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Cla97C02G026340 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C02G026340
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationCla97Chr02:131803..132054
RNA-Seq ExpressionCla97C02G026340
SyntenyCla97C02G026340
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
InterPro domainsIPR007120 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
IPR015712 - DNA-directed RNA polymerase, subunit 2
IPR037033 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AHM88854.1 RNA polymerase beta subunit, partial [Lagenaria siceraria]8.6e-2496.49Show/hide
Query:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG
        KVAGRHGNKGIVSKILPREDMPYLQNGRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Subjt:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG

AHM89856.1 RNA polymerase beta subunit [Lagenaria siceraria]8.6e-2496.49Show/hide
Query:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG
        KVAGRHGNKGIVSKILPREDMPYLQNGRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Subjt:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG

YP_009236272.1 RNA polymerase beta subunit [Gynostemma pentaphyllum]8.6e-2496.49Show/hide
Query:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG
        KVAGRHGNKGIVSKILPREDMPYLQNGRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Subjt:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG

YP_009752827.1 RNA polymerase subunit beta [Baijiania yunnanensis]8.6e-2496.49Show/hide
Query:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG
        KVAGRHGNKGIVSKILPREDMPYLQNGRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Subjt:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG

YP_009753166.1 RNA polymerase subunit beta [Trichosanthes truncata]8.6e-2496.49Show/hide
Query:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG
        KVAGRHGNKGIVSKILPREDMPYLQNGRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Subjt:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG

TrEMBL top hitse value%identityAlignment
A0A1S4ETZ9 DNA-directed RNA polymerase subunit beta4.2e-2496.49Show/hide
Query:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG
        KVAGRHGNKGIVSKILPREDMPYLQNGRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Subjt:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG

A0A1X9Q1B9 DNA-directed RNA polymerase subunit beta4.2e-2496.49Show/hide
Query:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG
        KVAGRHGNKGIVSKILPREDMPYLQNGRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Subjt:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG

A0A218KG28 DNA-directed RNA polymerase subunit beta4.2e-2496.49Show/hide
Query:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG
        KVAGRHGNKGIVSKILPREDMPYLQNGRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Subjt:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG

A0A249RZI0 DNA-directed RNA polymerase subunit beta4.2e-2496.49Show/hide
Query:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG
        KVAGRHGNKGIVSKILPREDMPYLQNGRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Subjt:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG

A0A6H0ETN6 DNA-directed RNA polymerase subunit beta4.2e-2496.49Show/hide
Query:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG
        KVAGRHGNKGIVSKILPREDMPYLQNGRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Subjt:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG

SwissProt top hitse value%identityAlignment
A4QJA7 DNA-directed RNA polymerase subunit beta1.3e-2591.23Show/hide
Query:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG
        KVAGRHGNKGI+SKILPR+DMPYLQ+GRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Subjt:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG

A4QJJ1 DNA-directed RNA polymerase subunit beta1.3e-2591.23Show/hide
Query:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG
        KVAGRHGNKGI+SKILPR+DMPYLQ+GRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Subjt:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG

Q09MI6 DNA-directed RNA polymerase subunit beta9.6e-2692.98Show/hide
Query:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG
        KVAGRHGNKGIVSKILPR+DMPYLQ+GRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Subjt:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG

Q09X25 DNA-directed RNA polymerase subunit beta9.6e-2692.98Show/hide
Query:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG
        KVAGRHGNKGIVSKILPR+DMPYLQ+GRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Subjt:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG

Q4VZP1 DNA-directed RNA polymerase subunit beta1.1e-2696.49Show/hide
Query:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG
        KVAGRHGNKGIVSKILPREDMPYLQNGRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Subjt:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG

Arabidopsis top hitse value%identityAlignment
AT1G29940.1 nuclear RNA polymerase A23.3e-0540.38Show/hide
Query:  KVAGRHGNKGIVSKILPREDMPY--LQNGRPIDMVFNPLGVPSRMNVGQIFE
        K + RHG KG+ S++ P  DMP+  +   RP D++ NP   PSRM +  + E
Subjt:  KVAGRHGNKGIVSKILPREDMPY--LQNGRPIDMVFNPLGVPSRMNVGQIFE

AT3G18090.1 nuclear RNA polymerase D2B1.6e-0433.96Show/hide
Query:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSL
        K +  HG KG++  +  +++ P+   G   D+V NP   PSR   GQ+ E +L
Subjt:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSL

AT4G21710.1 DNA-directed RNA polymerase family protein2.9e-0944.64Show/hide
Query:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLV
        K + RHG KG V     +EDMP+   G   D++ NP  +PSRM +GQ+ EC +G V
Subjt:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLV

AT5G45140.1 nuclear RNA polymerase C22.1e-0744Show/hide
Query:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFE
        K + RHG KG+   I+ +ED P+ + G   D++ NP G PSRM VG++ E
Subjt:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFE

ATCG00190.1 RNA polymerase subunit beta8.9e-2791.23Show/hide
Query:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG
        KVAGRHGNKGI+SKILPR+DMPYLQ+GRP+DMVFNPLGVPSRMNVGQIFECSLGL G
Subjt:  KVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAAAGGTAGCGGGAAGACATGGAAATAAAGGTATTGTTTCAAAAATTTTGCCTAGAGAAGATATGCCTTATTTGCAAAATGGAAGACCTATTGATATGGTTTTCAA
TCCATTAGGAGTCCCCTCACGAATGAATGTAGGACAGATATTTGAGTGCTCACTCGGGTTAGTGGGATATACTTCTATCACAACATATATAAGTATTAGAAGTCTATCAC
ACGTAGCAATGAACGATATGTTTTGTGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATAAAGGTAGCGGGAAGACATGGAAATAAAGGTATTGTTTCAAAAATTTTGCCTAGAGAAGATATGCCTTATTTGCAAAATGGAAGACCTATTGATATGGTTTTCAA
TCCATTAGGAGTCCCCTCACGAATGAATGTAGGACAGATATTTGAGTGCTCACTCGGGTTAGTGGGATATACTTCTATCACAACATATATAAGTATTAGAAGTCTATCAC
ACGTAGCAATGAACGATATGTTTTGTGGTTAA
Protein sequenceShow/hide protein sequence
MIKVAGRHGNKGIVSKILPREDMPYLQNGRPIDMVFNPLGVPSRMNVGQIFECSLGLVGYTSITTYISIRSLSHVAMNDMFCG