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ClCG11G010780 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG11G010780
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionPhotosystem I assembly protein Ycf3
Genome locationCG_Chr11:21018405..21036775
RNA-Seq ExpressionClCG11G010780
SyntenyClCG11G010780
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009536 - plastid (cellular component)
GO:0042651 - thylakoid membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652973.1 hypothetical protein Csa_021105 [Cucumis sativus]6.3e-10100Show/hide
Query:  GDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH
        GDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH
Subjt:  GDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH

QEV84918.1 hypothetical chloroplast RF34 [Hexalectris colemanii]3.2e-0685.71Show/hide
Query:  LSGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH
        L GDSEIAEAWFNQAAEYWKQAIALTPG N  E H
Subjt:  LSGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH

YP_009582519.1 Ycf3 [Alstroemeria hybrid cultivar]3.2e-0685.71Show/hide
Query:  LSGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH
        L GDSEIAEAWFNQAAEYWKQAIALTPG N  E H
Subjt:  LSGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH

YP_009826471.1 photosystem I assembly protein Ycf3 [Bulbophyllum plumosum]3.2e-0685.71Show/hide
Query:  LSGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH
        L GDSEIAEAWFNQAAEYWKQAIALTPG N  E H
Subjt:  LSGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH

YP_009826545.1 photosystem I assembly protein Ycf3 [Bulbophyllum exaltatum]3.2e-0685.71Show/hide
Query:  LSGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH
        L GDSEIAEAWFNQAAEYWKQAIALTPG N  E H
Subjt:  LSGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH

TrEMBL top hitse value%identityAlignment
A0A481YML1 Photosystem I assembly protein Ycf31.6e-0685.71Show/hide
Query:  LSGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH
        L GDSEIAEAWFNQAAEYWKQAIALTPG N  E H
Subjt:  LSGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH

A0A6M3H449 Photosystem I assembly protein Ycf31.6e-0685.71Show/hide
Query:  LSGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH
        L GDSEIAEAWFNQAAEYWKQAIALTPG N  E H
Subjt:  LSGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH

A0A6M3H5Y6 Photosystem I assembly protein Ycf31.6e-0685.71Show/hide
Query:  LSGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH
        L GDSEIAEAWFNQAAEYWKQAIALTPG N  E H
Subjt:  LSGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH

A0A6M3H812 Photosystem I assembly protein Ycf31.6e-0685.71Show/hide
Query:  LSGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH
        L GDSEIAEAWFNQAAEYWKQAIALTPG N  E H
Subjt:  LSGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH

A0A6M4RHE1 Photosystem I assembly protein Ycf31.6e-0685.71Show/hide
Query:  LSGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH
        L GDSEIAEAWFNQAAEYWKQAIALTPG N  E H
Subjt:  LSGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH

SwissProt top hitse value%identityAlignment
A1E9J2 Photosystem I assembly protein Ycf33.6e-0892.86Show/hide
Query:  LSGDSEIAEAWFNQAAEYWKQAIALTPG
        L GDSEIAEAWF+QAAEYWKQAIALTPG
Subjt:  LSGDSEIAEAWFNQAAEYWKQAIALTPG

A1EA09 Photosystem I assembly protein Ycf33.6e-0892.86Show/hide
Query:  LSGDSEIAEAWFNQAAEYWKQAIALTPG
        L GDSEIAEAWF+QAAEYWKQAIALTPG
Subjt:  LSGDSEIAEAWFNQAAEYWKQAIALTPG

Q09MH7 Photosystem I assembly protein Ycf32.7e-08100Show/hide
Query:  GDSEIAEAWFNQAAEYWKQAIALTPG
        GDSEIAEAWFNQAAEYWKQAIALTPG
Subjt:  GDSEIAEAWFNQAAEYWKQAIALTPG

Q3BAN9 Photosystem I assembly protein Ycf31.6e-0882.86Show/hide
Query:  LSGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH
        L GDSEIAEAWF+QAAEYWKQAIALTPG N  E H
Subjt:  LSGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH

Q4VZH4 Photosystem I assembly protein Ycf32.7e-08100Show/hide
Query:  GDSEIAEAWFNQAAEYWKQAIALTPG
        GDSEIAEAWFNQAAEYWKQAIALTPG
Subjt:  GDSEIAEAWFNQAAEYWKQAIALTPG

Arabidopsis top hitse value%identityAlignment
ATCG00360.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.1e-0788.46Show/hide
Query:  GDSEIAEAWFNQAAEYWKQAIALTPG
        GDSE+AEAWF QAAEYWKQAI LTPG
Subjt:  GDSEIAEAWFNQAAEYWKQAIALTPG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCGTCGCTACTCGTCTGCTCATCGCACGCTCGTCTACTCGCTGCAATCACCATCGCCTTGTCTCACGTTGTTTGCTACTCATCTCACGTCATCGCCACCATCAAGG
AGTAAATTGTTTGGTTGTACCAACTTTGAAGACCACCATTGACGGCGTCTCGCTTTCCTCTCGTCTCTCGATCTCCCTCTCCAATCGATCTCTTGTCGCCTCTCGGTCTC
TCTGGCGTCTCGCTCTCCTCTCGTCTCTCGGTCTCCCTCTCCAATTGATCTCCTGTCGCCTCTCGGTCTCTCCGGCGTCTCGCTCTCCTCTTGTCTCTCGGTCTCCCTCT
CCAATCGCTCTCCGGTCGCCTCTCGGTCTCCCTATTCACTTGCTCTCATCTCGCCTCTCGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTG
GAAACAAGCCATAGCACTTACTCCCGGGGTAAACGATACAGAGATACATTAG
mRNA sequenceShow/hide mRNA sequence
ATGACCGTCGCTACTCGTCTGCTCATCGCACGCTCGTCTACTCGCTGCAATCACCATCGCCTTGTCTCACGTTGTTTGCTACTCATCTCACGTCATCGCCACCATCAAGG
AGTAAATTGTTTGGTTGTACCAACTTTGAAGACCACCATTGACGGCGTCTCGCTTTCCTCTCGTCTCTCGATCTCCCTCTCCAATCGATCTCTTGTCGCCTCTCGGTCTC
TCTGGCGTCTCGCTCTCCTCTCGTCTCTCGGTCTCCCTCTCCAATTGATCTCCTGTCGCCTCTCGGTCTCTCCGGCGTCTCGCTCTCCTCTTGTCTCTCGGTCTCCCTCT
CCAATCGCTCTCCGGTCGCCTCTCGGTCTCCCTATTCACTTGCTCTCATCTCGCCTCTCGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTG
GAAACAAGCCATAGCACTTACTCCCGGGGTAAACGATACAGAGATACATTAG
Protein sequenceShow/hide protein sequence
MTVATRLLIARSSTRCNHHRLVSRCLLLISRHRHHQGVNCLVVPTLKTTIDGVSLSSRLSISLSNRSLVASRSLWRLALLSSLGLPLQLISCRLSVSPASRSPLVSRSPS
PIALRSPLGLPIHLLSSRLSGDSEIAEAWFNQAAEYWKQAIALTPGVNDTEIH