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Cla97C02G031900 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C02G031900
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Descriptionprotein RADIALIS-like 1
Genome locationCla97Chr02:4875707..4877410
RNA-Seq ExpressionCla97C02G031900
SyntenyCla97C02G031900
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036150.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]1.0e-2271.25Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVEDFLFLIEAQEAIIKCRTDDDG
        MASMS+HGSG WT KQNKAFE+ALA+YDQDTPDRW+NVAKA+GGKT EEVKRHY +LVED  F IE+ +     RT  DG
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVEDFLFLIEAQEAIIKCRTDDDG

KAA0036170.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]2.1e-2391.67Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVED
        MASMSAHGSGVWTAKQNKAFEEALAMYD+DTPDRW+NVAKAIGGKTEEEVKRHY++L+ED
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVED

XP_004151116.1 protein RADIALIS-like 1 [Cucumis sativus]4.6e-2390Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVED
        MAS+SAHGSGVWTAKQNKAFEEALAMYD+DTPDRW+NVAKAIGGKTEEEVKRHY++L+ED
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVED

XP_008447025.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]6.0e-2390Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVED
        MASMSAHGSGVWTAKQNKAFE+ALAMYD+DTPDRW+NVAKAIGGKTEEEVKRHY++L+ED
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVED

XP_022952073.1 protein RADIALIS-like 1 [Cucurbita moschata]7.1e-2495Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVED
        MASMSAHGSGVWTAKQNKAFEEALAMYDQD PDRW+NVAKAIGGKTEEEVKRHY+VLVED
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVED

TrEMBL top hitse value%identityAlignment
A0A0A0K344 SANT domain-containing protein2.2e-2390Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVED
        MAS+SAHGSGVWTAKQNKAFEEALAMYD+DTPDRW+NVAKAIGGKTEEEVKRHY++L+ED
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVED

A0A1S3BGF6 protein RADIALIS-like 12.9e-2390Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVED
        MASMSAHGSGVWTAKQNKAFE+ALAMYD+DTPDRW+NVAKAIGGKTEEEVKRHY++L+ED
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVED

A0A5A7SYM4 Protein RADIALIS-like 11.0e-2391.67Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVED
        MASMSAHGSGVWTAKQNKAFEEALAMYD+DTPDRW+NVAKAIGGKTEEEVKRHY++L+ED
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVED

A0A6J1GJG0 protein RADIALIS-like 13.4e-2495Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVED
        MASMSAHGSGVWTAKQNKAFEEALAMYDQD PDRW+NVAKAIGGKTEEEVKRHY+VLVED
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVED

A0A6J1IA78 protein RADIALIS-like 13.4e-2495Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVED
        MASMSAHGSGVWTAKQNKAFEEALAMYDQD PDRW+NVAKAIGGKTEEEVKRHY+VLVED
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVED

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 18.4e-2053.26Show/hide
Query:  ASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVEDFLFLIEAQEAIIKCRTD---DDGKIEEEKNEVQ
        +SMS+  SG WTAKQNKAFE+ALA YDQDTP+RW NVAK +GGKT EEVKRHYE+LV+D   +          RT     +G++ +E+  ++
Subjt:  ASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVEDFLFLIEAQEAIIKCRTD---DDGKIEEEKNEVQ

Q1A173 Protein RADIALIS-like 61.3e-1767.74Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVEDFL
        MAS S      WT  QNK FE ALA+YD+DTPDRW NVAKA+GGKT EEVKRHY++LVED +
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVEDFL

Q58FS3 Transcription factor RADIALIS3.0e-1753.01Show/hide
Query:  SAHGSG-VWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVEDFLFLIEAQEAIIKCRTDDDGKIEEEK
        S  GSG  W+AK+NKAFE ALA+YD+DTPDRW NVA+A+ G+T EEVK+HYE+LVED  ++   +      RT       +EK
Subjt:  SAHGSG-VWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVEDFLFLIEAQEAIIKCRTDDDGKIEEEK

Q8GW75 Protein RADIALIS-like 55.5e-1957.5Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVEDFLFLIEAQEAIIKCRTDDDG
        MAS S   S  WT+KQNK FE ALA+YD+DTPDRW NVAKA+G K+ EEVKRHY++LVED + + +    + K +T D G
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVEDFLFLIEAQEAIIKCRTDDDG

Q9SIJ5 Protein RADIALIS-like 23.2e-1974.14Show/hide
Query:  SMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVED
        SMS++GSG WT KQNKAFE ALA+YDQDTPDRW NVA+A+GGKT EE KR Y++LV D
Subjt:  SMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVED

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 53.9e-2057.5Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVEDFLFLIEAQEAIIKCRTDDDG
        MAS S   S  WT+KQNK FE ALA+YD+DTPDRW NVAKA+G K+ EEVKRHY++LVED + + +    + K +T D G
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVEDFLFLIEAQEAIIKCRTDDDG

AT1G75250.1 RAD-like 69.5e-1967.74Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVEDFL
        MAS S      WT  QNK FE ALA+YD+DTPDRW NVAKA+GGKT EEVKRHY++LVED +
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVEDFL

AT1G75250.2 RAD-like 69.5e-1967.74Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVEDFL
        MAS S      WT  QNK FE ALA+YD+DTPDRW NVAKA+GGKT EEVKRHY++LVED +
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVEDFL

AT2G21650.1 Homeodomain-like superfamily protein2.3e-2074.14Show/hide
Query:  SMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVED
        SMS++GSG WT KQNKAFE ALA+YDQDTPDRW NVA+A+GGKT EE KR Y++LV D
Subjt:  SMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVED

AT4G39250.1 RAD-like 16.0e-2153.26Show/hide
Query:  ASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVEDFLFLIEAQEAIIKCRTD---DDGKIEEEKNEVQ
        +SMS+  SG WTAKQNKAFE+ALA YDQDTP+RW NVAK +GGKT EEVKRHYE+LV+D   +          RT     +G++ +E+  ++
Subjt:  ASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVEDFLFLIEAQEAIIKCRTD---DDGKIEEEKNEVQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCAGCTCATGGGTCAGGTGTATGGACTGCAAAGCAAAACAAGGCATTTGAGGAGGCTTTGGCAATGTATGATCAAGACACGCCTGATAGATGGATTAA
TGTTGCAAAGGCCATTGGTGGGAAAACTGAAGAGGAAGTGAAAAGGCATTATGAAGTTCTTGTGGAGGATTTCCTTTTCCTTATAGAAGCTCAAGAAGCAATAATTAAGT
GCCGTACAGATGATGATGGAAAGATAGAGGAGGAGAAAAATGAAGTTCAATTATTAAGCCAGGTGCAGTACTGGAAGAATAAAAGAAGAAAGAGCCATTTTCTTGCTGTT
TTCTCTATTGTATCTCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATGTCAGCTCATGGGTCAGGTGTATGGACTGCAAAGCAAAACAAGGCATTTGAGGAGGCTTTGGCAATGTATGATCAAGACACGCCTGATAGATGGATTAA
TGTTGCAAAGGCCATTGGTGGGAAAACTGAAGAGGAAGTGAAAAGGCATTATGAAGTTCTTGTGGAGGATTTCCTTTTCCTTATAGAAGCTCAAGAAGCAATAATTAAGT
GCCGTACAGATGATGATGGAAAGATAGAGGAGGAGAAAAATGAAGTTCAATTATTAAGCCAGGTGCAGTACTGGAAGAATAAAAGAAGAAAGAGCCATTTTCTTGCTGTT
TTCTCTATTGTATCTCTTTAA
Protein sequenceShow/hide protein sequence
MASMSAHGSGVWTAKQNKAFEEALAMYDQDTPDRWINVAKAIGGKTEEEVKRHYEVLVEDFLFLIEAQEAIIKCRTDDDGKIEEEKNEVQLLSQVQYWKNKRRKSHFLAV
FSIVSL