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ClCG11G007970 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG11G007970
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase
Genome locationCG_Chr11:10963431..10964925
RNA-Seq ExpressionClCG11G007970
SyntenyClCG11G007970
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155000.1 uncharacterized protein LOC111022144 [Momordica charantia]1.4e-1536.9Show/hide
Query:  YERKFIELSRFAADLVSTSERRIKRFIRGLCEEIRGAVTLKERTT-AASLKAALIMDKNTAKKPQATHSCWEAGASSRFKRKSPPALSDQTSKAHRPISG
        YERKF ELSRFA +L+  +  +IKRF++GL + IRG V L+   + A +++ ALIMDK+ + K     S  E G+SS  KRK  P  +D + +A +  + 
Subjt:  YERKFIELSRFAADLVSTSERRIKRFIRGLCEEIRGAVTLKERTT-AASLKAALIMDKNTAKKPQATHSCWEAGASSRFKRKSPPALSDQTSKAHRPISG

Query:  QATTLRLCGSCNKHH--------------------SRMCPIKGEANTDKSTPKALPT-ATQGGKQKAPVFALTKEKPEDTNTVVPAN
              +C +C K H                    +R CP+   ANT +   +  PT +TQG  Q+A VFALT+++  D  TVV  N
Subjt:  QATTLRLCGSCNKHH--------------------SRMCPIKGEANTDKSTPKALPT-ATQGGKQKAPVFALTKEKPEDTNTVVPAN

XP_022156326.1 uncharacterized protein LOC111023247 [Momordica charantia]2.3e-1536.17Show/hide
Query:  YERKFIELSRFAADLVSTSERRIKRFIRGLCEEIRGAVTLKERTT-AASLKAALIMDKNTAKKPQATHSCWEAGASSRFKRKSPPALSDQTSKAHRPISG
        YERKF ELSRFA +L+ T   +IKRF++GL + IRG V L+  TT A +++ AL+MDK+ + K        E G+SS  KRK P   +D   +A +  + 
Subjt:  YERKFIELSRFAADLVSTSERRIKRFIRGLCEEIRGAVTLKERTT-AASLKAALIMDKNTAKKPQATHSCWEAGASSRFKRKSPPALSDQTSKAHRPISG

Query:  QATTLRLCGSCNKHH--------------------SRMCPIKGEANTDKSTPK-ALPTATQGGKQKAPVFALTKEKPEDTNTVVPANI
              +C +C K H                    +R CP+   ANT +   +   P +TQG  Q+A VFALT+++  D  TVV   +
Subjt:  QATTLRLCGSCNKHH--------------------SRMCPIKGEANTDKSTPK-ALPTATQGGKQKAPVFALTKEKPEDTNTVVPANI

XP_022156328.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111023249 [Momordica charantia]4.0e-1537.63Show/hide
Query:  YERKFIELSRFAADLVSTSERRIKRFIRGLCEEIRGAVTLKERTT-AASLKAALIMDKNTAKKPQATHSCWEAGASSRFKRKSPPALSDQTSKAHRPISG
        YERKF ELSRF    V T + +I +FI GL  EI+G + LKE TT AA+++ AL+MDK   ++PQ+       G++S  KRK     + Q+S+ H+  + 
Subjt:  YERKFIELSRFAADLVSTSERRIKRFIRGLCEEIRGAVTLKERTT-AASLKAALIMDKNTAKKPQATHSCWEAGASSRFKRKSPPALSDQTSKAHRPISG

Query:  QATTLRLCGSCNKHHSRMCPIKGE-------------------ANT---DKSTPKALPTATQGGKQKAPVFALTKEKPEDTNTVVPANIELESL
        + T   +C SC K+H+R C +  +                   +NT    + TP A  TATQGG Q A VFALT+   E    VV   I + S+
Subjt:  QATTLRLCGSCNKHHSRMCPIKGE-------------------ANT---DKSTPKALPTATQGGKQKAPVFALTKEKPEDTNTVVPANIELESL

XP_022157413.1 uncharacterized protein LOC111024114 [Momordica charantia]5.2e-1537.2Show/hide
Query:  YERKFIELSRFAADLVSTSERRIKRFIRGLCEEIRGAVTLKERTT-AASLKAALIMDKNTAKKPQATHSCWEAGASSRFKRKSPPALSDQTSKAHRPISG
        YERKF ELSRF    + T + +I +FI GL  EI+G + +KE TT AA+++ AL+MDK   ++PQ+       G+SS  KRK     S Q+S+ H+    
Subjt:  YERKFIELSRFAADLVSTSERRIKRFIRGLCEEIRGAVTLKERTT-AASLKAALIMDKNTAKKPQATHSCWEAGASSRFKRKSPPALSDQTSKAHRPISG

Query:  QATTLRLCGSCNKHHSRMCPI-KGEANTDKSTPKALPTATQGGKQKAPVFALTKEKPEDTNTVVP------------------------------ANIEL
        + T   +C SC K+H+  C + K      + TP A   A QGG Q+A VFALT+   E    VV                               A++EL
Subjt:  QATTLRLCGSCNKHHSRMCPI-KGEANTDKSTPKALPTATQGGKQKAPVFALTKEKPEDTNTVVP------------------------------ANIEL

Query:  ESLGFLL
        ESLGFLL
Subjt:  ESLGFLL

XP_022158750.1 uncharacterized protein LOC111025215 [Momordica charantia]8.6e-1828.53Show/hide
Query:  NDSVEKLVPLVILTSKALQALFDNLTQRNDGQPRNPHRGLAPTDE--EKATTTEQLIVELESL----------------------------SIEASEDRA
        +  V ++ P V L ++ALQ L DN       Q + P     P +E  E+ T  E+ + ELE+L                            S+ A+ED A
Subjt:  NDSVEKLVPLVILTSKALQALFDNLTQRNDGQPRNPHRGLAPTDE--EKATTTEQLIVELESL----------------------------SIEASEDRA

Query:  EGPMTW------------------------------------YERKFIELSRFAADLVSTSERRIKRFIRGLCEEIRGAVTLKERTT-AASLKAALIMDK
          P+TW                                    YERKF ELSRF    + T + +I +FI GL  EI+G + LKE TT AA+++ AL+MDK
Subjt:  EGPMTW------------------------------------YERKFIELSRFAADLVSTSERRIKRFIRGLCEEIRGAVTLKERTT-AASLKAALIMDK

Query:  NTAKKPQATHSCWEAGASSRFKRKSPPALSDQTSKAHRPISGQATTLRLCGSCNK--------------------HHSRMCPIKGEANTDKSTPKALPTA
           ++PQ+       G+SS  KRK     S Q S+ H+    + T   +C SC K                    H +R CP+ G              A
Subjt:  NTAKKPQATHSCWEAGASSRFKRKSPPALSDQTSKAHRPISGQATTLRLCGSCNK--------------------HHSRMCPIKGEANTDKSTPKALPTA

Query:  TQGGKQKAPVFALTKEKPEDTNTVVP------------------------------ANIELESLGFLL
         QGG  +A VFALT+   E    VV                               A++ELESLGFLL
Subjt:  TQGGKQKAPVFALTKEKPEDTNTVVP------------------------------ANIELESLGFLL

TrEMBL top hitse value%identityAlignment
A0A6J1DL73 uncharacterized protein LOC1110221446.6e-1636.9Show/hide
Query:  YERKFIELSRFAADLVSTSERRIKRFIRGLCEEIRGAVTLKERTT-AASLKAALIMDKNTAKKPQATHSCWEAGASSRFKRKSPPALSDQTSKAHRPISG
        YERKF ELSRFA +L+  +  +IKRF++GL + IRG V L+   + A +++ ALIMDK+ + K     S  E G+SS  KRK  P  +D + +A +  + 
Subjt:  YERKFIELSRFAADLVSTSERRIKRFIRGLCEEIRGAVTLKERTT-AASLKAALIMDKNTAKKPQATHSCWEAGASSRFKRKSPPALSDQTSKAHRPISG

Query:  QATTLRLCGSCNKHH--------------------SRMCPIKGEANTDKSTPKALPT-ATQGGKQKAPVFALTKEKPEDTNTVVPAN
              +C +C K H                    +R CP+   ANT +   +  PT +TQG  Q+A VFALT+++  D  TVV  N
Subjt:  QATTLRLCGSCNKHH--------------------SRMCPIKGEANTDKSTPKALPT-ATQGGKQKAPVFALTKEKPEDTNTVVPAN

A0A6J1DQB9 Reverse transcriptase1.9e-1537.63Show/hide
Query:  YERKFIELSRFAADLVSTSERRIKRFIRGLCEEIRGAVTLKERTT-AASLKAALIMDKNTAKKPQATHSCWEAGASSRFKRKSPPALSDQTSKAHRPISG
        YERKF ELSRF    V T + +I +FI GL  EI+G + LKE TT AA+++ AL+MDK   ++PQ+       G++S  KRK     + Q+S+ H+  + 
Subjt:  YERKFIELSRFAADLVSTSERRIKRFIRGLCEEIRGAVTLKERTT-AASLKAALIMDKNTAKKPQATHSCWEAGASSRFKRKSPPALSDQTSKAHRPISG

Query:  QATTLRLCGSCNKHHSRMCPIKGE-------------------ANT---DKSTPKALPTATQGGKQKAPVFALTKEKPEDTNTVVPANIELESL
        + T   +C SC K+H+R C +  +                   +NT    + TP A  TATQGG Q A VFALT+   E    VV   I + S+
Subjt:  QATTLRLCGSCNKHHSRMCPIKGE-------------------ANT---DKSTPKALPTATQGGKQKAPVFALTKEKPEDTNTVVPANIELESL

A0A6J1DTA8 uncharacterized protein LOC1110241142.5e-1537.2Show/hide
Query:  YERKFIELSRFAADLVSTSERRIKRFIRGLCEEIRGAVTLKERTT-AASLKAALIMDKNTAKKPQATHSCWEAGASSRFKRKSPPALSDQTSKAHRPISG
        YERKF ELSRF    + T + +I +FI GL  EI+G + +KE TT AA+++ AL+MDK   ++PQ+       G+SS  KRK     S Q+S+ H+    
Subjt:  YERKFIELSRFAADLVSTSERRIKRFIRGLCEEIRGAVTLKERTT-AASLKAALIMDKNTAKKPQATHSCWEAGASSRFKRKSPPALSDQTSKAHRPISG

Query:  QATTLRLCGSCNKHHSRMCPI-KGEANTDKSTPKALPTATQGGKQKAPVFALTKEKPEDTNTVVP------------------------------ANIEL
        + T   +C SC K+H+  C + K      + TP A   A QGG Q+A VFALT+   E    VV                               A++EL
Subjt:  QATTLRLCGSCNKHHSRMCPI-KGEANTDKSTPKALPTATQGGKQKAPVFALTKEKPEDTNTVVP------------------------------ANIEL

Query:  ESLGFLL
        ESLGFLL
Subjt:  ESLGFLL

A0A6J1DUM2 uncharacterized protein LOC1110232471.1e-1536.17Show/hide
Query:  YERKFIELSRFAADLVSTSERRIKRFIRGLCEEIRGAVTLKERTT-AASLKAALIMDKNTAKKPQATHSCWEAGASSRFKRKSPPALSDQTSKAHRPISG
        YERKF ELSRFA +L+ T   +IKRF++GL + IRG V L+  TT A +++ AL+MDK+ + K        E G+SS  KRK P   +D   +A +  + 
Subjt:  YERKFIELSRFAADLVSTSERRIKRFIRGLCEEIRGAVTLKERTT-AASLKAALIMDKNTAKKPQATHSCWEAGASSRFKRKSPPALSDQTSKAHRPISG

Query:  QATTLRLCGSCNKHH--------------------SRMCPIKGEANTDKSTPK-ALPTATQGGKQKAPVFALTKEKPEDTNTVVPANI
              +C +C K H                    +R CP+   ANT +   +   P +TQG  Q+A VFALT+++  D  TVV   +
Subjt:  QATTLRLCGSCNKHH--------------------SRMCPIKGEANTDKSTPK-ALPTATQGGKQKAPVFALTKEKPEDTNTVVPANI

A0A6J1DWP4 uncharacterized protein LOC1110252154.1e-1828.53Show/hide
Query:  NDSVEKLVPLVILTSKALQALFDNLTQRNDGQPRNPHRGLAPTDE--EKATTTEQLIVELESL----------------------------SIEASEDRA
        +  V ++ P V L ++ALQ L DN       Q + P     P +E  E+ T  E+ + ELE+L                            S+ A+ED A
Subjt:  NDSVEKLVPLVILTSKALQALFDNLTQRNDGQPRNPHRGLAPTDE--EKATTTEQLIVELESL----------------------------SIEASEDRA

Query:  EGPMTW------------------------------------YERKFIELSRFAADLVSTSERRIKRFIRGLCEEIRGAVTLKERTT-AASLKAALIMDK
          P+TW                                    YERKF ELSRF    + T + +I +FI GL  EI+G + LKE TT AA+++ AL+MDK
Subjt:  EGPMTW------------------------------------YERKFIELSRFAADLVSTSERRIKRFIRGLCEEIRGAVTLKERTT-AASLKAALIMDK

Query:  NTAKKPQATHSCWEAGASSRFKRKSPPALSDQTSKAHRPISGQATTLRLCGSCNK--------------------HHSRMCPIKGEANTDKSTPKALPTA
           ++PQ+       G+SS  KRK     S Q S+ H+    + T   +C SC K                    H +R CP+ G              A
Subjt:  NTAKKPQATHSCWEAGASSRFKRKSPPALSDQTSKAHRPISGQATTLRLCGSCNK--------------------HHSRMCPIKGEANTDKSTPKALPTA

Query:  TQGGKQKAPVFALTKEKPEDTNTVVP------------------------------ANIELESLGFLL
         QGG  +A VFALT+   E    VV                               A++ELESLGFLL
Subjt:  TQGGKQKAPVFALTKEKPEDTNTVVP------------------------------ANIELESLGFLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTATTTCGAATAATTCGGTGTTGGGCTTTGATTCATTGTAGTGAGTTGAATGATTCTGTTGAGAAGCTAGTTCCCCTAGTTATCCTAACATCCAAGGCTCTC
CAGGCTCTTTTTGATAACTTGACCCAAAGAAACGACGGCCAACCTCGCAACCCACATCGAGGTCTAGCCCCTACAGACGAAGAGAAAGCTACCACAACTGAGCAG
TTGATTGTAGAGCTGGAGTCATTATCCATTGAAGCCTCAGAAGATCGTGCTGAAGGACCCATGACTTGGTATGAAAGGAAGTTCATTGAGTTGTCTCGTTTTGCA
GCCGACCTGGTGAGTACGTCAGAGAGAAGGATTAAGAGGTTCATTAGGGGCCTGTGCGAGGAAATCAGAGGTGCAGTCACCTTAAAGGAGCGGACGACTGCTGCA
TCGCTTAAGGCTGCCCTGATCATGGACAAAAATACAGCCAAAAAACCTCAGGCGACACACTCATGTTGGGAGGCTGGTGCCTCATCTAGATTTAAAAGGAAGTCT
CCCCCAGCTCTATCAGATCAAACTTCCAAGGCCCATCGTCCGATCTCGGGGCAAGCTACCACCCTCCGATTGTGCGGCTCGTGCAACAAGCATCACTCGAGGATG
TGCCCAATTAAAGGGGAGGCCAACACAGACAAGTCGACCCCGAAGGCCCTACCAACAGCTACTCAAGGAGGAAAACAAAAGGCACCCGTCTTTGCACTTACCAAA
GAGAAGCCTGAGGATACGAACACAGTGGTTCCAGCGAATATAGAATTAGAGTCTTTAGGTTTCTTGTTAGGGGGTCGTGGTGCTATAGGGCGACACTACGGGTGT
CTTGAAGAGATTAATATTTCACAGGATGATCATATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTATTTCGAATAATTCGGTGTTGGGCTTTGATTCATTGTAGTGAGTTGAATGATTCTGTTGAGAAGCTAGTTCCCCTAGTTATCCTAACATCCAAGGCTCTC
CAGGCTCTTTTTGATAACTTGACCCAAAGAAACGACGGCCAACCTCGCAACCCACATCGAGGTCTAGCCCCTACAGACGAAGAGAAAGCTACCACAACTGAGCAG
TTGATTGTAGAGCTGGAGTCATTATCCATTGAAGCCTCAGAAGATCGTGCTGAAGGACCCATGACTTGGTATGAAAGGAAGTTCATTGAGTTGTCTCGTTTTGCA
GCCGACCTGGTGAGTACGTCAGAGAGAAGGATTAAGAGGTTCATTAGGGGCCTGTGCGAGGAAATCAGAGGTGCAGTCACCTTAAAGGAGCGGACGACTGCTGCA
TCGCTTAAGGCTGCCCTGATCATGGACAAAAATACAGCCAAAAAACCTCAGGCGACACACTCATGTTGGGAGGCTGGTGCCTCATCTAGATTTAAAAGGAAGTCT
CCCCCAGCTCTATCAGATCAAACTTCCAAGGCCCATCGTCCGATCTCGGGGCAAGCTACCACCCTCCGATTGTGCGGCTCGTGCAACAAGCATCACTCGAGGATG
TGCCCAATTAAAGGGGAGGCCAACACAGACAAGTCGACCCCGAAGGCCCTACCAACAGCTACTCAAGGAGGAAAACAAAAGGCACCCGTCTTTGCACTTACCAAA
GAGAAGCCTGAGGATACGAACACAGTGGTTCCAGCGAATATAGAATTAGAGTCTTTAGGTTTCTTGTTAGGGGGTCGTGGTGCTATAGGGCGACACTACGGGTGT
CTTGAAGAGATTAATATTTCACAGGATGATCATATGTGA
Protein sequenceShow/hide protein sequence
MLFRIIRCWALIHCSELNDSVEKLVPLVILTSKALQALFDNLTQRNDGQPRNPHRGLAPTDEEKATTTEQLIVELESLSIEASEDRAEGPMTWYERKFIELSRFA
ADLVSTSERRIKRFIRGLCEEIRGAVTLKERTTAASLKAALIMDKNTAKKPQATHSCWEAGASSRFKRKSPPALSDQTSKAHRPISGQATTLRLCGSCNKHHSRM
CPIKGEANTDKSTPKALPTATQGGKQKAPVFALTKEKPEDTNTVVPANIELESLGFLLGGRGAIGRHYGCLEEINISQDDHM