; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG11G016330 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG11G016330
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionBiogenesis of lysosome-related organelles complex 1 subunit 7
Genome locationCG_Chr11:29609183..29616948
RNA-Seq ExpressionClCG11G016330
SyntenyClCG11G016330
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0031083 - BLOC-1 complex (cellular component)
InterPro domainsIPR017246 - Snapin
IPR028119 - Snapin/Pallidin/Snn1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144641.1 uncharacterized protein LOC101218072 [Cucumis sativus]7.7e-6490.2Show/hide
Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSIADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP
        MHSPEKLD DYSA  DSNVSAELETSI+ NGDLQEGND ENKN+GNSNALANGLSSMLINIIRDFDS ADDTL SQ+ LSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSIADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ
        FIMQHASRISNVRKRVLSLNSILRTIQRR+DNIDRAI+MGNLPDTRSS +SSQ
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ

XP_008444284.1 PREDICTED: uncharacterized protein LOC103487651 [Cucumis melo]3.1e-6592.16Show/hide
Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSIADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP
        MH PEKLD DYSA  DSNVSAELETSISP GDLQEGNDGENKN+GNSNALANGLSSMLINIIRDFDS ADDTL SQ+ LSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSIADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAI+MGNLPDTRSS NSSQ
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ

XP_038897515.1 uncharacterized protein LOC120085558 isoform X1 [Benincasa hispida]1.5e-6293.06Show/hide
Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSIADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP
        MHSPEKLDGDYSA  +SNV +ELETSISPNGDLQEGND ENKN+GNSNALANGLSSMLINIIRDFDS ADDTL SQSQLSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSIADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPD
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP+
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPD

XP_038897517.1 uncharacterized protein LOC120085558 isoform X2 [Benincasa hispida]5.0e-6393.75Show/hide
Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSIADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP
        MHSPEKLDGDYSA  +SNV +ELETSISPNGDLQEGND ENKN+GNSNALANGLSSMLINIIRDFDS ADDTL SQSQLSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSIADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPD
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPD
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPD

XP_038897521.1 uncharacterized protein LOC120085558 isoform X5 [Benincasa hispida]5.0e-6393.75Show/hide
Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSIADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP
        MHSPEKLDGDYSA  +SNV +ELETSISPNGDLQEGND ENKN+GNSNALANGLSSMLINIIRDFDS ADDTL SQSQLSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSIADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPD
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPD
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPD

TrEMBL top hitse value%identityAlignment
A0A1S3BAU4 Biogenesis of lysosome-related organelles complex 1 subunit 71.5e-6592.16Show/hide
Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSIADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP
        MH PEKLD DYSA  DSNVSAELETSISP GDLQEGNDGENKN+GNSNALANGLSSMLINIIRDFDS ADDTL SQ+ LSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSIADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAI+MGNLPDTRSS NSSQ
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ

A0A6J1F9C2 Biogenesis of lysosome-related organelles complex 1 subunit 72.4e-5078.12Show/hide
Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSIADDTLTSQSQLSSSLDRLT-------TELDQL
        MHSPEK+  D  A  DS+VS ELETSIS NGDL+E ND  N N+ NSNALANGLSSMLINIIRDFDS ADDTL SQSQLSSSLDR+T       TELDQL
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSIADDTLTSQSQLSSSLDRLT-------TELDQL

Query:  LEDAPFPFIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ
        LE APFPFIMQHASRIS+VRKRVLSLNSIL +IQRR+DNIDRAISMGN PDT SSQ+SSQ
Subjt:  LEDAPFPFIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ

A0A6J1FEP4 Biogenesis of lysosome-related organelles complex 1 subunit 71.9e-5281.7Show/hide
Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSIADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP
        MHSPEK+  D  A  DS+VS ELETSIS NGDL+E ND  N N+ NSNALANGLSSMLINIIRDFDS ADDTL SQSQLSSSLDR+TTELDQLLE APFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSIADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ
        FIMQHASRIS+VRKRVLSLNSIL +IQRR+DNIDRAISMGN PDT SSQ+SSQ
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ

A0A6J1FIR1 Biogenesis of lysosome-related organelles complex 1 subunit 71.9e-5279.74Show/hide
Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSIADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP
        MHS EK+  D SA  DS VSAELE SISPNGD++E ND  N N+G+SNALANGLSSML+NI+RDFDS ADDTL SQSQLS SLDRLT+ELDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSIADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ
        FIMQHA RIS+VRKRVLSLNSILR++QRRVDNIDR ISM NLPD RSSQ+SSQ
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ

A0A6J1IKP2 Biogenesis of lysosome-related organelles complex 1 subunit 71.9e-5281.05Show/hide
Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSIADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP
        MHSPEK+  D  A  DS+ S ELETSIS NG+L+E ND  N N+ NSNALANGLSSMLINIIRDFDS ADDTL SQSQLSSSLDR+TTELDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSIADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ
        FIMQHASRIS+VRKRVLSLNSILR+IQRR+DNIDRAISMGN PDT SSQ+ SQ
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G79070.1 SNARE-associated protein-related1.1e-2650.36Show/hide
Query:  ADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSIADDTLTSQSQLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRK
        +D   SA+  TS   +   ++G  G     G   A+A GLS+ML ++I+DFDS A DTL SQ +LS SLDRL  ELDQLLE+AP PFI+QHASRIS+V++
Subjt:  ADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSIADDTLTSQSQLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRK

Query:  RVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNS
        RV SLN +L+++QRR+DNID  +S     +  SS+ +
Subjt:  RVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCCTCAACGCCTCCTATCTTCAGCGCATACCACGACCAACTACACTACTGCCTTCAACGCATAGAAGCCACAGCTCATGACAATCTTACCAACACATGGGTCGG
ACGGTGTGCCCCTTCCCATGGGTTGAAGGTTCTATATAGTACTCGATATGCCATTTTGGCTCGGCATCGACTGGGCATGGACATAGGAGGATTCATGCCTAGATATTACC
CAGTTGACACGACATTTACCCGAGTTAACTCGGTAAGCATTATGATATCTTGGAAAGCCCCGAATTACGGAGGTTGTGTTGTTGAGGATCACAATGACGAAGAGAGTTGC
AAAGGAGGGAAGTCGAAGAGAGTCGTGAAGGAGGGAAGTCGCACGTACAAGGGACGGGTGGGGCCGAATGAAGTCATTAGGTTAGTTCGGTTAAGGAAAGAAGAACCTTG
CCTAAGGTGTGTTGCCGAATTTAGATTTAGGGAAAACTCAAGCGTTGGGTCGCCGGACTGTTCGCATCGCTCGCCGGAAGTCGAGAATCCGTGGGTGTCGGATTTTCTGT
GCCGTGTGGTTCACCGGAAGCTGCCACGCGTGATTCGCCGGGGGGAGTCCGTTCGCCGGGCGTTGCTGAGTTGTGGAGCTCGCTGGAGCGGTGAGAATTTGGCTGAGATG
CACAGTCCGGAGAAATTGGATGGCGATTATTCTGCCACCGCGGACAGCAACGTCTCGGCTGAATTGGAGACTTCCATTAGTCCCAATGGTGATCTCCAGGAAGGAAATGA
TGGTGAAAATAAGAACATAGGAAACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATCAACATCATAAGGGATTTCGACTCCATAGCTGATGATACTCTTACAA
GCCAGAGCCAGCTTTCATCTTCCCTCGATCGTCTTACTACAGAATTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGGATTTCTAAC
GTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAAGAACCATACAGCGAAGAGTGGATAACATAGATCGGGCAATCTCGATGGGCAATCTACCAGATACTCGTTCCTC
TCAAAATTCCTCCCAGCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCCTCAACGCCTCCTATCTTCAGCGCATACCACGACCAACTACACTACTGCCTTCAACGCATAGAAGCCACAGCTCATGACAATCTTACCAACACATGGGTCGG
ACGGTGTGCCCCTTCCCATGGGTTGAAGGTTCTATATAGTACTCGATATGCCATTTTGGCTCGGCATCGACTGGGCATGGACATAGGAGGATTCATGCCTAGATATTACC
CAGTTGACACGACATTTACCCGAGTTAACTCGGTAAGCATTATGATATCTTGGAAAGCCCCGAATTACGGAGGTTGTGTTGTTGAGGATCACAATGACGAAGAGAGTTGC
AAAGGAGGGAAGTCGAAGAGAGTCGTGAAGGAGGGAAGTCGCACGTACAAGGGACGGGTGGGGCCGAATGAAGTCATTAGGTTAGTTCGGTTAAGGAAAGAAGAACCTTG
CCTAAGGTGTGTTGCCGAATTTAGATTTAGGGAAAACTCAAGCGTTGGGTCGCCGGACTGTTCGCATCGCTCGCCGGAAGTCGAGAATCCGTGGGTGTCGGATTTTCTGT
GCCGTGTGGTTCACCGGAAGCTGCCACGCGTGATTCGCCGGGGGGAGTCCGTTCGCCGGGCGTTGCTGAGTTGTGGAGCTCGCTGGAGCGGTGAGAATTTGGCTGAGATG
CACAGTCCGGAGAAATTGGATGGCGATTATTCTGCCACCGCGGACAGCAACGTCTCGGCTGAATTGGAGACTTCCATTAGTCCCAATGGTGATCTCCAGGAAGGAAATGA
TGGTGAAAATAAGAACATAGGAAACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATCAACATCATAAGGGATTTCGACTCCATAGCTGATGATACTCTTACAA
GCCAGAGCCAGCTTTCATCTTCCCTCGATCGTCTTACTACAGAATTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGGATTTCTAAC
GTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAAGAACCATACAGCGAAGAGTGGATAACATAGATCGGGCAATCTCGATGGGCAATCTACCAGATACTCGTTCCTC
TCAAAATTCCTCCCAGCTTTAA
Protein sequenceShow/hide protein sequence
MAPSTPPIFSAYHDQLHYCLQRIEATAHDNLTNTWVGRCAPSHGLKVLYSTRYAILARHRLGMDIGGFMPRYYPVDTTFTRVNSVSIMISWKAPNYGGCVVEDHNDEESC
KGGKSKRVVKEGSRTYKGRVGPNEVIRLVRLRKEEPCLRCVAEFRFRENSSVGSPDCSHRSPEVENPWVSDFLCRVVHRKLPRVIRRGESVRRALLSCGARWSGENLAEM
HSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSIADDTLTSQSQLSSSLDRLTTELDQLLEDAPFPFIMQHASRISN
VRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQL