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ClCG11G017860 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG11G017860
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRNA-directed DNA polymerase
Genome locationCG_Chr11:31019775..31020701
RNA-Seq ExpressionClCG11G017860
SyntenyClCG11G017860
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_027166343.1 uncharacterized protein LOC113766338 [Coffea eugenioides]3.6e-0459.52Show/hide
Query:  MLIKSVVYAIPTFVMGCFRLPTGFCKDIMRFCAEFWCYKGLR
        +LIK+V  A+PT+VM CFRLP G C+DI R  A+FW  KG R
Subjt:  MLIKSVVYAIPTFVMGCFRLPTGFCKDIMRFCAEFWCYKGLR

TrEMBL top hitse value%identityAlignment
A0A2N9J2A6 Reverse transcriptase domain-containing protein1.3e-0430.93Show/hide
Query:  MLIKSVVYAIPTFVMGCFRLPTGFCKDIMRFCAEFW---------------------------CYKGLRMSIGNRIPTHVFSYPWITRLSTFRPITP
        +LIK+V+ AIPT+ M CF+LP GFC +I      FW                             +GLR  +G+    H++   W+   ST+R I+P
Subjt:  MLIKSVVYAIPTFVMGCFRLPTGFCKDIMRFCAEFW---------------------------CYKGLRMSIGNRIPTHVFSYPWITRLSTFRPITP

A0A392M8T1 Putative ribonuclease H protein (Fragment)5.1e-0429.92Show/hide
Query:  LIKSVVYAIPTFVMGCFRLPTGFCKDIMRFCAEF-W---------CYKGLRMSIGNRIPTHVFSYPWITRLSTFRPITPNSSAYSVKSGYKV----AMLL
        LIK+V  AIP ++M C++LP G C++I  +   + W            G R SIGN    H+F   WI +    +   P +S YSV+S + +    A LL
Subjt:  LIKSVVYAIPTFVMGCFRLPTGFCKDIMRFCAEF-W---------CYKGLRMSIGNRIPTHVFSYPWITRLSTFRPITPNSSAYSVKSGYKV----AMLL

Query:  YKHSSTPSEDVVGTFMELKNPSEGTTF
         ++SS+    +      +  P     F
Subjt:  YKHSSTPSEDVVGTFMELKNPSEGTTF

A0A5A7Q480 RNA-directed DNA polymerase5.1e-0433.72Show/hide
Query:  MLIKSVVYAIPTFVMGCFRLPTGFCKDIMR----FC---AEFWCYK-----------GLRMSIGNRIPTHVFSYPWITRLSTFRPI
        +LIK+V+ ++P +VM  FRLP G C++I R    FC   ++ W +K           G+R  +GN     ++ YPWI   + F+P+
Subjt:  MLIKSVVYAIPTFVMGCFRLPTGFCKDIMR----FC---AEFWCYK-----------GLRMSIGNRIPTHVFSYPWITRLSTFRPI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAATTAAGAGCGTGGTTTATGCAATTCCTACGTTTGTGATGGGTTGTTTCAGGTTGCCTACAGGCTTTTGCAAGGACATTATGCGTTTCTGTGCTGAATTTTGGTG
CTACAAGGGACTCCGCATGAGCATTGGTAATCGAATACCCACGCATGTGTTCAGCTATCCTTGGATTACAAGGCTTTCTACTTTTCGTCCTATTACTCCGAATTCTAGTG
CGTATTCAGTTAAGAGCGGTTATAAGGTTGCTATGCTACTTTACAAACATTCCTCTACCCCTAGTGAGGATGTGGTGGGAACGTTTATGGAGCTCAAAAATCCCTCCGAA
GGTACAACATTTTGTTTGGAAAACTGTTGGAAATTGCTTGCTGTTTTAATATTTAGTAGGCACATTGAGATTCATCTTATTGTCCAGTGTGTGGACGTTCCATGGAAACA
ACAGTGCATGCTTTGTTTGGTTGCTATTGAGCCCAACAAAACCATTCTTCCTGTTTTGAAACATTTAAATATTGATTCTTTTGATAGTTTCCAATGGGTTGATAGTTTCC
AATGGGCTGAGTTGTTTATGTCCTTTTGCCTAATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTAATTAAGAGCGTGGTTTATGCAATTCCTACGTTTGTGATGGGTTGTTTCAGGTTGCCTACAGGCTTTTGCAAGGACATTATGCGTTTCTGTGCTGAATTTTGGTG
CTACAAGGGACTCCGCATGAGCATTGGTAATCGAATACCCACGCATGTGTTCAGCTATCCTTGGATTACAAGGCTTTCTACTTTTCGTCCTATTACTCCGAATTCTAGTG
CGTATTCAGTTAAGAGCGGTTATAAGGTTGCTATGCTACTTTACAAACATTCCTCTACCCCTAGTGAGGATGTGGTGGGAACGTTTATGGAGCTCAAAAATCCCTCCGAA
GGTACAACATTTTGTTTGGAAAACTGTTGGAAATTGCTTGCTGTTTTAATATTTAGTAGGCACATTGAGATTCATCTTATTGTCCAGTGTGTGGACGTTCCATGGAAACA
ACAGTGCATGCTTTGTTTGGTTGCTATTGAGCCCAACAAAACCATTCTTCCTGTTTTGAAACATTTAAATATTGATTCTTTTGATAGTTTCCAATGGGTTGATAGTTTCC
AATGGGCTGAGTTGTTTATGTCCTTTTGCCTAATCTGA
Protein sequenceShow/hide protein sequence
MLIKSVVYAIPTFVMGCFRLPTGFCKDIMRFCAEFWCYKGLRMSIGNRIPTHVFSYPWITRLSTFRPITPNSSAYSVKSGYKVAMLLYKHSSTPSEDVVGTFMELKNPSE
GTTFCLENCWKLLAVLIFSRHIEIHLIVQCVDVPWKQQCMLCLVAIEPNKTILPVLKHLNIDSFDSFQWVDSFQWAELFMSFCLI