CuGenDBv2

Gene ID	ClCG11G008385
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	RING-type E3 ubiquitin transferase
Genome location	CG_Chr11:11835698..11836099
RNA-Seq Expression	ClCG11G008385
Synteny	ClCG11G008385
Gene Ontology terms	GO:0016740 - transferase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596619.1 E3 ubiquitin-protein ligase PUB23, partial [Cucurbita argyrosperma subsp. sororia]

2.9e-13

42.96

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Query:  PLSNPPSMNPILY-LISTANTSPSSLVSSIRRLRSISADSKTNRCFV----------------------DTDSSASYGALSSLHNLRLPDSTFKRLATHP
        P   PP   P ++ LIS+++++PSSL+S IRRLRS++A+S++NR  +                      +T S + + ALS+LHNLRL DS  K L  + 
Subjt:  PLSNPPSMNPILY-LISTANTSPSSLVSSIRRLRSISADSKTNRCFV----------------------DTDSSASYGALSSLHNLRLPDSTFKRLATHP

Query:  EFLYSLTNFMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFL
        E   SLT  M+ QGT E SRAY  L+LKS+ EV DP++L FL
Subjt:  EFLYSLTNFMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFL

XP_004136517.1 E3 ubiquitin-protein ligase PUB23 [Cucumis sativus]

7.6e-30

63.5

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Query:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADSKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN
        P   PP   + IL++IST+NTSPSS +SSIRRLRSISA+S+TNR                V +DSSAS+ ALS+LHNLRL DSTFK LAT PEFL SLT+
Subjt:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADSKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN

Query:  FMKL-QGTRESSRAYVVLILKSIFEVTDPIQLRFLNP
        FMKL QGT ESSR Y VLILKSI EV +PIQL FL P
Subjt:  FMKL-QGTRESSRAYVVLILKSIFEVTDPIQLRFLNP

XP_008442921.1 PREDICTED: E3 ubiquitin-protein ligase PUB23-like [Cucumis melo]

8.1e-32

65.69

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Query:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADSKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN
        P   PP   + IL++IST+NTSPSSL+SSIRRLRSISA+S+TNR                VD+DSSAS+ ALS+LHNLRL DSTFK LATHPE L SLT+
Subjt:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADSKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN

Query:  FMKL-QGTRESSRAYVVLILKSIFEVTDPIQLRFLNP
        FMKL QGT ESSR Y VLILKSI EV DPIQL FL P
Subjt:  FMKL-QGTRESSRAYVVLILKSIFEVTDPIQLRFLNP

XP_023540239.1 E3 ubiquitin-protein ligase PUB22-like [Cucurbita pepo subsp. pepo]

2.9e-13

42.96

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Query:  PLSNPPSMNPILY-LISTANTSPSSLVSSIRRLRSISADSKTNRCFV----------------------DTDSSASYGALSSLHNLRLPDSTFKRLATHP
        P   PP   P ++ LIS+++++PSSL+S IRRLRS++A+S++NR  +                      +T S + + ALS+LHNLRL DS  K L  + 
Subjt:  PLSNPPSMNPILY-LISTANTSPSSLVSSIRRLRSISADSKTNRCFV----------------------DTDSSASYGALSSLHNLRLPDSTFKRLATHP

Query:  EFLYSLTNFMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFL
        E   SLT  M+ QGT E SRAY  L+LKS+ EV DP++L FL
Subjt:  EFLYSLTNFMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFL

XP_038903290.1 E3 ubiquitin-protein ligase PUB23-like [Benincasa hispida]

2.5e-33

68.66

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Query:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADSKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN
        P   PP   + IL+LIS+ANTSPSSL+SSI RLRSIS +S+TNR                VDTDSSASY ALS+LHNLRL DSTFKRLATH EFL SLTN
Subjt:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADSKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN

Query:  FMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFL
        FMKL+GT+ESSRAY VLILKSI EV DPIQL FL
Subjt:  FMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LB33 RING-type E3 ubiquitin transferase

3.7e-30

63.5

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Query:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADSKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN
        P   PP   + IL++IST+NTSPSS +SSIRRLRSISA+S+TNR                V +DSSAS+ ALS+LHNLRL DSTFK LAT PEFL SLT+
Subjt:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADSKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN

Query:  FMKL-QGTRESSRAYVVLILKSIFEVTDPIQLRFLNP
        FMKL QGT ESSR Y VLILKSI EV +PIQL FL P
Subjt:  FMKL-QGTRESSRAYVVLILKSIFEVTDPIQLRFLNP

A0A1S3B6U7 RING-type E3 ubiquitin transferase

3.9e-32

65.69

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Query:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADSKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN
        P   PP   + IL++IST+NTSPSSL+SSIRRLRSISA+S+TNR                VD+DSSAS+ ALS+LHNLRL DSTFK LATHPE L SLT+
Subjt:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADSKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN

Query:  FMKL-QGTRESSRAYVVLILKSIFEVTDPIQLRFLNP
        FMKL QGT ESSR Y VLILKSI EV DPIQL FL P
Subjt:  FMKL-QGTRESSRAYVVLILKSIFEVTDPIQLRFLNP

A0A5D3DNW0 RING-type E3 ubiquitin transferase

3.9e-32

65.69

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Query:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADSKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN
        P   PP   + IL++IST+NTSPSSL+SSIRRLRSISA+S+TNR                VD+DSSAS+ ALS+LHNLRL DSTFK LATHPE L SLT+
Subjt:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADSKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN

Query:  FMKL-QGTRESSRAYVVLILKSIFEVTDPIQLRFLNP
        FMKL QGT ESSR Y VLILKSI EV DPIQL FL P
Subjt:  FMKL-QGTRESSRAYVVLILKSIFEVTDPIQLRFLNP

A0A6J1GKE4 RING-type E3 ubiquitin transferase

4.1e-13

42.25

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Query:  PLSNPPSMNPILY-LISTANTSPSSLVSSIRRLRSISADSKTNRCFV----------------------DTDSSASYGALSSLHNLRLPDSTFKRLATHP
        P   PP   P ++ LIS+++++PSSL+S IRRLRS++A+S++NR  +                      +T S + + ALS+LHNLRL DS  K L  + 
Subjt:  PLSNPPSMNPILY-LISTANTSPSSLVSSIRRLRSISADSKTNRCFV----------------------DTDSSASYGALSSLHNLRLPDSTFKRLATHP

Query:  EFLYSLTNFMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFL
        E   SLT  M+ QGT E SRAY  L+ KS+ EV DP++L FL
Subjt:  EFLYSLTNFMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFL

A0A6J1KXX6 RING-type E3 ubiquitin transferase

4.1e-13

42.96

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Query:  PLSNPPSMNPILY-LISTANTSPSSLVSSIRRLRSISADSKTNRCFV------------------DTDSSAS----YGALSSLHNLRLPDSTFKRLATHP
        P   PP   P ++ LIS+++++PSSL+S IRRLRS++A+S++NR  +                  D D+  +    + ALS+LHNLRL DS  K L  + 
Subjt:  PLSNPPSMNPILY-LISTANTSPSSLVSSIRRLRSISADSKTNRCFV------------------DTDSSAS----YGALSSLHNLRLPDSTFKRLATHP

Query:  EFLYSLTNFMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFL
        E   SLT  M+ QGT E SRAY  L+LKS+ EV DP++L FL
Subjt:  EFLYSLTNFMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G35930.1 plant U-box 23

5.8e-04

32.62

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Query:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADSKTN-RC------------FVDTDS---SASYGALSSLHNLRLPDSTFKRLATHPE---FL
        P   PP   + I  LI  + +S  + V  ++RLR I +++ TN RC             V  DS   S +  AL+ L++L   ++  K L  + +    +
Subjt:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADSKTN-RC------------FVDTDS---SASYGALSSLHNLRLPDSTFKRLATHPE---FL

Query:  YSLTNFMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFLNP
         SLT  M+ +G  E SR Y  L+LK+I EV DP+Q   L P
Subjt:  YSLTNFMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFLNP

Sequences

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CDS sequence

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ATGGCTTCCCCACTCTCAAACCCCCCATCCATGAATCCAATCCTCTACCTCATTTCTACTGCCAACACTTCCCCTTCTTCCTTAGTCTCCTCCATCAGACGTCTCCGCTC
TATCTCCGCCGACTCTAAAACCAACCGCTGTTTTGTCGACACCGACTCCTCTGCTTCCTATGGAGCTCTCTCCTCTCTCCATAACCTCCGTCTCCCCGATTCAACATTCA
AACGCTTGGCTACCCACCCTGAGTTTCTCTATTCATTGACGAATTTCATGAAGTTACAGGGTACTCGTGAATCGTCCAGAGCATACGTGGTGTTGATTTTGAAATCGATC
TTCGAAGTCACTGATCCAATTCAACTAAGATTCTTAAATCCGATTAATTTGTGCAAATTGTTGAGATTTTGA

mRNA sequence

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Protein sequence

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MASPLSNPPSMNPILYLISTANTSPSSLVSSIRRLRSISADSKTNRCFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTNFMKLQGTRESSRAYVVLILKSI
FEVTDPIQLRFLNPINLCKLLRF

ClCG11G008385 (gene) of Watermelon (Charleston Gray) v2.5 genome