; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cla97C01G012020 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C01G012020
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionRING-H2 finger protein ATL56-like
Genome locationCla97Chr01:24831512..24831913
RNA-Seq ExpressionCla97C01G012020
SyntenyCla97C01G012020
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8124192.1 hypothetical protein FH972_019098 [Carpinus fangiana]2.1e-3258.78Show/hide
Query:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKMRD---LEMECVVCLENFKNGERCRLLPNCNHSF
        ME+VVS VLL VGI VLV+IH+CI GRA RG    I  +N     + G KR S  DLE+LPC++YK  +     ++C VCL+NFK G++CRLLPNC HSF
Subjt:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKMRD---LEMECVVCLENFKNGERCRLLPNCNHSF

Query:  HVQCIDSWLLNRPICPICRTFAAALPKISLI
        HVQCIDSWLL  PICPICRT     PKI +I
Subjt:  HVQCIDSWLLNRPICPICRTFAAALPKISLI

KCW49298.1 hypothetical protein EUGRSUZ_K02856 [Eucalyptus grandis]1.2e-3264.23Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEY----KMRDLEMECVVCLENFKNGERCRLLPNCN
        MVMEI++S VLL +GIAVLVVIHVCIVGRA R EG G  R     NSN    + S EDL+KLPC+EY    K  D + +C VCLENFK GE+CRLLPNC 
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEY----KMRDLEMECVVCLENFKNGERCRLLPNCN

Query:  HSFHVQCIDSWLLNRPICPICRT
        H FH QCIDSWLL   ICP+CRT
Subjt:  HSFHVQCIDSWLLNRPICPICRT

XP_018720505.1 RING-H2 finger protein ATL74 [Eucalyptus grandis]1.2e-3264.23Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEY----KMRDLEMECVVCLENFKNGERCRLLPNCN
        MVMEI++S VLL +GIAVLVVIHVCIVGRA R EG G  R     NSN    + S EDL+KLPC+EY    K  D + +C VCLENFK GE+CRLLPNC 
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEY----KMRDLEMECVVCLENFKNGERCRLLPNCN

Query:  HSFHVQCIDSWLLNRPICPICRT
        H FH QCIDSWLL   ICP+CRT
Subjt:  HSFHVQCIDSWLLNRPICPICRT

XP_022954431.1 RING-H2 finger protein ATL56-like [Cucurbita moschata]7.3e-4169.85Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECVVCLENFKNGERCRLLPN
        MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA RGE EGIWRSN         K  S +DLEKLPCYEYK  +      +++ECVVCLE FK GERCRLLPN
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECVVCLENFKNGERCRLLPN

Query:  CNHSFHVQCIDSWLLNRPICPICRTFAAALPKISLI
        C HSFHV+CIDSWLL  PICPICRT  A +PK  L+
Subjt:  CNHSFHVQCIDSWLLNRPICPICRTFAAALPKISLI

XP_022994122.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]2.5e-4170.59Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECVVCLENFKNGERCRLLPN
        MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA RGE EGIWRSN         K  S +DLEKLPCYEYK  +      +++ECVVCLE FK GERCRLLPN
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECVVCLENFKNGERCRLLPN

Query:  CNHSFHVQCIDSWLLNRPICPICRTFAAALPKISLI
        C HSFHV+CIDSWLL  PICPICRT  AA+PK  L+
Subjt:  CNHSFHVQCIDSWLLNRPICPICRTFAAALPKISLI

TrEMBL top hitse value%identityAlignment
A0A059A647 RING-type domain-containing protein6.0e-3364.23Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEY----KMRDLEMECVVCLENFKNGERCRLLPNCN
        MVMEI++S VLL +GIAVLVVIHVCIVGRA R EG G  R     NSN    + S EDL+KLPC+EY    K  D + +C VCLENFK GE+CRLLPNC 
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEY----KMRDLEMECVVCLENFKNGERCRLLPNCN

Query:  HSFHVQCIDSWLLNRPICPICRT
        H FH QCIDSWLL   ICP+CRT
Subjt:  HSFHVQCIDSWLLNRPICPICRT

A0A5N6RPJ5 RING-type domain-containing protein1.0e-3258.78Show/hide
Query:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKMRD---LEMECVVCLENFKNGERCRLLPNCNHSF
        ME+VVS VLL VGI VLV+IH+CI GRA RG    I  +N     + G KR S  DLE+LPC++YK  +     ++C VCL+NFK G++CRLLPNC HSF
Subjt:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKMRD---LEMECVVCLENFKNGERCRLLPNCNHSF

Query:  HVQCIDSWLLNRPICPICRTFAAALPKISLI
        HVQCIDSWLL  PICPICRT     PKI +I
Subjt:  HVQCIDSWLLNRPICPICRTFAAALPKISLI

A0A6J1GQW8 RING-H2 finger protein ATL56-like3.5e-4169.85Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECVVCLENFKNGERCRLLPN
        MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA RGE EGIWRSN         K  S +DLEKLPCYEYK  +      +++ECVVCLE FK GERCRLLPN
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECVVCLENFKNGERCRLLPN

Query:  CNHSFHVQCIDSWLLNRPICPICRTFAAALPKISLI
        C HSFHV+CIDSWLL  PICPICRT  A +PK  L+
Subjt:  CNHSFHVQCIDSWLLNRPICPICRTFAAALPKISLI

A0A6J1JUU5 RING-H2 finger protein ATL56-like1.2e-4170.59Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECVVCLENFKNGERCRLLPN
        MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA RGE EGIWRSN         K  S +DLEKLPCYEYK  +      +++ECVVCLE FK GERCRLLPN
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKMRD------LEMECVVCLENFKNGERCRLLPN

Query:  CNHSFHVQCIDSWLLNRPICPICRTFAAALPKISLI
        C HSFHV+CIDSWLL  PICPICRT  AA+PK  L+
Subjt:  CNHSFHVQCIDSWLLNRPICPICRTFAAALPKISLI

W9RES1 RING-H2 finger protein ATL808.7e-3259.35Show/hide
Query:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKMRDLE----MECVVCLENFKNGERCRLLPNCNHS
        MEIV+S +LL VGIAVLVVIH+CIVGRA     +G   +N+N N     KR S EDL+ +PC++Y M   +    ++C VCLENFK G++CRLLP+CNHS
Subjt:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKMRDLE----MECVVCLENFKNGERCRLLPNCNHS

Query:  FHVQCIDSWLLNRPICPICRTFA
        FH QCIDSWLL  P+CPICRT A
Subjt:  FHVQCIDSWLLNRPICPICRTFA

SwissProt top hitse value%identityAlignment
Q6NML0 E3 ubiquitin-protein ligase ATL761.1e-1244.58Show/hide
Query:  SNSNGNSNYGMKRFSKEDLEKLPCYEYKMRDLEM-----ECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICR
        S    +SN G+K   K+ L   P   Y  R++ +     ECV+CL +F +GE+ RLLP CNH FHV+CID WL +   CP CR
Subjt:  SNSNGNSNYGMKRFSKEDLEKLPCYEYKMRDLEM-----ECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICR

Q940Q4 RING-H2 finger protein ATL135.7e-1241.54Show/hide
Query:  LEKLPCYEYK----MRDLEMECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICRT
        ++ LP + YK    +++   +C VCL  F+  ++ RLLP C+H+FH+ CID+WLL+   CP+CR+
Subjt:  LEKLPCYEYK----MRDLEMECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICRT

Q9FLC6 RING-H2 finger protein ATL733.3e-1243.04Show/hide
Query:  NSNGNSNYGMKRFSKEDLEKLP--CYEYKMRDLEMECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICR
        ++N N   G+K   K  L+ +P   Y  +++    EC++CL +F  GE  R+LP CNH FHV+CID+WLL+   CP CR
Subjt:  NSNGNSNYGMKRFSKEDLEKLP--CYEYKMRDLEMECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICR

Q9LF64 RING-H2 finger protein ATL524.3e-1236.08Show/hide
Query:  LRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKMRDLEM---ECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICRTFAAAL
        L   GEG + S    ++N      ++  ++ +  Y+YK  D  +   +C VCL  F+  E  RLLP CNH+FH+ CID+WL +   CP+CR F   +
Subjt:  LRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKMRDLEM---ECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICRTFAAAL

Q9SRQ8 RING-H2 finger protein ATL516.7e-1334.58Show/hide
Query:  EGIWRSNSNGNSN-------YGMKRFSKEDLEKLPCYEYKMRDLEME---CVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICRTFAAALP
        +G   +N+NG +N        G     +  ++ +  Y+Y+  D  +E   C VCL  F+  E  RLLP CNH+FHV CID+WL +   CP+CR F     
Subjt:  EGIWRSNSNGNSN-------YGMKRFSKEDLEKLPCYEYKMRDLEME---CVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICRTFAAALP

Query:  KISLIQL
         + ++ L
Subjt:  KISLIQL

Arabidopsis top hitse value%identityAlignment
AT1G49210.1 RING/U-box superfamily protein8.1e-1444.58Show/hide
Query:  SNSNGNSNYGMKRFSKEDLEKLPCYEYKMRDLEM-----ECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICR
        S    +SN G+K   K+ L   P   Y  R++ +     ECV+CL +F +GE+ RLLP CNH FHV+CID WL +   CP CR
Subjt:  SNSNGNSNYGMKRFSKEDLEKLPCYEYKMRDLEM-----ECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICR

AT3G03550.1 RING/U-box superfamily protein4.8e-1434.58Show/hide
Query:  EGIWRSNSNGNSN-------YGMKRFSKEDLEKLPCYEYKMRDLEME---CVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICRTFAAALP
        +G   +N+NG +N        G     +  ++ +  Y+Y+  D  +E   C VCL  F+  E  RLLP CNH+FHV CID+WL +   CP+CR F     
Subjt:  EGIWRSNSNGNSN-------YGMKRFSKEDLEKLPCYEYKMRDLEME---CVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICRTFAAALP

Query:  KISLIQL
         + ++ L
Subjt:  KISLIQL

AT3G10910.1 RING/U-box superfamily protein4.0e-1335.77Show/hide
Query:  IVVSAVLLVVGIAVLVVIHV--CIVGRALRGEGEGIWRSNSNGNSNYG----MKRFSKEDLEKLPCYEYKMRDLEM---ECVVCLENFKNGERCRLLPNC
        +++ A LL   I  L +     C++    R   +    + SN N+N G         K+ L+++P   Y    ++M   EC++CL +F++GE+ R+LP C
Subjt:  IVVSAVLLVVGIAVLVVIHV--CIVGRALRGEGEGIWRSNSNGNSNYG----MKRFSKEDLEKLPCYEYKMRDLEM---ECVVCLENFKNGERCRLLPNC

Query:  NHSFHVQCIDSWLLNRPICPICR
        NH FHV+CID+WLL+R  CP CR
Subjt:  NHSFHVQCIDSWLLNRPICPICR

AT5G05280.1 RING/U-box superfamily protein2.4e-1343.04Show/hide
Query:  NSNGNSNYGMKRFSKEDLEKLP--CYEYKMRDLEMECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICR
        ++N N   G+K   K  L+ +P   Y  +++    EC++CL +F  GE  R+LP CNH FHV+CID+WLL+   CP CR
Subjt:  NSNGNSNYGMKRFSKEDLEKLP--CYEYKMRDLEMECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICR

AT5G17600.1 RING/U-box superfamily protein3.1e-1336.08Show/hide
Query:  LRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKMRDLEM---ECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICRTFAAAL
        L   GEG + S    ++N      ++  ++ +  Y+YK  D  +   +C VCL  F+  E  RLLP CNH+FH+ CID+WL +   CP+CR F   +
Subjt:  LRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKMRDLEM---ECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLNRPICPICRTFAAAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTATGGAGATTGTTGTATCAGCTGTTCTTTTGGTGGTGGGGATAGCTGTTTTGGTAGTGATTCATGTGTGTATTGTTGGGAGAGCTTTGAGAGGAGAAGGGGAAGG
AATTTGGAGAAGCAATAGTAATGGTAATAGTAATTATGGGATGAAGAGATTTTCAAAGGAGGATTTGGAGAAACTTCCTTGTTATGAGTACAAAATGAGGGATTTGGAAA
TGGAATGTGTAGTTTGTTTGGAGAATTTCAAAAATGGGGAAAGATGCAGATTGTTGCCTAATTGTAATCATAGTTTTCATGTCCAATGTATAGATTCTTGGCTTTTGAAC
AGACCCATTTGCCCAATTTGTAGAACTTTTGCTGCTGCTCTTCCTAAAATTTCACTGATTCAATTGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTATGGAGATTGTTGTATCAGCTGTTCTTTTGGTGGTGGGGATAGCTGTTTTGGTAGTGATTCATGTGTGTATTGTTGGGAGAGCTTTGAGAGGAGAAGGGGAAGG
AATTTGGAGAAGCAATAGTAATGGTAATAGTAATTATGGGATGAAGAGATTTTCAAAGGAGGATTTGGAGAAACTTCCTTGTTATGAGTACAAAATGAGGGATTTGGAAA
TGGAATGTGTAGTTTGTTTGGAGAATTTCAAAAATGGGGAAAGATGCAGATTGTTGCCTAATTGTAATCATAGTTTTCATGTCCAATGTATAGATTCTTGGCTTTTGAAC
AGACCCATTTGCCCAATTTGTAGAACTTTTGCTGCTGCTCTTCCTAAAATTTCACTGATTCAATTGAATTGA
Protein sequenceShow/hide protein sequence
MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRGEGEGIWRSNSNGNSNYGMKRFSKEDLEKLPCYEYKMRDLEMECVVCLENFKNGERCRLLPNCNHSFHVQCIDSWLLN
RPICPICRTFAAALPKISLIQLN