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Cla97C02G031880 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C02G031880
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionProtein RADIALIS-like 1
Genome locationCla97Chr02:4835693..4837525
RNA-Seq ExpressionCla97C02G031880
SyntenyCla97C02G031880
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036150.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]7.2e-3896.39Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGSQGN
        MASMSSHGSGTWT KQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG G+QGN
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGSQGN

KAE8645641.1 hypothetical protein Csa_020418 [Cucumis sativus]1.4e-3696.3Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGSQ
        MASMSSHGSGTWT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGG+Q
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGSQ

XP_004151125.2 protein RADIALIS-like 1 [Cucumis sativus]2.7e-3796.34Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGSQG
        MASMSSHGSGTWT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGG+QG
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGSQG

XP_008447024.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]3.6e-3796.34Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGSQG
        MASMSSHGSGTWT KQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG G+QG
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGSQG

XP_022136064.1 protein RADIALIS-like 1 [Momordica charantia]3.0e-3683.16Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGSQGNDEEHEDPALRLM
        MASMSSHGS  WTAKQNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVEDVKFIESGQV FPYRTSGGGS GN    ++  +R M
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGSQGNDEEHEDPALRLM

TrEMBL top hitse value%identityAlignment
A0A0A0K348 SANT domain-containing protein1.3e-3796.34Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGSQG
        MASMSSHGSGTWT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGG+QG
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGSQG

A0A1S3BFW6 protein RADIALIS-like 11.7e-3796.34Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGSQG
        MASMSSHGSGTWT KQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG G+QG
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGSQG

A0A5A7SYK4 Protein RADIALIS-like 13.5e-3896.39Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGSQGN
        MASMSSHGSGTWT KQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG G+QGN
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGSQGN

A0A6J1C385 protein RADIALIS-like 11.5e-3683.16Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGSQGNDEEHEDPALRLM
        MASMSSHGS  WTAKQNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVEDVKFIESGQV FPYRTSGGGS GN    ++  +R M
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGSQGNDEEHEDPALRLM

A0A6J1GJE9 protein RADIALIS-like 11.4e-3491.57Show/hide
Query:  MASMSSHGS-GTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGSQG
        MASMSSHGS GTWT KQNKAFE+ALAVYDQDTPDRWLNVAKAV GKT EEV+RHYALLVEDVKFIESGQVPFPYRTSGGG+QG
Subjt:  MASMSSHGS-GTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGSQG

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 18.3e-2970.45Show/hide
Query:  ASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGSQGNDEEHE
        +SMSS  SG+WTAKQNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+  IE+G VPFP YRTSGG + G   + E
Subjt:  ASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGSQGNDEEHE

Q58FS3 Transcription factor RADIALIS3.9e-2661.54Show/hide
Query:  SSHGSG-TWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGSQGNDEEHEDPALR
        S+ GSG  W+AK+NKAFE+ALAVYD+DTPDRW NVA+AV G+T EEVK+HY +LVED+K+IESG+VPFP YRT+GG  + +++   +  +R
Subjt:  SSHGSG-TWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGSQGNDEEHEDPALR

Q6NNN0 Protein RADIALIS-like 35.2e-2366.67Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSG
        MAS S   S +WT K+NK FE+ALA YDQDTPDRW NVA+AVGGK+AEEV+RHY LL+ DV  IESG+ P P YR++G
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSG

Q8GW75 Protein RADIALIS-like 53.1e-2361.46Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGSQGNDEEHEDPALRLM
        MAS S   S +WT+KQNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED+  IE   VP P Y+T   GS+    +  D  LRLM
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGSQGNDEEHEDPALRLM

Q9SIJ5 Protein RADIALIS-like 21.2e-2764.89Show/hide
Query:  SMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGSQGNDEEHEDPALRLM
        SMSS+GSG+WT KQNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++ IE+G VPFP Y+T+ G S       E+  +R M
Subjt:  SMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGSQGNDEEHEDPALRLM

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.2e-2461.46Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGSQGNDEEHEDPALRLM
        MAS S   S +WT+KQNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED+  IE   VP P Y+T   GS+    +  D  LRLM
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGSQGNDEEHEDPALRLM

AT1G75250.1 RAD-like 65.3e-2364.63Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGSQ
        MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED+  IE+G+VP P Y+T    S+
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGSQ

AT1G75250.2 RAD-like 65.3e-2364.63Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGSQ
        MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED+  IE+G+VP P Y+T    S+
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGSQ

AT2G21650.1 Homeodomain-like superfamily protein8.5e-2964.89Show/hide
Query:  SMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGSQGNDEEHEDPALRLM
        SMSS+GSG+WT KQNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++ IE+G VPFP Y+T+ G S       E+  +R M
Subjt:  SMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGSQGNDEEHEDPALRLM

AT4G39250.1 RAD-like 15.9e-3070.45Show/hide
Query:  ASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGSQGNDEEHE
        +SMSS  SG+WTAKQNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+  IE+G VPFP YRTSGG + G   + E
Subjt:  ASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGSQGNDEEHE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCTTCTCATGGATCTGGTACATGGACTGCAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGACCGATGGCTCAA
TGTTGCAAAAGCTGTTGGGGGAAAAACTGCTGAGGAAGTCAAAAGGCATTATGCCCTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCCTATC
GAACCTCCGGAGGCGGTAGCCAAGGTAATGATGAGGAACATGAAGATCCAGCATTGAGATTGATGGTGAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATGTCTTCTCATGGATCTGGTACATGGACTGCAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGACCGATGGCTCAA
TGTTGCAAAAGCTGTTGGGGGAAAAACTGCTGAGGAAGTCAAAAGGCATTATGCCCTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCCTATC
GAACCTCCGGAGGCGGTAGCCAAGGTAATGATGAGGAACATGAAGATCCAGCATTGAGATTGATGGTGAAGTAA
Protein sequenceShow/hide protein sequence
MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGSQGNDEEHEDPALRLMVK