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Cla97C02G031860 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C02G031860
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Descriptionprotein RADIALIS-like 3
Genome locationCla97Chr02:4820664..4822479
RNA-Seq ExpressionCla97C02G031860
SyntenyCla97C02G031860
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151090.1 protein RADIALIS-like 3 [Cucumis sativus]2.6e-4090.62Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERWQNIA AVG KSADEV+RHYE+LLEDLRRIESGRVPIPNYR   NRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ

XP_008447023.1 PREDICTED: protein RADIALIS-like 3 [Cucumis melo]9.0e-4190.62Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERWQNIA AVG KSADEV+RHYE+LLEDLR+IESGRVPIPNYRG  NRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ

XP_022975322.1 protein RADIALIS-like 3 [Cucurbita maxima]3.4e-4090.62Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ
        MASSSLKQQRPE TWTAKQNKLFEKALALYDKE PERW NIAMAVG KSADEVKRHYE+LLEDL+RIESGRVPIPNYRG  N DEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ

XP_023554816.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]2.4e-4192.71Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ
        MASSSLKQQRPE TWTAKQNKLFEKALALYDKETPERW NIAMAVG KSADEVKRHYE+LLEDLRRIESGRVPIPNYRG  N DEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ

XP_038888995.1 protein RADIALIS-like 3 isoform X1 [Benincasa hispida]5.1e-4496.88Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERW NIAMAVG KS DEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ

TrEMBL top hitse value%identityAlignment
A0A0A0K2A2 SANT domain-containing protein1.3e-4090.62Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERWQNIA AVG KSADEV+RHYE+LLEDLRRIESGRVPIPNYR   NRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ

A0A1S3BHB0 protein RADIALIS-like 34.4e-4190.62Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERWQNIA AVG KSADEV+RHYE+LLEDLR+IESGRVPIPNYRG  NRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ

A0A6J1C2H2 protein RADIALIS-like 33.1e-3987Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYR----GGGNRDEELRLLKYLKLQ
        MASSSLKQQRPE TWTAKQNKLFEKALALYDKETPERWQNIA AVG KSADEVKRHY++LLEDLRRIESGRVPIPNYR      GN DEELRLLKYLKL+
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYR----GGGNRDEELRLLKYLKLQ

A0A6J1GKW1 protein RADIALIS-like 31.7e-4091.67Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ
        MASSSLKQQRPE TWTAKQNKLFEKALALYDKETPERW NIAMAVG KSADEVKRHYE+LLEDL RIESGRVPIPNYRG  N DEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ

A0A6J1ICR6 protein RADIALIS-like 31.7e-4090.62Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ
        MASSSLKQQRPE TWTAKQNKLFEKALALYDKE PERW NIAMAVG KSADEVKRHYE+LLEDL+RIESGRVPIPNYRG  N DEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.1e-2253.47Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYR--GG---GNRDEELRLLKYLKL
        MASSS+  Q    +WTAKQNK FE+ALA YD++TP RWQN+A  VG K+ +EVKRHYE+L++D+  IE+G VP PNYR  GG   G   +E + ++ ++L
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYR--GG---GNRDEELRLLKYLKL

Query:  Q
        Q
Subjt:  Q

Q1A173 Protein RADIALIS-like 61.3e-2152Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYR-----GGGNRDEELRLLKYLKL
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A AVG K+ +EVKRHY++L+EDL  IE+GRVP+PNY+          D + R +K LK+
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYR-----GGGNRDEELRLLKYLKL

Q58FS3 Transcription factor RADIALIS2.8e-2154.22Show/hide
Query:  WTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYR-GGGNRDEELRLLKYLKLQ
        W+AK+NK FE+ALA+YDK+TP+RW N+A AV  ++ +EVK+HYE+L+ED++ IESG+VP PNYR  GGN   + +  + LK++
Subjt:  WTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYR-GGGNRDEELRLLKYLKLQ

Q6NNN0 Protein RADIALIS-like 32.6e-2259.76Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGN
        MAS+S+       +WT K+NKLFE+ALA YD++TP+RW N+A AVG KSA+EV+RHYE+L+ D+  IESGR P PNYR  GN
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGN

Q8GW75 Protein RADIALIS-like 53.6e-2453.4Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNY-------RGGGNRDEELRLLKYL
        MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RWQN+A AVG KSA+EVKRHY++L+EDL  IE   VP+P Y       +  G  D +LRL+K +
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNY-------RGGGNRDEELRLLKYL

Query:  KLQ
        ++Q
Subjt:  KLQ

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.5e-2553.4Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNY-------RGGGNRDEELRLLKYL
        MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RWQN+A AVG KSA+EVKRHY++L+EDL  IE   VP+P Y       +  G  D +LRL+K +
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNY-------RGGGNRDEELRLLKYL

Query:  KLQ
        ++Q
Subjt:  KLQ

AT1G75250.1 RAD-like 62.0e-2260.26Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYR
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A AVG K+ +EVKRHY++L+EDL  IE+GRVP+PNY+
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYR

AT1G75250.2 RAD-like 69.0e-2352Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYR-----GGGNRDEELRLLKYLKL
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A AVG K+ +EVKRHY++L+EDL  IE+GRVP+PNY+          D + R +K LK+
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYR-----GGGNRDEELRLLKYLKL

AT2G18328.1 RAD-like 44.2e-2060.26Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYR
        MASSS+      ++WTA+++K FE ALA +DK+TP+RWQ IA AVG KS +EVKRHYE+LL D+  IESGR P P YR
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYR

AT4G39250.1 RAD-like 18.2e-2453.47Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYR--GG---GNRDEELRLLKYLKL
        MASSS+  Q    +WTAKQNK FE+ALA YD++TP RWQN+A  VG K+ +EVKRHYE+L++D+  IE+G VP PNYR  GG   G   +E + ++ ++L
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYR--GG---GNRDEELRLLKYLKL

Query:  Q
        Q
Subjt:  Q


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCAAGTTCTTTGAAGCAGCAGCGACCGGAGACGACGTGGACGGCAAAGCAAAACAAGCTGTTCGAGAAGGCATTGGCGTTGTATGATAAAGAGACGCCTGAGAG
ATGGCAGAATATCGCCATGGCGGTTGGCGAGAAGTCAGCCGACGAAGTTAAAAGACACTACGAGGTGCTCTTGGAAGATCTCCGACGGATCGAGTCCGGTCGTGTTCCTA
TTCCCAATTACCGGGGCGGCGGTAATAGAGATGAAGAGCTGAGGCTGCTGAAGTATCTTAAGCTTCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCAAGTTCTTTGAAGCAGCAGCGACCGGAGACGACGTGGACGGCAAAGCAAAACAAGCTGTTCGAGAAGGCATTGGCGTTGTATGATAAAGAGACGCCTGAGAG
ATGGCAGAATATCGCCATGGCGGTTGGCGAGAAGTCAGCCGACGAAGTTAAAAGACACTACGAGGTGCTCTTGGAAGATCTCCGACGGATCGAGTCCGGTCGTGTTCCTA
TTCCCAATTACCGGGGCGGCGGTAATAGAGATGAAGAGCTGAGGCTGCTGAAGTATCTTAAGCTTCAATGA
Protein sequenceShow/hide protein sequence
MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ