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ClCG11G010905 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG11G010905
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotransposon protein
Genome locationCG_Chr11:21457954..21463660
RNA-Seq ExpressionClCG11G010905
SyntenyClCG11G010905
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038875070.1 uncharacterized protein LOC120067596 [Benincasa hispida]1.1e-3859.21Show/hide
Query:  FRPGHLQHLERILHEKVPGCALNQNTIECK------------------------------VEREIFNLWVQSFP-----------HYDDLSTIFGKDRAI
        FRPG+LQ  ERILHEKVPGC LNQNTI+CK                              VEREIFNLWVQS P           HYDDLST+F KDRA+
Subjt:  FRPGHLQHLERILHEKVPGCALNQNTIECK------------------------------VEREIFNLWVQSFP-----------HYDDLSTIFGKDRAI

Query:  GQSSEDPHVMVSNAFREFEDEIQLGMQDCQTPEVRQTDSPLNSDGMDEETAK
        GQSSEDP+VM +NAFREFEDEI+LG QDC TPEVRQT+SPLN D +DEE A+
Subjt:  GQSSEDPHVMVSNAFREFEDEIQLGMQDCQTPEVRQTDSPLNSDGMDEETAK

XP_038887234.1 uncharacterized protein LOC120077425 [Benincasa hispida]3.4e-4345.91Show/hide
Query:  FRPGHLQHLERILHEKVPGCALNQNTIECK------------------------------VEREIFNLWVQS-----------FPHYDDLSTIFGKDRAI
        FRPG+LQHLE+ILHEKVPGCALN+NTIECK                              VEREIF+LWV+S           FPHYDDLS +FGKDRA 
Subjt:  FRPGHLQHLERILHEKVPGCALNQNTIECK------------------------------VEREIFNLWVQS-----------FPHYDDLSTIFGKDRAI

Query:  GQSSEDPHVMVSNAFREFEDEIQLGMQDCQTPEVRQTDSPLNSDGMDEETAKHST------------------------------------------ASW
                                   DC TPEVRQT+SPLN D +DEE A+ ST                                          ASW
Subjt:  GQSSEDPHVMVSNAFREFEDEIQLGMQDCQTPEVRQTDSPLNSDGMDEETAKHST------------------------------------------ASW

Query:  QKEKYELEFGRRKEVVNVIYNIEDLTEDDQVTLINILVTYIQKTDCFLAVPEHARKR
        Q EKYELE    KEVVN IYNI+DL E+DQVTLI+++VT IQKTDCFLAVPEHARKR
Subjt:  QKEKYELEFGRRKEVVNVIYNIEDLTEDDQVTLINILVTYIQKTDCFLAVPEHARKR

XP_038895773.1 uncharacterized protein LOC120083935 [Benincasa hispida]1.8e-5559.07Show/hide
Query:  FRPGHLQHLERILHEKVPGCALNQNTIECK------------------------------VEREIFNLWVQS-----------FPHYDDLSTIFGKDRAI
        FR  +LQHLERI HEKV GCALNQNTIECK                              VEREIF+ WV+S           FPHYDDLST+FGK +A+
Subjt:  FRPGHLQHLERILHEKVPGCALNQNTIECK------------------------------VEREIFNLWVQS-----------FPHYDDLSTIFGKDRAI

Query:  GQSSEDPHVMVSNAFREFEDEIQLGMQDCQTPEVRQTDSPLNSDGMDEETAKHSTASWQKEKYELEFGRRKEVVNVIYNIEDLTEDDQVTLINILVTYIQ
        GQSSEDP+VM +NAFREFEDEI+LG QDC TP               E T     ASWQKEKYELEFGRRKEVVN IYNI+ L EDDQVTLI++LVT IQ
Subjt:  GQSSEDPHVMVSNAFREFEDEIQLGMQDCQTPEVRQTDSPLNSDGMDEETAKHSTASWQKEKYELEFGRRKEVVNVIYNIEDLTEDDQVTLINILVTYIQ

Query:  KTDCFLAVPEHARKR
        KT+CFLAVPEHARKR
Subjt:  KTDCFLAVPEHARKR

XP_038896380.1 uncharacterized protein LOC120084641 [Benincasa hispida]4.5e-4345.91Show/hide
Query:  FRPGHLQHLERILHEKVPGCALNQNTIECK------------------------------VEREIFNLWV-----------QSFPHYDDLSTIFGKDRAI
        FR G+LQ+LERILHEKVPGCALNQNTIECK                              VE+EIF+LWV           +SF HYDDLST+FGKDRA 
Subjt:  FRPGHLQHLERILHEKVPGCALNQNTIECK------------------------------VEREIFNLWV-----------QSFPHYDDLSTIFGKDRAI

Query:  GQSSEDPHVMVSNAFREFEDEIQLGMQDCQTPEVRQTDSPLNSDGMDEETAKHST------------------------------------------ASW
                                   +C TPEV Q +SPLN D +DEE A+ ST                                          ASW
Subjt:  GQSSEDPHVMVSNAFREFEDEIQLGMQDCQTPEVRQTDSPLNSDGMDEETAKHST------------------------------------------ASW

Query:  QKEKYELEFGRRKEVVNVIYNIEDLTEDDQVTLINILVTYIQKTDCFLAVPEHARKR
        QKEKYELEFGRRKEVVN IY+I+ L EDDQVT I++LVT IQKTDCFLAVPEHARKR
Subjt:  QKEKYELEFGRRKEVVNVIYNIEDLTEDDQVTLINILVTYIQKTDCFLAVPEHARKR

XP_038902479.1 uncharacterized protein At2g29880-like [Benincasa hispida]3.2e-4160Show/hide
Query:  FRPGHLQHLERILHEKVPGCALNQNTIECK------------------------------VEREIFNLWVQS-----------FPHYDDLSTIFGKDRAI
        FRPG+LQHLERILHEKVPGC LNQNTIECK                              VEREIF+LWV S           FPHYDD ST+FGKDR +
Subjt:  FRPGHLQHLERILHEKVPGCALNQNTIECK------------------------------VEREIFNLWVQS-----------FPHYDDLSTIFGKDRAI

Query:  GQSSEDPHVMVSNAFREFEDEIQLGMQDCQTPEVRQTDSPLNSDGMDEETAKHST
        G+SSEDP+VM +NAFREFEDEI+LG QDCQTPEVRQT+SPLN D +DEE A+ ST
Subjt:  GQSSEDPHVMVSNAFREFEDEIQLGMQDCQTPEVRQTDSPLNSDGMDEETAKHST

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859533.5e-0926.29Show/hide
Query:  FRPGHLQHLERILHEKVPGCALNQ-NTIECKV--------------------------------EREIFNLWV-----------QSFPHYDDLSTIFGKD
        F+PG+L  L+R++ EK+PG  + + +TI+C V                                ER++F+ W+           +SFP+YDDLS +FGKD
Subjt:  FRPGHLQHLERILHEKVPGCALNQ-NTIECKV--------------------------------EREIFNLWV-----------QSFPHYDDLSTIFGKD

Query:  RAIGQSSEDPHVMVSNAFREFEDEIQLG-MQDCQTPEVRQTDSPLNSDGM-------------------------DEETAK-------------HSTASW
        RA G  SE    + SN    F D I LG   D   P +      ++ D M                           ET +              + A W
Subjt:  RAIGQSSEDPHVMVSNAFREFEDEIQLG-MQDCQTPEVRQTDSPLNSDGM-------------------------DEETAK-------------HSTASW

Query:  QKEKYELEFGRRKEVVNVIYNIEDLTEDDQVTLINILVTYIQKTDCFLAVP
         KEK  +E   R +VV  + +I  L   D+  L+ IL   ++  + FL++P
Subjt:  QKEKYELEFGRRKEVVNVIYNIEDLTEDDQVTLINILVTYIQKTDCFLAVP

A0A2N9GFX2 Uncharacterized protein1.2e-0949.35Show/hide
Query:  FRPGHLQHLERILHEKVPGCALN-QNTIECKVEREIFNLWVQSFPHYDDLSTIFGKDRAIGQSSEDPHVMVSNAFRE
        F+ G+L  LER++ EK+ GC L  Q  IE +V   +  L  +SFPHYDDL+ +FGKDRAIG S+E P  M     RE
Subjt:  FRPGHLQHLERILHEKVPGCALN-QNTIECKVEREIFNLWVQSFPHYDDLSTIFGKDRAIGQSSEDPHVMVSNAFRE

A0A5A7U0H7 Retrotransposon protein3.5e-0926.29Show/hide
Query:  FRPGHLQHLERILHEKVPGCALNQ-NTIECKV--------------------------------EREIFNLWV-----------QSFPHYDDLSTIFGKD
        F+PG+L  L+R++ EK+PG  + + +TI+C V                                ER++F+ W+           +SFP+YDDLS +FGKD
Subjt:  FRPGHLQHLERILHEKVPGCALNQ-NTIECKV--------------------------------EREIFNLWV-----------QSFPHYDDLSTIFGKD

Query:  RAIGQSSEDPHVMVSNAFREFEDEIQLG-MQDCQTPEVRQTDSPLNSDGM-------------------------DEETAK-------------HSTASW
        RA G  SE    + SN    F D I LG   D   P +      ++ D M                           ET +              + A W
Subjt:  RAIGQSSEDPHVMVSNAFREFEDEIQLG-MQDCQTPEVRQTDSPLNSDGM-------------------------DEETAK-------------HSTASW

Query:  QKEKYELEFGRRKEVVNVIYNIEDLTEDDQVTLINILVTYIQKTDCFLAVP
         KEK  +E   R +VV  + +I  L   D+  L+ IL   ++  + FL++P
Subjt:  QKEKYELEFGRRKEVVNVIYNIEDLTEDDQVTLINILVTYIQKTDCFLAVP

A0A5D3BZU3 Retrotransposon protein6.6e-0828.85Show/hide
Query:  FRPGHLQHLERILHEKVPGCALNQN-TIECKVEREIFNLWVQSFPHYDDLSTIFGKDRAIGQSSEDPHVMVSNAFREFEDEIQLG---MQDCQTPEVRQT
        FR G+L  L+R++ EK+P   +  + TI+C+       L  +SFP+YDDLS +FG D A G  SE      SN    F D + LG    QD  T   +  
Subjt:  FRPGHLQHLERILHEKVPGCALNQN-TIECKVEREIFNLWVQSFPHYDDLSTIFGKDRAIGQSSEDPHVMVSNAFREFEDEIQLG---MQDCQTPEVRQT

Query:  DSPLNS-----DGMDEETAKHSTAS-------------------------------WQKEKYELEFGRRKEVVNVIYNIEDLTEDDQVTLINILVTYIQK
           L+       G   E   +S+ S                               W KEK   E   R EVV  + +I  L   D+  L+ IL   ++ 
Subjt:  DSPLNS-----DGMDEETAKHSTAS-------------------------------WQKEKYELEFGRRKEVVNVIYNIEDLTEDDQVTLINILVTYIQK

Query:  TDCFLAVP
         + FL++P
Subjt:  TDCFLAVP

A0A5D3D7X4 Retrotransposon protein1.6e-0928.12Show/hide
Query:  FRPGHLQHLERILHEKVPGCALNQNTIECKV--------------------------------EREIFNLWVQSFP-----------HYDDLSTIFGKDR
        FRPG+L  L R+   K+PGC ++ +TI+ ++                                E+E+F+ WV+S P           HYD LS +FGKDR
Subjt:  FRPGHLQHLERILHEKVPGCALNQNTIECKV--------------------------------EREIFNLWVQSFP-----------HYDDLSTIFGKDR

Query:  AIGQSSEDPHVMVSNAFREFEDEIQLGMQDCQTPEVRQTDSP---------LNSDGMDEETAKHSTASWQKEKYELEFGRRKEVVNVIYNIEDLTEDDQV
        A G  +E        +F +       G     T  V  TD P         L+ D M   TA+H  AS            R+EVV  +  I +LT  D+ 
Subjt:  AIGQSSEDPHVMVSNAFREFEDEIQLGMQDCQTPEVRQTDSP---------LNSDGMDEETAKHSTASWQKEKYELEFGRRKEVVNVIYNIEDLTEDDQV

Query:  TLINILVTYIQKTDCFLAVPEHAR
         L+ IL+  +     FL VP++ +
Subjt:  TLINILVTYIQKTDCFLAVPEHAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCGACCTGGACACTTGCAGCACCTGGAGCGAATTCTGCATGAAAAGGTGCCTGGGTGCGCACTTAATCAAAACACCATCGAGTGCAAGGTCGAGAGGGAGATTTT
CAATCTTTGGGTTCAGTCGTTCCCCCATTACGATGACCTCTCCACCATCTTTGGGAAGGATAGAGCTATAGGGCAATCAAGTGAGGACCCACACGTGATGGTGAGTAATG
CATTTAGAGAGTTTGAAGATGAGATTCAACTTGGAATGCAGGACTGTCAGACACCTGAGGTTCGCCAAACAGATTCACCGTTAAATTCGGATGGAATGGATGAAGAGACA
GCAAAGCATTCTACAGCATCGTGGCAGAAGGAGAAGTATGAGCTGGAGTTCGGTCGTCGGAAGGAAGTAGTAAATGTCATATACAACATTGAAGACTTGACTGAGGATGA
CCAGGTGACCCTTATTAACATACTTGTCACATACATTCAGAAGACAGATTGCTTCCTTGCAGTACCAGAACACGCACGGAAAAGACTGAATGCCATGAAGATATACTTAA
AGTATGGCTCTTCTACTTCAACCTCAAAGATCGTGCCCAAATTTTCAAGTTTCAATGTCTCGCCATATGCATTAAGAAGAGCATATGATCCTTCTGACAATCCTCGTACG
AACACTAATGTGTACTCTCTTGCGCGGTCAATGTGTGTTGTTTTGCTTGCTAAAGTTGTTTTAGACTTTAATCGCTTGCTTGGCTCCTATCTTTGGAGAGGGAAGTTGGA
AAGTGTTGTGGGACTAAGGTTGCTTAGTCGGATGTTTGTCTTCCGTGTAGTGAGGGTGATCTTGAAGTTCATCATATTCCTTCTTGAAATGTTGTTGCGGCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCGACCTGGACACTTGCAGCACCTGGAGCGAATTCTGCATGAAAAGGTGCCTGGGTGCGCACTTAATCAAAACACCATCGAGTGCAAGGTCGAGAGGGAGATTTT
CAATCTTTGGGTTCAGTCGTTCCCCCATTACGATGACCTCTCCACCATCTTTGGGAAGGATAGAGCTATAGGGCAATCAAGTGAGGACCCACACGTGATGGTGAGTAATG
CATTTAGAGAGTTTGAAGATGAGATTCAACTTGGAATGCAGGACTGTCAGACACCTGAGGTTCGCCAAACAGATTCACCGTTAAATTCGGATGGAATGGATGAAGAGACA
GCAAAGCATTCTACAGCATCGTGGCAGAAGGAGAAGTATGAGCTGGAGTTCGGTCGTCGGAAGGAAGTAGTAAATGTCATATACAACATTGAAGACTTGACTGAGGATGA
CCAGGTGACCCTTATTAACATACTTGTCACATACATTCAGAAGACAGATTGCTTCCTTGCAGTACCAGAACACGCACGGAAAAGACTGAATGCCATGAAGATATACTTAA
AGTATGGCTCTTCTACTTCAACCTCAAAGATCGTGCCCAAATTTTCAAGTTTCAATGTCTCGCCATATGCATTAAGAAGAGCATATGATCCTTCTGACAATCCTCGTACG
AACACTAATGTGTACTCTCTTGCGCGGTCAATGTGTGTTGTTTTGCTTGCTAAAGTTGTTTTAGACTTTAATCGCTTGCTTGGCTCCTATCTTTGGAGAGGGAAGTTGGA
AAGTGTTGTGGGACTAAGGTTGCTTAGTCGGATGTTTGTCTTCCGTGTAGTGAGGGTGATCTTGAAGTTCATCATATTCCTTCTTGAAATGTTGTTGCGGCCATGA
Protein sequenceShow/hide protein sequence
MFRPGHLQHLERILHEKVPGCALNQNTIECKVEREIFNLWVQSFPHYDDLSTIFGKDRAIGQSSEDPHVMVSNAFREFEDEIQLGMQDCQTPEVRQTDSPLNSDGMDEET
AKHSTASWQKEKYELEFGRRKEVVNVIYNIEDLTEDDQVTLINILVTYIQKTDCFLAVPEHARKRLNAMKIYLKYGSSTSTSKIVPKFSSFNVSPYALRRAYDPSDNPRT
NTNVYSLARSMCVVLLAKVVLDFNRLLGSYLWRGKLESVVGLRLLSRMFVFRVVRVILKFIIFLLEMLLRP