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ClCG11G008425 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG11G008425
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotransposon protein
Genome locationCG_Chr11:11941406..11941813
RNA-Seq ExpressionClCG11G008425
SyntenyClCG11G008425
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038975.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-2259.09Show/hide
Query:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGS
        ++ R++TLKR +  IAEM G  CSGFGWN E K I  E ++FD WV+SHP+AK L +K FPYYD+LT VFG+DRAT   A T A+VGS
Subjt:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGS

KAA0057610.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-2254.63Show/hide
Query:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGS-EP-------VM
        ++ R++TLKR +  IAEM G  CSGFGWN E K I  E ++FD WV+SHP+AK L +K FPYYD+LT VFG+DRAT   A T A+VGS EP        M
Subjt:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGS-EP-------VM

Query:  EEKNEDIL
         + NED L
Subjt:  EEKNEDIL

KAA0064022.1 retrotransposon protein [Cucumis melo var. makuwa]4.3e-2360.23Show/hide
Query:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGS
        ++ R++TLKR +  IAEM G  CSGFGWN E K I  E ++FD WV+SHP+AK L +KSFPYYD+LT VFG+DRAT   A T A+VGS
Subjt:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGS

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]1.2e-2250Show/hide
Query:  MQVSPHLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGSE-----
        +Q S  ++  V++LK+ Y+ IAEM G  CSGFGWN E + I  E  +FD W+KSHP+AK L HKSFPYYDDL+ VFGKDRAT + + T   VGS      
Subjt:  MQVSPHLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGSE-----

Query:  ----PVMEEKNEDI
            P+ +  +EDI
Subjt:  ----PVMEEKNEDI

XP_038987004.1 uncharacterized protein At2g29880-like [Phoenix dactylifera]9.5e-2351.49Show/hide
Query:  MQVSPHLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGSEPVMEE
        ++ +PH+ESRV+ LK+QYN IAEMLG  CSGFGW+   K + CE   F  WVKSHP+A+ + +K FP+++DLT +FG+DRAT   A   A+   E  MEE
Subjt:  MQVSPHLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGSEPVMEE

Query:  K
        +
Subjt:  K

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859536.0e-2350Show/hide
Query:  MQVSPHLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGSE-----
        +Q S  ++  V++LK+ Y+ IAEM G  CSGFGWN E + I  E  +FD W+KSHP+AK L HKSFPYYDDL+ VFGKDRAT + + T   VGS      
Subjt:  MQVSPHLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGSE-----

Query:  ----PVMEEKNEDI
            P+ +  +EDI
Subjt:  ----PVMEEKNEDI

A0A5A7U0H7 Retrotransposon protein6.0e-2350Show/hide
Query:  MQVSPHLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGSE-----
        +Q S  ++  V++LK+ Y+ IAEM G  CSGFGWN E + I  E  +FD W+KSHP+AK L HKSFPYYDDL+ VFGKDRAT + + T   VGS      
Subjt:  MQVSPHLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGSE-----

Query:  ----PVMEEKNEDI
            P+ +  +EDI
Subjt:  ----PVMEEKNEDI

A0A5A7UR77 Retrotransposon protein6.0e-2354.63Show/hide
Query:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGS-EP-------VM
        ++ R++TLKR +  IAEM G  CSGFGWN E K I  E ++FD WV+SHP+AK L +K FPYYD+LT VFG+DRAT   A T A+VGS EP        M
Subjt:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGS-EP-------VM

Query:  EEKNEDIL
         + NED L
Subjt:  EEKNEDIL

A0A5A7V6Q9 Retrotransposon protein2.1e-2360.23Show/hide
Query:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGS
        ++ R++TLKR +  IAEM G  CSGFGWN E K I  E ++FD WV+SHP+AK L +KSFPYYD+LT VFG+DRAT   A T A+VGS
Subjt:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGS

A0A5D3CWL2 Retrotransposon protein7.9e-2359.09Show/hide
Query:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGS
        ++ R++TLKR +  IAEM G  CSGFGWN E K I  E ++FD WV+SHP+AK L +K FPYYD+LT VFG+DRAT   A T A+VGS
Subjt:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G30140.1 unknown protein3.5e-0734.62Show/hide
Query:  SRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHA
        SR++ LK  Y    + L    SGFGW+ E K      +++  ++K+HP+ K +  +S  +++DL I+FG   AT S A
Subjt:  SRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHA

AT2G24960.1 unknown protein1.1e-0528.85Show/hide
Query:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVF------GKDRATRSHATTTAEVGSEPVMEE
        L  R   L + Y  +  +L     GF W+  R  I  +  ++D ++K HP A+    KS P Y+DL  +F      G D      A  T+E  +    +E
Subjt:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVF------GKDRATRSHATTTAEVGSEPVMEE

Query:  KNED
        +N D
Subjt:  KNED

AT2G24960.2 unknown protein1.1e-0528.85Show/hide
Query:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVF------GKDRATRSHATTTAEVGSEPVMEE
        L  R   L + Y  +  +L     GF W+  R  I  +  ++D ++K HP A+    KS P Y+DL  +F      G D      A  T+E  +    +E
Subjt:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVF------GKDRATRSHATTTAEVGSEPVMEE

Query:  KNED
        +N D
Subjt:  KNED

AT5G27260.1 unknown protein4.9e-0934.57Show/hide
Query:  HLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHA
        H  SR++ LK QY    + L    SGFGW+   K      +++  ++K+HP+ K+L + +F ++D+L I+FG+  AT  +A
Subjt:  HLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGTAAGCCCACATCTGGAGTCAAGGGTCAGGACCCTGAAGAGACAGTACAACGTGATTGCTGAAATGTTGGGCTCAGGCTGTAGTGGGTTTGGTTGGAAT
GCAGAGCGCAAATATATTGACTGTGAGGCGAAGATATTTGACATATGGGTCAAGAGTCATCCGAGTGCGAAAGAACTGTGCCATAAGTCATTTCCGTACTATGAC
GACTTGACCATAGTATTCGGCAAAGACAGAGCCACAAGGAGTCATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTATGGAAGAGAAGAACGAGGACATC
CTGAATAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGGTAAGCCCACATCTGGAGTCAAGGGTCAGGACCCTGAAGAGACAGTACAACGTGATTGCTGAAATGTTGGGCTCAGGCTGTAGTGGGTTTGGTTGGAAT
GCAGAGCGCAAATATATTGACTGTGAGGCGAAGATATTTGACATATGGGTCAAGAGTCATCCGAGTGCGAAAGAACTGTGCCATAAGTCATTTCCGTACTATGAC
GACTTGACCATAGTATTCGGCAAAGACAGAGCCACAAGGAGTCATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTATGGAAGAGAAGAACGAGGACATC
CTGAATAACTAG
Protein sequenceShow/hide protein sequence
MQVSPHLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKELCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGSEPVMEEKNEDI
LNN