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ClCG11G010100 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG11G010100
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTy3-gypsy retrotransposon protein
Genome locationCG_Chr11:18452391..18452964
RNA-Seq ExpressionClCG11G010100
SyntenyClCG11G010100
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048607.1 hypothetical protein E6C27_scaffold61G002600 [Cucumis melo var. makuwa]2.2e-0645.07Show/hide
Query:  MFEGTIDPNDAKAWLNLIEKCFR--------------VIVEWTNFSKLVEAALKVEKSLFEEKTEQETFRG
        +FEG+ DP DA+ WLN++EKC R                 +W NFS+LVE AL+VE+S+ EEK+  E  RG
Subjt:  MFEGTIDPNDAKAWLNLIEKCFR--------------VIVEWTNFSKLVEAALKVEKSLFEEKTEQETFRG

KAA0066541.1 uncharacterized protein E6C27_scaffold25G001020 [Cucumis melo var. makuwa]5.9e-0439.44Show/hide
Query:  FEGTIDPNDAKAWLNLIEKCFRVI---------------VEWTNFSKLVEAALKVEKSLFEEKTEQETFRG
        FEGT + ++AK WL+LIEKC  VI                +W++F+KLVEA ++VE+ L +EK   +   G
Subjt:  FEGTIDPNDAKAWLNLIEKCFRVI---------------VEWTNFSKLVEAALKVEKSLFEEKTEQETFRG

TrEMBL top hitse value%identityAlignment
A0A5A7TL09 Ty3-gypsy retrotransposon protein6.3e-0432.38Show/hide
Query:  MFEGTIDPNDAKAWLNLIEKCFRV-------------------------------------IVEWTNFSKLVEAALKVEKSLFEEKTEQETFR-----GG
        +FE +IDP DA+ W N++EKCF V                                     I +WT+FS LVE AL++E+SL E+K+  E  R      G
Subjt:  MFEGTIDPNDAKAWLNLIEKCFRV-------------------------------------IVEWTNFSKLVEAALKVEKSLFEEKTEQETFR-----GG

Query:  RSGHQ
          GH+
Subjt:  RSGHQ

A0A5A7VHT8 Retrotransposon protein, putative, Ty3-gypsy subclass4.8e-0435.87Show/hide
Query:  MFEGTIDPNDAKAWLNLIEKCFRV-----------------------------------IVEWTNFSKLVEAALKVEKSLFEEKTEQETFRG
        MFEG+ DP DAK WLN+++K F V                                   I +WTN S+L E AL+VE+S+ EEK+  E  RG
Subjt:  MFEGTIDPNDAKAWLNLIEKCFRV-----------------------------------IVEWTNFSKLVEAALKVEKSLFEEKTEQETFRG

A0A5A7VLP5 Uncharacterized protein2.8e-0439.44Show/hide
Query:  FEGTIDPNDAKAWLNLIEKCFRVI---------------VEWTNFSKLVEAALKVEKSLFEEKTEQETFRG
        FEGT + ++AK WL+LIEKC  VI                +W++F+KLVEA ++VE+ L +EK   +   G
Subjt:  FEGTIDPNDAKAWLNLIEKCFRVI---------------VEWTNFSKLVEAALKVEKSLFEEKTEQETFRG

A0A5D3DU25 Uncharacterized protein1.0e-0645.07Show/hide
Query:  MFEGTIDPNDAKAWLNLIEKCFR--------------VIVEWTNFSKLVEAALKVEKSLFEEKTEQETFRG
        +FEG+ DP DA+ WLN++EKC R                 +W NFS+LVE AL+VE+S+ EEK+  E  RG
Subjt:  MFEGTIDPNDAKAWLNLIEKCFR--------------VIVEWTNFSKLVEAALKVEKSLFEEKTEQETFRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGAGGGCACTATAGATCCTAATGATGCTAAAGCATGGTTGAATCTAATAGAGAAGTGCTTCAGAGTTATTGTTGAGTGGACTAACTTCTCTAAGTTAGTGGAAGC
AGCCTTGAAAGTGGAGAAGAGTTTGTTTGAGGAGAAGACTGAGCAAGAGACCTTCAGAGGAGGAAGATCAGGACATCAAGCC
mRNA sequenceShow/hide mRNA sequence
GTACGGGATCGAGAGGTTTAAGGCAGTTGGTGCCACTATGTTTGAGGGCACTATAGATCCTAATGATGCTAAAGCATGGTTGAATCTAATAGAGAAGTGCTTCAGAGTTA
TTGTTGAGTGGACTAACTTCTCTAAGTTAGTGGAAGCAGCCTTGAAAGTGGAGAAGAGTTTGTTTGAGGAGAAGACTGAGCAAGAGACCTTCAGAGGAGGAAGATCAGGA
CATCAAGCC
Protein sequenceShow/hide protein sequence
MFEGTIDPNDAKAWLNLIEKCFRVIVEWTNFSKLVEAALKVEKSLFEEKTEQETFRGGRSGHQA