R  +  + +I++ ++++HP A+    K+ P Y +L  +FGK+ + G +       +  P      E +  N+S   + F
Subjt:  SGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEVEFEPVMEVENEDILNNQSPDFENF

AT4G02210.1 unknown protein7.0e-0526.76Show/hide
Query:  GFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEVEFEPVMEVE
        GF W+ ER+ +  +  ++  ++K+H  A++   +  PYY DL ++ G D     +    A   F+P  E +
Subjt:  GFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEVEFEPVMEVE

AT5G27260.1 unknown protein5.2e-0830.68Show/hide
Query:  SGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEVEFEPVMEVENEDILNNQSPDFENFY
        SGFGW+   K      E++  ++K+HP+ K+L + +F ++D+L I+FG+  ATG +A    +   + +     E+       DF+N Y
Subjt:  SGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEVEFEPVMEVENEDILNNQSPDFENFY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGGCCCAGGCTGTAGTGGGTTTGGGTGGAATGCGGAGCGCAAATGTATTGATTGTGAGGCGGAGATATTTGACGCATGGGTCAAGAGTCATCCGAGTGCAAAAAG
ACTGTGCCATAAGTCATTTCCATACTATGATGACTTGGCCATCGTATTCGGAAAAGATAGAGCCACAGGGAGTCATGCAACCACCACTGCAGAGGTCGAATTTGAACCTG
TTATGGAAGTGGAGAACGAGGACATCCTAAACAACCAGTCCCCAGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTGCTAGTTATCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGGCCCAGGCTGTAGTGGGTTTGGGTGGAATGCGGAGCGCAAATGTATTGATTGTGAGGCGGAGATATTTGACGCATGGGTCAAGAGTCATCCGAGTGCAAAAAG
ACTGTGCCATAAGTCATTTCCATACTATGATGACTTGGCCATCGTATTCGGAAAAGATAGAGCCACAGGGAGTCATGCAACCACCACTGCAGAGGTCGAATTTGAACCTG
TTATGGAAGTGGAGAACGAGGACATCCTAAACAACCAGTCCCCAGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTGCTAGTTATCTTTAA
Protein sequenceShow/hide protein sequence
MLGPGCSGFGWNAERKCIDCEAEIFDAWVKSHPSAKRLCHKSFPYYDDLAIVFGKDRATGSHATTTAEVEFEPVMEVENEDILNNQSPDFENFYIPDPPFASYL