; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG11G010340 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG11G010340
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCG_Chr11:19510420..19513432
RNA-Seq ExpressionClCG11G010340
SyntenyClCG11G010340
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051899.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.4e-5346.38Show/hide
Query:  GQRGGNQLKNRVRGRGRNQL--TCQVFGKIGHIADICYNRYNKEFTLNFNPN-KKNSGNTFRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWYADSGAT
        G  G N  ++R RGR R     TC+V GKIGH  DICYNR+NK+F  N   N  K + N FRNNN K STA V +H  N F    EN+V+ +WYA++ A 
Subjt:  GQRGGNQLKNRVRGRGRNQL--TCQVFGKIGHIADICYNRYNKEFTLNFNPN-KKNSGNTFRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWYADSGAT

Query:  NHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNVL---------------GQPILRGILK
        NH+ ++Y NL NP+EYGG   V +GNG+ L+I S+GN  L NG Y L+L+ +L+V  IAK LVSVSK A+D +V                 Q IL+G+LK
Subjt:  NHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNVL---------------GQPILRGILK

Query:  DGL-HLEEVTVKSTGSVRTTTACEFKKPPSLNHSP----TQIATTPPAP--------VTTLQPTHP-ITQEKARIFKPKAWISKVTHDWTDTEPTRVANA
        D L HLEE  VK     +  T  + KK P+L  SP    T + ++P  P        V   + +HP IT +KA IFKPK W+S V  DWT TEPTRV  A
Subjt:  DGL-HLEEVTVKSTGSVRTTTACEFKKPPSLNHSP----TQIATTPPAP--------VTTLQPTHP-ITQEKARIFKPKAWISKVTHDWTDTEPTRVANA

Query:  IKTP
        +KTP
Subjt:  IKTP

TYJ99887.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.4e-5346.38Show/hide
Query:  GQRGGNQLKNRVRGRGRNQL--TCQVFGKIGHIADICYNRYNKEFTLNFNPN-KKNSGNTFRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWYADSGAT
        G  G N  ++R RGR R     TC+V GKIGH  DICYNR+NK+F  N   N  K + N FRNNN K STA V +H  N F    EN+V+ +WYA++ A 
Subjt:  GQRGGNQLKNRVRGRGRNQL--TCQVFGKIGHIADICYNRYNKEFTLNFNPN-KKNSGNTFRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWYADSGAT

Query:  NHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNVL---------------GQPILRGILK
        NH+ ++Y NL NP+EYGG   V +GNG+ L+I S+GN  L NG Y L+L+ +L+V  IAK LVSVSK A+D +V                 Q IL+G+LK
Subjt:  NHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNVL---------------GQPILRGILK

Query:  DGL-HLEEVTVKSTGSVRTTTACEFKKPPSLNHSP----TQIATTPPAP--------VTTLQPTHP-ITQEKARIFKPKAWISKVTHDWTDTEPTRVANA
        D L HLEE  VK     +  T  + KK P+L  SP    T + ++P  P        V   + +HP IT +KA IFKPK W+S V  DWT TEPTRV  A
Subjt:  DGL-HLEEVTVKSTGSVRTTTACEFKKPPSLNHSP----TQIATTPPAP--------VTTLQPTHP-ITQEKARIFKPKAWISKVTHDWTDTEPTRVANA

Query:  IKTP
        +KTP
Subjt:  IKTP

TYK05754.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.7e-5040Show/hide
Query:  QELFGIQSRAEKDYLHQTFQQTR---------------------QAGSPVPTSTLISQVLLKHNGEYNAIVSTLQGKSNITWLQMQSELLSYEKRLEAQN
        Q+LFG+QSRAE+D+L Q FQ TR                     QAGSPVP    ISQ LL  +  YN +++ +QGK  I+W+ MQSELL++EKRLE Q+
Subjt:  QELFGIQSRAEKDYLHQTFQQTR---------------------QAGSPVPTSTLISQVLLKHNGEYNAIVSTLQGKSNITWLQMQSELLSYEKRLEAQN

Query:  TQRNATISNNPSVIWLIAED-----------------------GQRGGNQLKNRVRGRGR-NQLTCQVFGKIGHIADICYNRYNKEFTLNFNPNKKNSGN
        TQ+N    N    +  IA++                       GQRGG  +  R RG+GR N+ TCQV  K GH A +CYNR+NKEF    +P  ++ G 
Subjt:  TQRNATISNNPSVIWLIAED-----------------------GQRGGNQLKNRVRGRGR-NQLTCQVFGKIGHIADICYNRYNKEFTLNFNPNKKNSGN

Query:  TFRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWYADSGATNHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIA
           N +   +  ++ T    + +   +  +  +WY DSGATNH+   Y+NL+NP EY G E ++VGNG++L I+ +GN  LT+G   LNL  +L V  I 
Subjt:  TFRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWYADSGATNHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIA

Query:  KTLVSVSKLAKDNNV---------------LGQPILRGILKDGL-HLEEV
        K LVSVSKLA+DNNV                G+ +L   +KDGL HL+ +
Subjt:  KTLVSVSKLAKDNNV---------------LGQPILRGILKDGL-HLEEV

XP_016902197.1 PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo]1.8e-4344.37Show/hide
Query:  QELFGIQSRAEKDYLHQTFQQTRQAGSPVPTSTLISQVLLKHNGEYNAIVSTLQGKSNITWLQMQSELLSYEKRLEAQNTQRNAT--ISNNP--SVIWLI
        Q+ FG+QSRAE+D+L Q  Q TR+    V                YN ++  +QGK +I+WL MQS+LL +EKRL+ QNTQ+  T  I+ +P  ++    
Subjt:  QELFGIQSRAEKDYLHQTFQQTRQAGSPVPTSTLISQVLLKHNGEYNAIVSTLQGKSNITWLQMQSELLSYEKRLEAQNTQRNAT--ISNNP--SVIWLI

Query:  AEDGQRGGNQLK----NR-----VRGRGRNQLTCQVFGKIGHIADICYNRYNKEFTLNFNPNKKNSGNTFRNNNGKPSTAM-VATHNGNSFYTNYENTVE
        A +GQR  +  K    NR      RG   N  TCQ+ GK GH A +CYNR+NKEF+   +P  +N      N +  P+ A+ V+T N   F T  +  V+
Subjt:  AEDGQRGGNQLK----NR-----VRGRGRNQLTCQVFGKIGHIADICYNRYNKEFTLNFNPNKKNSGNTFRNNNGKPSTAM-VATHNGNSFYTNYENTVE

Query:  QSWYADSGATNHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNV
         +WY DSGATNHV    +N+TNP EY G E V VGNGN L I+ VGN  LT+G  SL L  IL V  IAK L+SVSKLA+DN++
Subjt:  QSWYADSGATNHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNV

XP_038905161.1 uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida]3.8e-4141.61Show/hide
Query:  IQELFGIQSRAEKDYLHQTFQQTR---------------------QAGSPVPTSTLISQVLLKHNGEYNAIVSTLQGKSNITWLQMQSELLSYEKRLEAQ
        I +LFG+QSR E+DYL   FQ TR                     QAGSP+P  TL+SQVLL  + EYNAIV+ +QG+ +++WL MQSELL YE+RLE Q
Subjt:  IQELFGIQSRAEKDYLHQTFQQTR---------------------QAGSPVPTSTLISQVLLKHNGEYNAIVSTLQGKSNITWLQMQSELLSYEKRLEAQ

Query:  NTQR------------------------NATISNNPSVIWLIAEDGQRGGNQLKNRVRGRGRN--QLTCQVFGKIGHIADICYNRYNKEFTLNFNPNKKN
        + Q+                        N T S+N S+       GQRGG     R RGRGRN  +  CQV GK+GHIA  C+NRY+++F  N   NK  
Subjt:  NTQR------------------------NATISNNPSVIWLIAEDGQRGGNQLKNRVRGRGRN--QLTCQVFGKIGHIADICYNRYNKEFTLNFNPNKKN

Query:  SGNTFRNNNGKP-STAMVATHNGNSFYTNYENTVEQSWYADSGATNHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIIL
             +  N +P  TA+   +  N F T  EN  + +WY DSGA+NHV S++NNL NP+EY        G GNTL I+ VG   L++   +L LN +L
Subjt:  SGNTFRNNNGKP-STAMVATHNGNSFYTNYENTVEQSWYADSGATNHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIIL

TrEMBL top hitse value%identityAlignment
A0A1S4E1U6 uncharacterized protein LOC107991581 isoform X18.9e-4444.37Show/hide
Query:  QELFGIQSRAEKDYLHQTFQQTRQAGSPVPTSTLISQVLLKHNGEYNAIVSTLQGKSNITWLQMQSELLSYEKRLEAQNTQRNAT--ISNNP--SVIWLI
        Q+ FG+QSRAE+D+L Q  Q TR+    V                YN ++  +QGK +I+WL MQS+LL +EKRL+ QNTQ+  T  I+ +P  ++    
Subjt:  QELFGIQSRAEKDYLHQTFQQTRQAGSPVPTSTLISQVLLKHNGEYNAIVSTLQGKSNITWLQMQSELLSYEKRLEAQNTQRNAT--ISNNP--SVIWLI

Query:  AEDGQRGGNQLK----NR-----VRGRGRNQLTCQVFGKIGHIADICYNRYNKEFTLNFNPNKKNSGNTFRNNNGKPSTAM-VATHNGNSFYTNYENTVE
        A +GQR  +  K    NR      RG   N  TCQ+ GK GH A +CYNR+NKEF+   +P  +N      N +  P+ A+ V+T N   F T  +  V+
Subjt:  AEDGQRGGNQLK----NR-----VRGRGRNQLTCQVFGKIGHIADICYNRYNKEFTLNFNPNKKNSGNTFRNNNGKPSTAM-VATHNGNSFYTNYENTVE

Query:  QSWYADSGATNHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNV
         +WY DSGATNHV    +N+TNP EY G E V VGNGN L I+ VGN  LT+G  SL L  IL V  IAK L+SVSKLA+DN++
Subjt:  QSWYADSGATNHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNV

A0A5A7UEH3 Retrovirus-related Pol polyprotein from transposon TNT 1-943.6e-5346.38Show/hide
Query:  GQRGGNQLKNRVRGRGRNQL--TCQVFGKIGHIADICYNRYNKEFTLNFNPN-KKNSGNTFRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWYADSGAT
        G  G N  ++R RGR R     TC+V GKIGH  DICYNR+NK+F  N   N  K + N FRNNN K STA V +H  N F    EN+V+ +WYA++ A 
Subjt:  GQRGGNQLKNRVRGRGRNQL--TCQVFGKIGHIADICYNRYNKEFTLNFNPN-KKNSGNTFRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWYADSGAT

Query:  NHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNVL---------------GQPILRGILK
        NH+ ++Y NL NP+EYGG   V +GNG+ L+I S+GN  L NG Y L+L+ +L+V  IAK LVSVSK A+D +V                 Q IL+G+LK
Subjt:  NHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNVL---------------GQPILRGILK

Query:  DGL-HLEEVTVKSTGSVRTTTACEFKKPPSLNHSP----TQIATTPPAP--------VTTLQPTHP-ITQEKARIFKPKAWISKVTHDWTDTEPTRVANA
        D L HLEE  VK     +  T  + KK P+L  SP    T + ++P  P        V   + +HP IT +KA IFKPK W+S V  DWT TEPTRV  A
Subjt:  DGL-HLEEVTVKSTGSVRTTTACEFKKPPSLNHSP----TQIATTPPAP--------VTTLQPTHP-ITQEKARIFKPKAWISKVTHDWTDTEPTRVANA

Query:  IKTP
        +KTP
Subjt:  IKTP

A0A5D3BEZ6 Putative mitochondrial protein7.3e-3831.05Show/hide
Query:  VPTSTLISQVLLKHNGEYNAIVSTLQGKSNITWLQMQSELLSYEKRLEAQNTQRNATISNNPSVIWLIAEDGQRGGNQLKNRVRGRGRNQLTCQVFGKIG
        V  S L  +VLL+ +  YN +++ +QGK  I+W+ MQSELL +EKRLE QN Q+N                    GN ++N             V GK G
Subjt:  VPTSTLISQVLLKHNGEYNAIVSTLQGKSNITWLQMQSELLSYEKRLEAQNTQRNATISNNPSVIWLIAEDGQRGGNQLKNRVRGRGRNQLTCQVFGKIG

Query:  HIADICYNRYNKEFTLNFNPNKKNSGNTFRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWYADSGATNHVISNYNNLTNPMEYGGNELVIVGNGNTLQI
        H A +CYNR+NKEF      ++    + F   +    TA+V   + N F T  +  ++ +WY DSGATNHV + Y+NL+NP EY                
Subjt:  HIADICYNRYNKEFTLNFNPNKKNSGNTFRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWYADSGATNHVISNYNNLTNPMEYGGNELVIVGNGNTLQI

Query:  ASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNVLGQP---ILRGILKDGLHLEEVTVKSTGSVRTTTACEFKKPPSLNHSPTQI-ATTP--
                TN               +A + V+V K       LG P   +L  ++K+        VK    V    +C+  K  +L    +Q  AT P  
Subjt:  ASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNVLGQP---ILRGILKDGLHLEEVTVKSTGSVRTTTACEFKKPPSLNHSPTQI-ATTP--

Query:  --------PAPVTT-------LQPTHPITQEKARIFKPKAWISKVTHDWTDTEPTRVANAIKTPQWTSTIDQEYEALMRNKTWRLVNPSPKLNI------
                PAPV +       +      ++ K+ IFKPKAW+   + +WT TEPT   +AI T QW    D EY  L++NKTW LV  +   NI      
Subjt:  --------PAPVTT-------LQPTHPITQEKARIFKPKAWISKVTHDWTDTEPTRVANAIKTPQWTSTIDQEYEALMRNKTWRLVNPSPKLNI------

Query:  ---------------------------------LNFNNVFLNSNLDEEVYMSKSLGYVNSQYPDYVC
                                         L+FNN FLN  LDE VYM++   YVNS  P Y+C
Subjt:  ---------------------------------LNFNNVFLNSNLDEEVYMSKSLGYVNSQYPDYVC

A0A5D3BL83 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-5346.38Show/hide
Query:  GQRGGNQLKNRVRGRGRNQL--TCQVFGKIGHIADICYNRYNKEFTLNFNPN-KKNSGNTFRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWYADSGAT
        G  G N  ++R RGR R     TC+V GKIGH  DICYNR+NK+F  N   N  K + N FRNNN K STA V +H  N F    EN+V+ +WYA++ A 
Subjt:  GQRGGNQLKNRVRGRGRNQL--TCQVFGKIGHIADICYNRYNKEFTLNFNPN-KKNSGNTFRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWYADSGAT

Query:  NHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNVL---------------GQPILRGILK
        NH+ ++Y NL NP+EYGG   V +GNG+ L+I S+GN  L NG Y L+L+ +L+V  IAK LVSVSK A+D +V                 Q IL+G+LK
Subjt:  NHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNVL---------------GQPILRGILK

Query:  DGL-HLEEVTVKSTGSVRTTTACEFKKPPSLNHSP----TQIATTPPAP--------VTTLQPTHP-ITQEKARIFKPKAWISKVTHDWTDTEPTRVANA
        D L HLEE  VK     +  T  + KK P+L  SP    T + ++P  P        V   + +HP IT +KA IFKPK W+S V  DWT TEPTRV  A
Subjt:  DGL-HLEEVTVKSTGSVRTTTACEFKKPPSLNHSP----TQIATTPPAP--------VTTLQPTHP-ITQEKARIFKPKAWISKVTHDWTDTEPTRVANA

Query:  IKTP
        +KTP
Subjt:  IKTP

A0A5D3C373 Retrovirus-related Pol polyprotein from transposon TNT 1-943.7e-5040Show/hide
Query:  QELFGIQSRAEKDYLHQTFQQTR---------------------QAGSPVPTSTLISQVLLKHNGEYNAIVSTLQGKSNITWLQMQSELLSYEKRLEAQN
        Q+LFG+QSRAE+D+L Q FQ TR                     QAGSPVP    ISQ LL  +  YN +++ +QGK  I+W+ MQSELL++EKRLE Q+
Subjt:  QELFGIQSRAEKDYLHQTFQQTR---------------------QAGSPVPTSTLISQVLLKHNGEYNAIVSTLQGKSNITWLQMQSELLSYEKRLEAQN

Query:  TQRNATISNNPSVIWLIAED-----------------------GQRGGNQLKNRVRGRGR-NQLTCQVFGKIGHIADICYNRYNKEFTLNFNPNKKNSGN
        TQ+N    N    +  IA++                       GQRGG  +  R RG+GR N+ TCQV  K GH A +CYNR+NKEF    +P  ++ G 
Subjt:  TQRNATISNNPSVIWLIAED-----------------------GQRGGNQLKNRVRGRGR-NQLTCQVFGKIGHIADICYNRYNKEFTLNFNPNKKNSGN

Query:  TFRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWYADSGATNHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIA
           N +   +  ++ T    + +   +  +  +WY DSGATNH+   Y+NL+NP EY G E ++VGNG++L I+ +GN  LT+G   LNL  +L V  I 
Subjt:  TFRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWYADSGATNHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIA

Query:  KTLVSVSKLAKDNNV---------------LGQPILRGILKDGL-HLEEV
        K LVSVSKLA+DNNV                G+ +L   +KDGL HL+ +
Subjt:  KTLVSVSKLAKDNNV---------------LGQPILRGILKDGL-HLEEV

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE16.9e-0923.93Show/hide
Query:  FQQTRQAGSPVPTSTLISQVLLKHNGEYNAIVSTLQGKSN-ITWLQMQSELLSYEKRLEAQN------------TQRNATISNNPSVIWLIAEDGQRGGN
        F Q    G P+     + +VL     EY  ++  +  K    T  ++   LL++E ++ A +            + RN T +NN              GN
Subjt:  FQQTRQAGSPVPTSTLISQVLLKHNGEYNAIVSTLQGKSN-ITWLQMQSELLSYEKRLEAQN------------TQRNATISNNPSVIWLIAEDGQRGGN

Query:  QLKNRVRGRGRNQLT-----------------------CQVFGKIGHIADICYNRYNKEFTLNFNPNKKNSGNTFRNNNGKPSTAMVATHNGNSFYTNYE
        +  NR   R  N  +                       CQ+ G  GH A  C     + F  + N  +  S   F     + + A+ + ++ N       
Subjt:  QLKNRVRGRGRNQLT-----------------------CQVFGKIGHIADICYNRYNKEFTLNFNPNKKNSGNTFRNNNGKPSTAMVATHNGNSFYTNYE

Query:  NTVEQSWYADSGATNHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNV------------
             +W  DSGAT+H+ S++NNL+    Y G + V+V +G+T+ I+  G+  L+     LNL+ IL+V  I K L+SV +L   N V            
Subjt:  NTVEQSWYADSGATNHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNV------------

Query:  ---LGQPILRGILKDGLHLEEVTVKSTGSVRTTTACEFKKPPS-LNHSPTQIATTPPAP-----------VTTLQPTHPITQEKARIFKPKAWISKVTHD
            G P+L+G  KD L+  E  + S+  V       F  P S   HS        PAP           ++ L P+H        +       +KV   
Subjt:  ---LGQPILRGILKDGLHLEEVTVKSTGSVRTTTACEFKKPPS-LNHSPTQIATTPPAP-----------VTTLQPTHPITQEKARIFKPKAWISKVTHD

Query:  WTDTEPTRVANAIKTPQWTSTI
         +    TR    I +  W+S I
Subjt:  WTDTEPTRVANAIKTPQWTSTI

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE25.4e-1425.16Show/hide
Query:  FQQTRQAGSPVPTSTLISQVLLKHNGEYNAIVSTLQGKSNITWL-QMQSELLSYEKRLEAQNT---------------------------QRNATISNNP
        F Q    G P+     + +VL     +Y  ++  +  K     L ++   L++ E +L A N+                            RN   +NN 
Subjt:  FQQTRQAGSPVPTSTLISQVLLKHNGEYNAIVSTLQGKSNITWL-QMQSELLSYEKRLEAQNT---------------------------QRNATISNNP

Query:  SVIWLIAEDGQRGGNQLKNRVRGRGRNQLTCQVFGKIGHIADICYNRYNKEFTLNFNPNKKNSGNTFRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWY
        S  W  +  G R  N+      GR      CQ+    GH A  C   +  + T     N++ S + F     + + A+ + +N N            +W 
Subjt:  SVIWLIAEDGQRGGNQLKNRVRGRGRNQLTCQVFGKIGHIADICYNRYNKEFTLNFNPNKKNSGNTFRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWY

Query:  ADSGATNHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNV---------------LGQPI
         DSGAT+H+ S++NNL+    Y G + V++ +G+T+ I   G+  L     SL+LN +L+V  I K L+SV +L   N V                G P+
Subjt:  ADSGATNHVISNYNNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNV---------------LGQPI

Query:  LRGILKDGLH
        L+G  KD L+
Subjt:  LRGILKDGLH

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.1e-0246.51Show/hide
Query:  VNPSPKLNILNFNNVFLNSNLDEEVYMSKSLGYVNSQYPDYVC
        V+ S  +  L+ NN FL   L +EVYMS+  G+V+   PDYVC
Subjt:  VNPSPKLNILNFNNVFLNSNLDEEVYMSKSLGYVNSQYPDYVC

Arabidopsis top hitse value%identityAlignment
ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)8.0e-0539.19Show/hide
Query:  ITQEKARIFKPKAWISKVTHDWTDTEPTRVANAIKTPQWTSTIDQEYEALMRNKTWRLVNPSPKLNILNFNNVF
        +T+ KA I K     S         EP  V  A+K P W   + +E +AL RNKTW LV P    NIL    VF
Subjt:  ITQEKARIFKPKAWISKVTHDWTDTEPTRVANAIKTPQWTSTIDQEYEALMRNKTWRLVNPSPKLNILNFNNVF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTTAAAACTCCATGACACCATAGGTGGAAACACAACTCATGTAATCCAAGAACTGTTTGGGATTCAATCTAGGGCAGAAAAAGACTATCTTCATCAAACCTTCCA
ACAAACAAGGCAAGCTGGGAGCCCCGTTCCAACAAGCACACTGATCTCACAAGTCCTTCTCAAACATAATGGAGAATATAATGCCATTGTTTCCACTCTCCAAGGGAAGT
CGAATATTACATGGTTGCAAATGCAATCTGAGTTACTATCATATGAGAAGAGATTGGAAGCCCAAAACACGCAAAGGAATGCAACTATAAGTAATAATCCCTCCGTAATA
TGGCTAATAGCAGAGGATGGACAACGTGGAGGAAACCAATTAAAAAATAGAGTTCGAGGTAGGGGCCGAAATCAACTGACATGTCAAGTTTTTGGGAAAATCGGCCACAT
TGCAGACATATGCTACAATCGATATAACAAGGAGTTTACTCTTAACTTCAATCCGAACAAAAAGAATAGTGGAAACACCTTCAGAAACAACAATGGAAAACCTTCTACTG
CCATGGTTGCCACACACAATGGAAATTCCTTTTACACAAATTATGAAAACACAGTTGAACAAAGTTGGTATGCTGATAGTGGAGCAACCAATCATGTGATTTCAAACTAC
AACAACCTCACTAATCCTATGGAATATGGAGGTAATGAATTGGTAATTGTAGGTAATGGTAATACATTACAAATTGCTTCTGTTGGTAACCCAATGCTGACTAATGGAAA
ATATTCGTTGAATCTAAATATTATACTACATGTTTCATATATTGCTAAAACCCTTGTTAGTGTGTCCAAGTTAGCAAAGGACAATAACGTTTTGGGGCAACCAATTTTGA
GGGGCATACTTAAAGATGGGCTTCATCTGGAAGAAGTCACTGTGAAATCTACTGGGTCGGTTAGAACTACTACTGCCTGTGAGTTCAAGAAGCCCCCATCACTGAACCAT
AGTCCAACACAAATTGCAACAACTCCACCTGCTCCGGTAACTACACTTCAGCCCACACATCCTATTACTCAAGAGAAAGCTCGGATCTTCAAACCGAAAGCTTGGATATC
AAAAGTAACACATGACTGGACTGACACTGAACCTACAAGAGTAGCTAATGCCATTAAAACACCACAATGGACATCCACCATAGATCAGGAGTATGAGGCATTGATGAGGA
ACAAGACATGGAGGTTAGTTAACCCATCTCCCAAACTTAACATTCTCAACTTCAACAATGTGTTTCTTAACAGTAATCTTGATGAAGAAGTCTACATGTCTAAATCTCTG
GGATACGTTAACTCTCAATATCCTGACTATGTTTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTTTAAAACTCCATGACACCATAGGTGGAAACACAACTCATGTAATCCAAGAACTGTTTGGGATTCAATCTAGGGCAGAAAAAGACTATCTTCATCAAACCTTCCA
ACAAACAAGGCAAGCTGGGAGCCCCGTTCCAACAAGCACACTGATCTCACAAGTCCTTCTCAAACATAATGGAGAATATAATGCCATTGTTTCCACTCTCCAAGGGAAGT
CGAATATTACATGGTTGCAAATGCAATCTGAGTTACTATCATATGAGAAGAGATTGGAAGCCCAAAACACGCAAAGGAATGCAACTATAAGTAATAATCCCTCCGTAATA
TGGCTAATAGCAGAGGATGGACAACGTGGAGGAAACCAATTAAAAAATAGAGTTCGAGGTAGGGGCCGAAATCAACTGACATGTCAAGTTTTTGGGAAAATCGGCCACAT
TGCAGACATATGCTACAATCGATATAACAAGGAGTTTACTCTTAACTTCAATCCGAACAAAAAGAATAGTGGAAACACCTTCAGAAACAACAATGGAAAACCTTCTACTG
CCATGGTTGCCACACACAATGGAAATTCCTTTTACACAAATTATGAAAACACAGTTGAACAAAGTTGGTATGCTGATAGTGGAGCAACCAATCATGTGATTTCAAACTAC
AACAACCTCACTAATCCTATGGAATATGGAGGTAATGAATTGGTAATTGTAGGTAATGGTAATACATTACAAATTGCTTCTGTTGGTAACCCAATGCTGACTAATGGAAA
ATATTCGTTGAATCTAAATATTATACTACATGTTTCATATATTGCTAAAACCCTTGTTAGTGTGTCCAAGTTAGCAAAGGACAATAACGTTTTGGGGCAACCAATTTTGA
GGGGCATACTTAAAGATGGGCTTCATCTGGAAGAAGTCACTGTGAAATCTACTGGGTCGGTTAGAACTACTACTGCCTGTGAGTTCAAGAAGCCCCCATCACTGAACCAT
AGTCCAACACAAATTGCAACAACTCCACCTGCTCCGGTAACTACACTTCAGCCCACACATCCTATTACTCAAGAGAAAGCTCGGATCTTCAAACCGAAAGCTTGGATATC
AAAAGTAACACATGACTGGACTGACACTGAACCTACAAGAGTAGCTAATGCCATTAAAACACCACAATGGACATCCACCATAGATCAGGAGTATGAGGCATTGATGAGGA
ACAAGACATGGAGGTTAGTTAACCCATCTCCCAAACTTAACATTCTCAACTTCAACAATGTGTTTCTTAACAGTAATCTTGATGAAGAAGTCTACATGTCTAAATCTCTG
GGATACGTTAACTCTCAATATCCTGACTATGTTTGTTGA
Protein sequenceShow/hide protein sequence
MTLKLHDTIGGNTTHVIQELFGIQSRAEKDYLHQTFQQTRQAGSPVPTSTLISQVLLKHNGEYNAIVSTLQGKSNITWLQMQSELLSYEKRLEAQNTQRNATISNNPSVI
WLIAEDGQRGGNQLKNRVRGRGRNQLTCQVFGKIGHIADICYNRYNKEFTLNFNPNKKNSGNTFRNNNGKPSTAMVATHNGNSFYTNYENTVEQSWYADSGATNHVISNY
NNLTNPMEYGGNELVIVGNGNTLQIASVGNPMLTNGKYSLNLNIILHVSYIAKTLVSVSKLAKDNNVLGQPILRGILKDGLHLEEVTVKSTGSVRTTTACEFKKPPSLNH
SPTQIATTPPAPVTTLQPTHPITQEKARIFKPKAWISKVTHDWTDTEPTRVANAIKTPQWTSTIDQEYEALMRNKTWRLVNPSPKLNILNFNNVFLNSNLDEEVYMSKSL
GYVNSQYPDYVC