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ClCG11G008980 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG11G008980
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotransposon protein
Genome locationCG_Chr11:13512552..13513316
RNA-Seq ExpressionClCG11G008980
SyntenyClCG11G008980
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041186.1 retrotransposon protein [Cucumis melo var. makuwa]4.0e-1250.56Show/hide
Query:  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKVESRNPIGLEEAMHEAQAINDEIQAMKEIK
        FR S + SL  RL+ I+QDGSY E  K+F  + AP+P ++ESVL   F+ RL+P L+A+V SR+P  LEE M EAQ +ND   A+K  K
Subjt:  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKVESRNPIGLEEAMHEAQAINDEIQAMKEIK

TYK02192.1 peroxidase 64 [Cucumis melo var. makuwa]8.7e-1537.31Show/hide
Query:  LETHERDITGLKELVFVMCKNVDQLMGEMWEITLS-RGKDGSLITKGSQKCGIGTESGFRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISES
        +E  E++I GLKE++  + K++++L  E+ E ++S   ++ S + K         +  F+   EGSL   L+ IKQDGSY +  K F  + AP+PE++ES
Subjt:  LETHERDITGLKELVFVMCKNVDQLMGEMWEITLS-RGKDGSLITKGSQKCGIGTESGFRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISES

Query:  VLKGTFINRLDPKLKAKVESRNPIGLEEAMHEAQ
        +L   F+  L+P L+ +++SR+PI LE+ M EAQ
Subjt:  VLKGTFINRLDPKLKAKVESRNPIGLEEAMHEAQ

XP_022148929.1 uncharacterized protein LOC111017476 [Momordica charantia]6.2e-1348.35Show/hide
Query:  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKVESRNPIGLEEAMHEAQAINDEIQAMKEIKSG
        FR+S+EG    RLLAIKQ+GS AE Q+ FE   AP+P++S+ VL+ TF+N LD  +++KV +  P GLE+ MH AQ + D   A++E   G
Subjt:  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKVESRNPIGLEEAMHEAQAINDEIQAMKEIKSG

XP_031745528.1 uncharacterized protein LOC116405915 [Cucumis sativus]1.1e-1243.56Show/hide
Query:  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKVESRNPIGLEEAMHEAQAINDEIQAMK--EIKSGGKKSVKG
        F+ + + SL  RL+ I+QDGSY +  K+F  + AP+P ++ESVL+  F+  L+P L+A+V SRNP+ LEE M EAQ +ND   A++  + + GG+   KG
Subjt:  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKVESRNPIGLEEAMHEAQAINDEIQAMK--EIKSGGKKSVKG

Query:  D
        +
Subjt:  D

XP_038898276.1 uncharacterized protein LOC120085983 isoform X1 [Benincasa hispida]2.4e-1247.67Show/hide
Query:  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKVESRNPIGLEEAMHEAQAINDEIQAMK
        +R   EGSL  RLL I+Q+G+YAE  K+F  +  P+P+++E VL+  F+N L+P L+A+V SR P  LEE M+EAQ ++D   A+K
Subjt:  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKVESRNPIGLEEAMHEAQAINDEIQAMK

TrEMBL top hitse value%identityAlignment
A0A5A7T3B8 Retrotransposon protein4.4e-1248.84Show/hide
Query:  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKVESRNPIGLEEAMHEAQAINDEIQAMK
        F+ S EGSL  RL+ I+QDG YA+  K+F  + AP+PE++ESVL   FI  L+  L+A+V SR+P+ LE+ M EAQ ++D   A+K
Subjt:  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKVESRNPIGLEEAMHEAQAINDEIQAMK

A0A5A7TGL5 Retrotransposon protein2.0e-1250.56Show/hide
Query:  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKVESRNPIGLEEAMHEAQAINDEIQAMKEIK
        FR S + SL  RL+ I+QDGSY E  K+F  + AP+P ++ESVL   F+ RL+P L+A+V SR+P  LEE M EAQ +ND   A+K  K
Subjt:  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKVESRNPIGLEEAMHEAQAINDEIQAMKEIK

A0A5D3BTR5 Peroxidase 644.2e-1537.31Show/hide
Query:  LETHERDITGLKELVFVMCKNVDQLMGEMWEITLS-RGKDGSLITKGSQKCGIGTESGFRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISES
        +E  E++I GLKE++  + K++++L  E+ E ++S   ++ S + K         +  F+   EGSL   L+ IKQDGSY +  K F  + AP+PE++ES
Subjt:  LETHERDITGLKELVFVMCKNVDQLMGEMWEITLS-RGKDGSLITKGSQKCGIGTESGFRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISES

Query:  VLKGTFINRLDPKLKAKVESRNPIGLEEAMHEAQ
        +L   F+  L+P L+ +++SR+PI LE+ M EAQ
Subjt:  VLKGTFINRLDPKLKAKVESRNPIGLEEAMHEAQ

A0A5D3DUJ0 Ty3/gypsy retrotransposon protein9.7e-1248.75Show/hide
Query:  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKVESRNPIGLEEAMHEAQAIND
        F+   EGSL  RL+ IKQDG Y++  K+F  + AP+PE++ESVL   F+  L+  L+A+V+SR+P+ LEE M EAQ ++D
Subjt:  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKVESRNPIGLEEAMHEAQAIND

A0A6J1D5H9 uncharacterized protein LOC1110174763.0e-1348.35Show/hide
Query:  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKVESRNPIGLEEAMHEAQAINDEIQAMKEIKSG
        FR+S+EG    RLLAIKQ+GS AE Q+ FE   AP+P++S+ VL+ TF+N LD  +++KV +  P GLE+ MH AQ + D   A++E   G
Subjt:  FRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVLKGTFINRLDPKLKAKVESRNPIGLEEAMHEAQAINDEIQAMKEIKSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGGAAGGAGGCGGAAGATAAGTTGGAGACGCACGAACGGGATATAACCGGGTTGAAGGAACTAGTCTTCGTGATGTGTAAGAACGTCGATCAGCTGATGGGGGA
AATGTGGGAAATAACGCTGAGTAGAGGCAAGGATGGGTCACTGATTACGAAAGGCTCACAGAAATGCGGAATAGGCACCGAGTCCGGTTTTAGACGTTCACGAGAGGGAA
GCTTGACGAGAAGGTTGCTGGCGATTAAACAAGATGGAAGCTACGCCGAAAACCAAAAGCAATTTGAGAGGTTCTTCGCGCCTATACCAGAGATATCAGAATCGGTTTTA
AAGGGAACTTTTATCAACAGATTGGATCCGAAGTTGAAGGCGAAGGTCGAAAGTAGGAATCCGATCGGTTTGGAAGAGGCGATGCATGAAGCGCAAGCCATCAACGACGA
AATCCAAGCAATGAAGGAGATTAAGAGCGGCGGAAAGAAATCAGTGAAGGGAGACGTGAAGGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGGAAGGAGGCGGAAGATAAGTTGGAGACGCACGAACGGGATATAACCGGGTTGAAGGAACTAGTCTTCGTGATGTGTAAGAACGTCGATCAGCTGATGGGGGA
AATGTGGGAAATAACGCTGAGTAGAGGCAAGGATGGGTCACTGATTACGAAAGGCTCACAGAAATGCGGAATAGGCACCGAGTCCGGTTTTAGACGTTCACGAGAGGGAA
GCTTGACGAGAAGGTTGCTGGCGATTAAACAAGATGGAAGCTACGCCGAAAACCAAAAGCAATTTGAGAGGTTCTTCGCGCCTATACCAGAGATATCAGAATCGGTTTTA
AAGGGAACTTTTATCAACAGATTGGATCCGAAGTTGAAGGCGAAGGTCGAAAGTAGGAATCCGATCGGTTTGGAAGAGGCGATGCATGAAGCGCAAGCCATCAACGACGA
AATCCAAGCAATGAAGGAGATTAAGAGCGGCGGAAAGAAATCAGTGAAGGGAGACGTGAAGGCCTAA
Protein sequenceShow/hide protein sequence
MARKEAEDKLETHERDITGLKELVFVMCKNVDQLMGEMWEITLSRGKDGSLITKGSQKCGIGTESGFRRSREGSLTRRLLAIKQDGSYAENQKQFERFFAPIPEISESVL
KGTFINRLDPKLKAKVESRNPIGLEEAMHEAQAINDEIQAMKEIKSGGKKSVKGDVKA