CuGenDBv2

Gene ID	Cla97C02G036180
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Ribonuclease H
Genome location	Cla97Chr02:16256598..16260545
RNA-Seq Expression	Cla97C02G036180
Synteny	Cla97C02G036180
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function) GO:0008233 - peptidase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031753.1 gag protease polyprotein [Cucumis melo var. makuwa]

1.0e-45

66.2

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Query:  PSTRNWKLLVSINTDGLLKVKRHDVIITRPKENDLYDEEEATSCHHVTIEEALEAKVLEEDAKEASSSLEDGGQSTIDELKEVNLRTIEEPRPSFISAQL
        PS    K+ VS+NT+G LKVKRHDV+ TRP++N+  DE + T C+HVT+EE  +  + EEDA+ A  SLEDGGQSTIDELKEVNL T EEPRP+FIS QL
Subjt:  PSTRNWKLLVSINTDGLLKVKRHDVIITRPKENDLYDEEEATSCHHVTIEEALEAKVLEEDAKEASSSLEDGGQSTIDELKEVNLRTIEEPRPSFISAQL

Query:  ADDEEKKYVNLLTVYKDVFAWLYREMPGLDPKVVVHRLTIKP
        +D++E +YVNLL  YKDVFAW Y+EMPGLDPKV VHRL IKP
Subjt:  ADDEEKKYVNLLTVYKDVFAWLYREMPGLDPKVVVHRLTIKP

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]

2.3e-45

66.2

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Query:  PSTRNWKLLVSINTDGLLKVKRHDVIITRPKENDLYDEEEATSCHHVTIEEALEAKVLEEDAKEASSSLEDGGQSTIDELKEVNLRTIEEPRPSFISAQL
        PS    K+ VS+NT+G LKVKRHDV+ TRP++N+  DE +   C+HVTIEE  +  + EEDA+ A  SLEDGGQSTIDELKEVNL T EEPRP+FIS QL
Subjt:  PSTRNWKLLVSINTDGLLKVKRHDVIITRPKENDLYDEEEATSCHHVTIEEALEAKVLEEDAKEASSSLEDGGQSTIDELKEVNLRTIEEPRPSFISAQL

Query:  ADDEEKKYVNLLTVYKDVFAWLYREMPGLDPKVVVHRLTIKP
        +D++E +YVNLL  YKDVFAW Y+EMPGLDPKV VHRL IKP
Subjt:  ADDEEKKYVNLLTVYKDVFAWLYREMPGLDPKVVVHRLTIKP

KAA0053731.1 uncharacterized protein E6C27_scaffold135G001080 [Cucumis melo var. makuwa]

2.3e-45

66.9

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Query:  PSTRNWKLLVSINTDGLLKVKRHDVIITRPKENDLYDEEEATSCHHVTIEEALEAKVLEEDAKEASSSLEDGGQSTIDELKEVNLRTIEEPRPSFISAQL
        PS    K+ VS+NT+G LKVKRHDV+ TRP++N+L +E +   C HVTIEE  E  + EEDA+ A  SLEDGGQSTIDELKEVNL T EEPRP+FIS QL
Subjt:  PSTRNWKLLVSINTDGLLKVKRHDVIITRPKENDLYDEEEATSCHHVTIEEALEAKVLEEDAKEASSSLEDGGQSTIDELKEVNLRTIEEPRPSFISAQL

Query:  ADDEEKKYVNLLTVYKDVFAWLYREMPGLDPKVVVHRLTIKP
        +D++E +YVNLL  YKDVFAW Y+EMPGLDPKV VHRL IKP
Subjt:  ADDEEKKYVNLLTVYKDVFAWLYREMPGLDPKVVVHRLTIKP

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]

2.3e-45

66.2

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Query:  PSTRNWKLLVSINTDGLLKVKRHDVIITRPKENDLYDEEEATSCHHVTIEEALEAKVLEEDAKEASSSLEDGGQSTIDELKEVNLRTIEEPRPSFISAQL
        PS    K+ VS+NT+G LKVKRHDV+ TRP++N+  DE +   C+HVTIEE  +  + EEDA+ A  SLEDGGQSTIDELKEVNL T EEPRP+FIS QL
Subjt:  PSTRNWKLLVSINTDGLLKVKRHDVIITRPKENDLYDEEEATSCHHVTIEEALEAKVLEEDAKEASSSLEDGGQSTIDELKEVNLRTIEEPRPSFISAQL

Query:  ADDEEKKYVNLLTVYKDVFAWLYREMPGLDPKVVVHRLTIKP
        +D++E +YVNLL  YKDVFAW Y+EMPGLDPKV VHRL IKP
Subjt:  ADDEEKKYVNLLTVYKDVFAWLYREMPGLDPKVVVHRLTIKP

TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]

2.3e-45

66.2

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Query:  PSTRNWKLLVSINTDGLLKVKRHDVIITRPKENDLYDEEEATSCHHVTIEEALEAKVLEEDAKEASSSLEDGGQSTIDELKEVNLRTIEEPRPSFISAQL
        PS    K+ VS+NT+G LKVKRHDV+ TRP++N+  DE +   C+HVTIEE  +  + EEDA+ A  SLEDGGQSTIDELKEVNL T EEPRP+FIS QL
Subjt:  PSTRNWKLLVSINTDGLLKVKRHDVIITRPKENDLYDEEEATSCHHVTIEEALEAKVLEEDAKEASSSLEDGGQSTIDELKEVNLRTIEEPRPSFISAQL

Query:  ADDEEKKYVNLLTVYKDVFAWLYREMPGLDPKVVVHRLTIKP
        +D++E +YVNLL  YKDVFAW Y+EMPGLDPKV VHRL IKP
Subjt:  ADDEEKKYVNLLTVYKDVFAWLYREMPGLDPKVVVHRLTIKP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SND9 Gag protease polyprotein

5.1e-46

66.2

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Query:  PSTRNWKLLVSINTDGLLKVKRHDVIITRPKENDLYDEEEATSCHHVTIEEALEAKVLEEDAKEASSSLEDGGQSTIDELKEVNLRTIEEPRPSFISAQL
        PS    K+ VS+NT+G LKVKRHDV+ TRP++N+  DE + T C+HVT+EE  +  + EEDA+ A  SLEDGGQSTIDELKEVNL T EEPRP+FIS QL
Subjt:  PSTRNWKLLVSINTDGLLKVKRHDVIITRPKENDLYDEEEATSCHHVTIEEALEAKVLEEDAKEASSSLEDGGQSTIDELKEVNLRTIEEPRPSFISAQL

Query:  ADDEEKKYVNLLTVYKDVFAWLYREMPGLDPKVVVHRLTIKP
        +D++E +YVNLL  YKDVFAW Y+EMPGLDPKV VHRL IKP
Subjt:  ADDEEKKYVNLLTVYKDVFAWLYREMPGLDPKVVVHRLTIKP

A0A5A7TZU9 Ribonuclease H

1.1e-45

66.2

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Query:  PSTRNWKLLVSINTDGLLKVKRHDVIITRPKENDLYDEEEATSCHHVTIEEALEAKVLEEDAKEASSSLEDGGQSTIDELKEVNLRTIEEPRPSFISAQL
        PS    K+ VS+NT+G LKVKRHDV+ TRP++N+  DE +   C+HVTIEE  +  + EEDA+ A  SLEDGGQSTIDELKEVNL T EEPRP+FIS QL
Subjt:  PSTRNWKLLVSINTDGLLKVKRHDVIITRPKENDLYDEEEATSCHHVTIEEALEAKVLEEDAKEASSSLEDGGQSTIDELKEVNLRTIEEPRPSFISAQL

Query:  ADDEEKKYVNLLTVYKDVFAWLYREMPGLDPKVVVHRLTIKP
        +D++E +YVNLL  YKDVFAW Y+EMPGLDPKV VHRL IKP
Subjt:  ADDEEKKYVNLLTVYKDVFAWLYREMPGLDPKVVVHRLTIKP

A0A5A7UJR2 Reverse transcriptase

1.1e-45

66.9

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Query:  PSTRNWKLLVSINTDGLLKVKRHDVIITRPKENDLYDEEEATSCHHVTIEEALEAKVLEEDAKEASSSLEDGGQSTIDELKEVNLRTIEEPRPSFISAQL
        PS    K+ VS+NT+G LKVKRHDV+ TRP++N+L +E +   C HVTIEE  E  + EEDA+ A  SLEDGGQSTIDELKEVNL T EEPRP+FIS QL
Subjt:  PSTRNWKLLVSINTDGLLKVKRHDVIITRPKENDLYDEEEATSCHHVTIEEALEAKVLEEDAKEASSSLEDGGQSTIDELKEVNLRTIEEPRPSFISAQL

Query:  ADDEEKKYVNLLTVYKDVFAWLYREMPGLDPKVVVHRLTIKP
        +D++E +YVNLL  YKDVFAW Y+EMPGLDPKV VHRL IKP
Subjt:  ADDEEKKYVNLLTVYKDVFAWLYREMPGLDPKVVVHRLTIKP

A0A5D3BIH8 Uncharacterized protein

1.1e-45

66.2

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Query:  PSTRNWKLLVSINTDGLLKVKRHDVIITRPKENDLYDEEEATSCHHVTIEEALEAKVLEEDAKEASSSLEDGGQSTIDELKEVNLRTIEEPRPSFISAQL
        PS    K+ VS+NT+G LKVKRHDV+ TRP++N+  DE +   C+HVTIEE  +  + EEDA+ A  SLEDGGQSTIDELKEVNL T EEPRP+FIS QL
Subjt:  PSTRNWKLLVSINTDGLLKVKRHDVIITRPKENDLYDEEEATSCHHVTIEEALEAKVLEEDAKEASSSLEDGGQSTIDELKEVNLRTIEEPRPSFISAQL

Query:  ADDEEKKYVNLLTVYKDVFAWLYREMPGLDPKVVVHRLTIKP
        +D++E +YVNLL  YKDVFAW Y+EMPGLDPKV VHRL IKP
Subjt:  ADDEEKKYVNLLTVYKDVFAWLYREMPGLDPKVVVHRLTIKP

A0A5D3D1E5 Ribonuclease H

1.1e-45

66.2

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Query:  PSTRNWKLLVSINTDGLLKVKRHDVIITRPKENDLYDEEEATSCHHVTIEEALEAKVLEEDAKEASSSLEDGGQSTIDELKEVNLRTIEEPRPSFISAQL
        PS    K+ VS+NT+G LKVKRHDV+ TRP++N+  DE +   C+HVTIEE  +  + EEDA+ A  SLEDGGQSTIDELKEVNL T EEPRP+FIS QL
Subjt:  PSTRNWKLLVSINTDGLLKVKRHDVIITRPKENDLYDEEEATSCHHVTIEEALEAKVLEEDAKEASSSLEDGGQSTIDELKEVNLRTIEEPRPSFISAQL

Query:  ADDEEKKYVNLLTVYKDVFAWLYREMPGLDPKVVVHRLTIKP
        +D++E +YVNLL  YKDVFAW Y+EMPGLDPKV VHRL IKP
Subjt:  ADDEEKKYVNLLTVYKDVFAWLYREMPGLDPKVVVHRLTIKP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCCCTTTGGGAAAGAAAAAGTGGAAGTGCTGACTGTGGTTGCAAAAAAAAGGCATTCAGGCTTTGGTTTCGTCTCTAAAGACAAAGTGGAGTCCCGTGTAAGTCTTCC
TGACCTTACCTTAACTGATTTGGTAGGACCGAGGAAAGAGATCTTTCCATCAAAGCACAAGTCGACTTCGAGTGAGTCTTCAGATCACTCCAATGAGTTAATTGTCTCTC
AGGAGAACCCTAGTAAACATATTAGTTCTCACGCTTCTGGGTCCAACCAAAATAGGATTGAAGTAACTAAATGTCACATTGATAAAAACTTGTTACCTGAAAACGTGCGC
CCTGAATTCATCCACTCTGAAACTGTGGTTACTGAGAATGTGCCGTCGAAAAATCCATCTAAGTCCGCTAAAGGTATGTCCAATGTTTGCTCTCACAAAAATTTCAATGA
AAACCTTGTTACTGTGCCTAATGTTATCACCGAAAGTAATGTTGAGAATGTACGTTCCACTACTGAAAATGTGAAGAATCCTATCTCTGTTCCCCCCAAGTCGAATGCTG
ATAGTGGCGTGAAGCGAAGTAAGTCTACTTGTATTGATCCTCAAGTTAGTCTTGTGAGTAATCCGTCTCCTGTATGTGGTACTCATGATGAGCAAGAAACTACTCCAAAG
GTTGCCTTTAGGTCTTCAAGTACTAAGTTAGAGAAAATGTCGTTTGATGAAGATGATGAGTGTGGTTTGTTGAGTTGTTCTGAAGAAGAAACTCTTGTCACCACCAGAGT
AACAAGAAGCTCTTCCAAACGGAGAACCAAGACTGCATCCGTGAGCAATGTGGCTGATGTTCCTTTGGATGAGGTCTCCTTTCACTTTGAAAAGGGTGCTAGTCTTTGGA
AATATGTGGTGAAACGCAAAATTGTTAATGAAAAGGAACTATCTCAAAACACCCAAGAGTGTTTAGACCTTATGGATCTTTTGCTGGAAGCTCAACAGATAAAATTGTAC
TATGATTGGGTCCCTTCTACCCGCAATTGGAAATTGCTTGTTTCGATAAATACAGATGGTTTGTTAAAAGTAAAACGACATGACGTCATCATCACTCGACCTAAAGAGAA
TGACCTATATGATGAAGAAGAGGCAACAAGTTGTCATCATGTCACAATAGAAGAAGCATTAGAGGCTAAGGTGCTTGAAGAGGATGCGAAAGAAGCTTCATCATCACTTG
AGGATGGTGGTCAATCAACGATTGATGAGCTAAAGGAAGTCAACCTTCGCACAATAGAGGAGCCTCGTCCATCCTTCATAAGTGCACAACTTGCTGATGACGAAGAAAAG
AAATATGTGAACTTACTCACGGTATATAAAGATGTCTTTGCTTGGTTGTATAGAGAAATGCCTGGGCTTGATCCAAAAGTGGTTGTCCATCGCCTAACAATTAAACCAAG
GAAAGTTTCTTGGGTTCGTTGTGAGGCACTGTGGGATACAAAATTGATCAATCTGGAATCGCGTGAATTCTGCCTGAAGTGGTCAGGCGGAGGGAAGGCTCTTCTCTTTC
AAGCTATTTGTCTCCGGTTGTCGTGTAAGCCCGTACCTGATATTGTGAGAAGGCAAGTTAAGAAGAGACTATGA

mRNA sequence

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Protein sequence

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MPFGKEKVEVLTVVAKKRHSGFGFVSKDKVESRVSLPDLTLTDLVGPRKEIFPSKHKSTSSESSDHSNELIVSQENPSKHISSHASGSNQNRIEVTKCHIDKNLLPENVR
PEFIHSETVVTENVPSKNPSKSAKGMSNVCSHKNFNENLVTVPNVITESNVENVRSTTENVKNPISVPPKSNADSGVKRSKSTCIDPQVSLVSNPSPVCGTHDEQETTPK
VAFRSSSTKLEKMSFDEDDECGLLSCSEEETLVTTRVTRSSSKRRTKTASVSNVADVPLDEVSFHFEKGASLWKYVVKRKIVNEKELSQNTQECLDLMDLLLEAQQIKLY
YDWVPSTRNWKLLVSINTDGLLKVKRHDVIITRPKENDLYDEEEATSCHHVTIEEALEAKVLEEDAKEASSSLEDGGQSTIDELKEVNLRTIEEPRPSFISAQLADDEEK
KYVNLLTVYKDVFAWLYREMPGLDPKVVVHRLTIKPRKVSWVRCEALWDTKLINLESREFCLKWSGGGKALLFQAICLRLSCKPVPDIVRRQVKKRL

Cla97C02G036180 (gene) of Watermelon (97103) v2.5 genome