CuGenDBv2

Gene ID	ClCG11G016815
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	gamma aminobutyrate transaminase 1, mitochondrial
Genome location	CG_Chr11:30103236..30104749
RNA-Seq Expression	ClCG11G016815
Synteny	ClCG11G016815
Gene Ontology terms	GO:0009102 - biotin biosynthetic process (biological process) GO:0009448 - gamma-aminobutyric acid metabolic process (biological process) GO:0003867 - 4-aminobutyrate transaminase activity (molecular function) GO:0003992 - N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity (molecular function) GO:0004015 - adenosylmethionine-8-amino-7-oxononanoate transaminase activity (molecular function) GO:0030170 - pyridoxal phosphate binding (molecular function)
InterPro domains	IPR015421 - Pyridoxal phosphate-dependent transferase, major domain IPR015424 - Pyridoxal phosphate-dependent transferase

Homology

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GenBank top hits

e value

%identity

Alignment

EEF41338.1 aminobutyrate aminotransferase, putative [Ricinus communis]

1.7e-15

84.91

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Query:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLGI
        RLGTMFGCDKYNIKPDLVS+AK LSSAYMPI  V++SPEVS+VI SQSNKLGI
Subjt:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLGI

XP_015575910.1 gamma aminobutyrate transaminase 3, chloroplastic isoform X1 [Ricinus communis]

1.7e-15

84.91

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Query:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLGI
        RLGTMFGCDKYNIKPDLVS+AK LSSAYMPI  V++SPEVS+VI SQSNKLGI
Subjt:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLGI

XP_025013461.1 gamma aminobutyrate transaminase 1, mitochondrial isoform X2 [Ricinus communis]

1.7e-15

84.91

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Query:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLGI
        RLGTMFGCDKYNIKPDLVS+AK LSSAYMPI  V++SPEVS+VI SQSNKLGI
Subjt:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLGI

XP_041006781.1 LOW QUALITY PROTEIN: gamma aminobutyrate transaminase 3, chloroplastic [Juglans microcarpa x Juglans regia]

1.7e-15

86.79

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Query:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLGI
        RLGTMFGCDKYNIKPDLVS+AK LSSAYMPI  VL+SPEVS VI SQSNKLGI
Subjt:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLGI

XP_042519828.1 gamma aminobutyrate transaminase 3, chloroplastic [Macadamia integrifolia]

2.2e-15

86.54

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Query:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLG
        RLGTMFGCDKYNIKPDLVSIAK LSSAYMPI  VL+SPE+S+VI SQSNKLG
Subjt:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLG

TrEMBL top hits

e value

%identity

Alignment

A0A1S4AZB1 gamma aminobutyrate transaminase 1, mitochondrial isoform X2

1.8e-15

86.54

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Query:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLG
        RLGTMFGCDKYNIKPDLVS+AK LSSAYMPI  VL+SPEVS+VI SQSNKLG
Subjt:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLG

A0A2P2LLY2 POLLEN-PISTIL INTERACTION 2 family protein

1.1e-15

82.14

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Query:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLGILLM
        RLGTMFGCDKYNIKPDLVS+AK LSSAYMPI  V++SPEVS+VI SQSNKLG L M
Subjt:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLGILLM

A0A5J5A6S9 Uncharacterized protein

1.8e-15

88.46

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Query:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLG
        RLGTMFGCDKYNIKPDLVSIAK LSSAYMPI  VL+SPEVS+VI SQSNKLG
Subjt:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLG

A0A6J1JCZ3 gamma aminobutyrate transaminase 1, mitochondrial-like

1.8e-15

84.62

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Query:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLG
        R+GTMFGCDKYNIKPDLVS+AK LSSAYMPI  VLLSPE+S+VI SQSNKLG
Subjt:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLG

B9S4Y5 Aminobutyrate aminotransferase, putative

8.0e-16

84.91

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Query:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLGI
        RLGTMFGCDKYNIKPDLVS+AK LSSAYMPI  V++SPEVS+VI SQSNKLGI
Subjt:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLGI

SwissProt top hits

e value

%identity

Alignment

B8BBZ7 Probable gamma-aminobutyrate transaminase 3, mitochondrial

2.0e-16

78.85

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Query:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLG
        RLGTMFGCD Y+IKPDLVSIAK LSSAYMPI  +L+SPE+++VI SQSNKLG
Subjt:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLG

Q6ZCF0 Probable gamma-aminobutyrate transaminase 3, mitochondrial

2.0e-16

78.85

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Query:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLG
        RLGTMFGCD Y+IKPDLVSIAK LSSAYMPI  +L+SPE+++VI SQSNKLG
Subjt:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLG

Q84P52 Gamma aminobutyrate transaminase 3, chloroplastic

3.1e-17

82.69

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Query:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLG
        RLGTMFGC+KYNIKPDLVS+AK LSS YMPI  VL+SPEVS+VI SQSNKLG
Subjt:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLG

Q84P53 Gamma aminobutyrate transaminase 2

1.3e-15

75.47

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Query:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLGI
        RLGTMFGCDKYNIKPDLVSIAK LS  Y+PI  VL+S E+S VI SQSN+LG+
Subjt:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLGI

Q84P54 Gamma aminobutyrate transaminase 1, mitochondrial

5.9e-16

80.77

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Query:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLG
        RLGTMFG D YNIKPDLV++AK LSSAYMPI  VL+SPEVS+VI SQSNKLG
Subjt:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLG

Arabidopsis top hits

e value

%identity

Alignment

AT3G22200.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

9.4e-17

73.58

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Query:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLGI
        RLGTMFGCDKYNIKPDLV++AK LSSAYMPI  +L+S EV++VI S S+KLG+
Subjt:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLGI

AT3G22200.2 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

9.4e-17

73.58

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Query:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLGI
        RLGTMFGCDKYNIKPDLV++AK LSSAYMPI  +L+S EV++VI S S+KLG+
Subjt:  RLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLGI

Sequences

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CDS sequence

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ATGAAATGGGGAACGGGGATGGGGAGCGGAGAAGCCATCTACTGCCCACCCTGCCCCGTGGACATCTCTAGTCATGGGAGCAGGCTCGGGACGATGTTCGGGTGT
GATAAATACAATATCAAGCCAGACTTGGTATCGATAGCTAAGCCTCTTTCTTCTGCATATATGCCTATTAGTGTTGTGCTTCTTAGCCCTGAAGTTTCAAATGTC
ATACAGTCTCAAAGCAATAAGCTTGGTATATTACTTATGGCACAGGCAAAAATATTCTTGAAAGAACAAATTGATTGTCTTTTTATTCATGTAGTTTTTCCCACG
GATTTACATATTCTGGACATCCTATTGCATGTGCTGTGGCAATGGAAACGTTGA

mRNA sequence

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Protein sequence

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MKWGTGMGSGEAIYCPPCPVDISSHGSRLGTMFGCDKYNIKPDLVSIAKPLSSAYMPISVVLLSPEVSNVIQSQSNKLGILLMAQAKIFLKEQIDCLFIHVVFPT
DLHILDILLHVLWQWKR

ClCG11G016815 (gene) of Watermelon (Charleston Gray) v2.5 genome