; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cla97C02G036190 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C02G036190
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionGlycine-rich RNA-binding protein 3
Genome locationCla97Chr02:16269982..16271871
RNA-Seq ExpressionCla97C02G036190
SyntenyCla97C02G036190
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034781.1 glycine-rich RNA-binding protein 3 [Cucumis melo var. makuwa]1.2e-6085.71Show/hide
Query:  MMSNMNTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEN
        MMSN NTL+LL RKALTNIQTPIL+FR FCSQ  S+SA SSSPSAP+NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFV+F NEN
Subjt:  MMSNMNTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEN

Query:  DAQCAKDAMDGKASRRPLRISFALDKVRGGPVVIPRLSNVNNMVGQR
        DAQCAKDAMDGKA RRPL+ISFAL+KVRGGPV +PRLSN+NN+VG+R
Subjt:  DAQCAKDAMDGKASRRPLRISFALDKVRGGPVVIPRLSNVNNMVGQR

XP_022944150.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata]4.7e-6086.67Show/hide
Query:  MMSNMNTLILLGRKALTNIQTPILSFRYFCSQASS--SSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN
        MMSN N L+LL R+ALTNIQTP+LSFR FCSQ+SS  SSAPSSSPSAPNNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN
Subjt:  MMSNMNTLILLGRKALTNIQTPILSFRYFCSQASS--SSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN

Query:  ENDAQCAKDAMDGKA-SRRPLRISFALDKVRGGPVVIPRLSNVNNMVGQR
        E+DAQ AKDAMDGKA   RPLRISFALDKVRGGPVVIPRLSN+ NM G+R
Subjt:  ENDAQCAKDAMDGKA-SRRPLRISFALDKVRGGPVVIPRLSNVNNMVGQR

XP_022986397.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]1.1e-6186Show/hide
Query:  MMSNMNTLILLGRKALTNIQTPILSFRYFCSQASS--SSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN
        MMSN N L+LL R+ALTNIQTP+LSFR FCSQ+SS  SSAPSSSPSAPNNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN
Subjt:  MMSNMNTLILLGRKALTNIQTPILSFRYFCSQASS--SSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN

Query:  ENDAQCAKDAMDGKA-SRRPLRISFALDKVRGGPVVIPRLSNVNNMVGQR
        E+DAQ AKDAMDGKA   RPLRISFALDKVRGGPVV+PRLSN+NN++G+R
Subjt:  ENDAQCAKDAMDGKA-SRRPLRISFALDKVRGGPVVIPRLSNVNNMVGQR

XP_023512965.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo]1.6e-6085.33Show/hide
Query:  MMSNMNTLILLGRKALTNIQTPILSFRYFCSQ--ASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN
        MMSN NTL+ L R+ALTNIQTP+LSFR FCSQ  +SSSSAPSSSPSAPNNKLFVAGLSWS+DERSLKDAFSS+GEVTEVRIMYDKDSGRSRGFGFVNFTN
Subjt:  MMSNMNTLILLGRKALTNIQTPILSFRYFCSQ--ASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN

Query:  ENDAQCAKDAMDGKA-SRRPLRISFALDKVRGGPVVIPRLSNVNNMVGQR
        E+DAQ AKDAMDGKA   RPLRISFALDKVRGGPVV+PRLSN+NN+ G+R
Subjt:  ENDAQCAKDAMDGKA-SRRPLRISFALDKVRGGPVVIPRLSNVNNMVGQR

XP_038902171.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Benincasa hispida]5.0e-6288.59Show/hide
Query:  MMSNMNTLILLGRKALTNIQTPILSFRYFCSQ-ASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNE
        MMSN N+LILLGRKALTN QT ILSFRYF SQ ASSSSAPSSSPSAPN++LFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNE
Subjt:  MMSNMNTLILLGRKALTNIQTPILSFRYFCSQ-ASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNE

Query:  NDAQCAKDAMDGKA-SRRPLRISFALDKVRGGPVVIPRLSNVNNMVGQR
        NDAQCAKDAMDGKA   RPLRISFALDKVRGGPVV+PRLSN++N+V +R
Subjt:  NDAQCAKDAMDGKA-SRRPLRISFALDKVRGGPVVIPRLSNVNNMVGQR

TrEMBL top hitse value%identityAlignment
A0A0A0LQB7 RRM domain-containing protein1.2e-5881.46Show/hide
Query:  MSNMNTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEND
        MSN NT +LL RKALTNIQTP L FR FCSQ   S++P SS  +PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNF N ND
Subjt:  MSNMNTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEND

Query:  AQCAKDAMDGKA-SRRPLRISFALDKVRGGPVVIPRLSNVNNMVGQRCGNQ
        AQCAKDAMDGKA   RPLRISFALDKVRG PVV+PRLSN+NN+VG+R GNQ
Subjt:  AQCAKDAMDGKA-SRRPLRISFALDKVRGGPVVIPRLSNVNNMVGQRCGNQ

A0A1S3C2R4 glycine-rich RNA-binding protein 3, mitochondrial6.6e-6084.46Show/hide
Query:  MMSNMNTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEN
        MMSN NTL+LL RKALTNIQTPIL+FR FCSQ  S+SA SSSPSAP+NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFV+F NEN
Subjt:  MMSNMNTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEN

Query:  DAQCAKDAMDGKA-SRRPLRISFALDKVRGGPVVIPRLSNVNNMVGQR
        DAQCAKDAMDGKA   RPL+ISFAL+KVRGGPV +PRLSN+NN+VG+R
Subjt:  DAQCAKDAMDGKA-SRRPLRISFALDKVRGGPVVIPRLSNVNNMVGQR

A0A5D3CH06 Glycine-rich RNA-binding protein 36.0e-6185.71Show/hide
Query:  MMSNMNTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEN
        MMSN NTL+LL RKALTNIQTPIL+FR FCSQ  S+SA SSSPSAP+NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFV+F NEN
Subjt:  MMSNMNTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEN

Query:  DAQCAKDAMDGKASRRPLRISFALDKVRGGPVVIPRLSNVNNMVGQR
        DAQCAKDAMDGKA RRPL+ISFAL+KVRGGPV +PRLSN+NN+VG+R
Subjt:  DAQCAKDAMDGKASRRPLRISFALDKVRGGPVVIPRLSNVNNMVGQR

A0A6J1FYH8 glycine-rich RNA-binding protein 4, mitochondrial-like2.3e-6086.67Show/hide
Query:  MMSNMNTLILLGRKALTNIQTPILSFRYFCSQASS--SSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN
        MMSN N L+LL R+ALTNIQTP+LSFR FCSQ+SS  SSAPSSSPSAPNNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN
Subjt:  MMSNMNTLILLGRKALTNIQTPILSFRYFCSQASS--SSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN

Query:  ENDAQCAKDAMDGKA-SRRPLRISFALDKVRGGPVVIPRLSNVNNMVGQR
        E+DAQ AKDAMDGKA   RPLRISFALDKVRGGPVVIPRLSN+ NM G+R
Subjt:  ENDAQCAKDAMDGKA-SRRPLRISFALDKVRGGPVVIPRLSNVNNMVGQR

A0A6J1J7F1 glycine-rich RNA-binding protein 4, mitochondrial-like5.4e-6286Show/hide
Query:  MMSNMNTLILLGRKALTNIQTPILSFRYFCSQASS--SSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN
        MMSN N L+LL R+ALTNIQTP+LSFR FCSQ+SS  SSAPSSSPSAPNNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN
Subjt:  MMSNMNTLILLGRKALTNIQTPILSFRYFCSQASS--SSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN

Query:  ENDAQCAKDAMDGKA-SRRPLRISFALDKVRGGPVVIPRLSNVNNMVGQR
        E+DAQ AKDAMDGKA   RPLRISFALDKVRGGPVV+PRLSN+NN++G+R
Subjt:  ENDAQCAKDAMDGKA-SRRPLRISFALDKVRGGPVVIPRLSNVNNMVGQR

SwissProt top hitse value%identityAlignment
P39697 40S ribosomal protein S19, mitochondrial1.2e-1357.58Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGK
        + KL++ GLS   DE SLKDAFSSF  VTE R+M +K +GRSRG+GFVNF +E+ A  A  AM+G+
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGK

Q9FNR1 Glycine-rich RNA-binding protein 3, mitochondrial5.6e-1644.71Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGK-ASRRPLRISFALDKVRGG
        ++KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV FT+   A  A  A+DG+    R +++++A D+  GG
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGK-ASRRPLRISFALDKVRGG

Q9LIS2 Glycine-rich RNA-binding protein 4, mitochondrial3.3e-1651.85Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGK-ASRRPLRISFALDK
        ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+ E+ A  A   MDGK  + R +R++ A ++
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGK-ASRRPLRISFALDK

Q9SVM8 Glycine-rich RNA-binding protein 2, mitochondrial1.6e-1548.15Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGK-ASRRPLRISFALDK
        + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +E  A  A   MDGK  + R +R++ A D+
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGK-ASRRPLRISFALDK

W8E7I1 RNA-binding protein 39.0e-1445.98Show/hide
Query:  SAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKA-SRRPLRISFALDKVRG
        S+   KLFV GL+++ DER+L+D FSSFG ++EV ++ D+++ RSRGFGF+ FTN   A  A  AM+G++   R +R+  A    RG
Subjt:  SAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKA-SRRPLRISFALDKVRG

Arabidopsis top hitse value%identityAlignment
AT3G08000.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.5e-3562.41Show/hide
Query:  NTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCA
        N + LL R+     Q  I S  +F  Q  +SS+ S     P++KLF+ GLSWS+DE+SLKDAFSSFGEV EVRI YDK SGRSRGFGFV+F  E DA  A
Subjt:  NTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCA

Query:  KDAMDGKA-SRRPLRISFALDKVRGGPVVIPRL
        KDAMDGK    RPLRISFAL++VRGGPVV+PRL
Subjt:  KDAMDGKA-SRRPLRISFALDKVRGGPVVIPRL

AT3G23830.1 glycine-rich RNA-binding protein 42.3e-1751.85Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGK-ASRRPLRISFALDK
        ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+ E+ A  A   MDGK  + R +R++ A ++
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGK-ASRRPLRISFALDK

AT3G23830.2 glycine-rich RNA-binding protein 42.3e-1751.85Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGK-ASRRPLRISFALDK
        ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+ E+ A  A   MDGK  + R +R++ A ++
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGK-ASRRPLRISFALDK

AT4G13850.4 glycine-rich RNA-binding protein 21.1e-1748.24Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGK-ASRRPLRISFALDKVRGG
        + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +E  A  A   MDGK  + R +R++ A D+  GG
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGK-ASRRPLRISFALDKVRGG

AT5G61030.1 glycine-rich RNA-binding protein 34.0e-1744.71Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGK-ASRRPLRISFALDKVRGG
        ++KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV FT+   A  A  A+DG+    R +++++A D+  GG
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGK-ASRRPLRISFALDKVRGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAGCAACATGAACACCTTGATACTGCTTGGCAGAAAAGCACTCACCAATATCCAAACCCCAATTCTGAGCTTTCGTTACTTCTGTTCTCAAGCCTCCTCCTCCTC
GGCTCCCTCTTCTTCTCCTTCTGCGCCAAACAATAAGCTCTTCGTCGCAGGGTTGTCTTGGTCGATGGACGAGAGATCATTGAAAGATGCTTTTTCTTCGTTTGGGGAGG
TTACTGAAGTCAGGATAATGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGGTTTGTGAACTTCACAAATGAAAATGATGCACAATGTGCAAAAGATGCAATGGAT
GGAAAGGCAAGTCGGCGACCATTGAGGATAAGCTTTGCCCTTGACAAGGTCCGTGGAGGACCTGTTGTCATTCCTCGACTTTCAAACGTCAACAACATGGTGGGCCAAAG
GTGTGGAAACCAATAG
mRNA sequenceShow/hide mRNA sequence
CTTTGGTTAGCATGAAAAACACCCATTTCTCCAAAGTTCACAGTCAATTAATCGGCCTTTAAACGCACATTCTAAAATCACATCAATTGACGAGCTTTGTGATAGCAAAG
TTTTAGTTCCCGTCGTCGAACTCGATCACGAGCAATAACAAATGATGAGCAACATGAACACCTTGATACTGCTTGGCAGAAAAGCACTCACCAATATCCAAACCCCAATT
CTGAGCTTTCGTTACTTCTGTTCTCAAGCCTCCTCCTCCTCGGCTCCCTCTTCTTCTCCTTCTGCGCCAAACAATAAGCTCTTCGTCGCAGGGTTGTCTTGGTCGATGGA
CGAGAGATCATTGAAAGATGCTTTTTCTTCGTTTGGGGAGGTTACTGAAGTCAGGATAATGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGGTTTGTGAACTTCA
CAAATGAAAATGATGCACAATGTGCAAAAGATGCAATGGATGGAAAGGCAAGTCGGCGACCATTGAGGATAAGCTTTGCCCTTGACAAGGTCCGTGGAGGACCTGTTGTC
ATTCCTCGACTTTCAAACGTCAACAACATGGTGGGCCAAAGGTGTGGAAACCAATAGTATAAAGAACCTCAAGTTAGTATTGTTTACTAATGGCAGAAAAATGCAATATC
AAATTTCTTGTTTGTACGCTCCTATATCCAAATATTTGGAAGAAATGAGGGATCAAAATGCTTGTAGAACTACTTACGATTTATTTTGTGTCCATGATAGATGTTCCCAA
TTTATTTGGCCAGAAATCTTGCTTTCCATCTTAGTAGTATCTTTG
Protein sequenceShow/hide protein sequence
MMSNMNTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMD
GKASRRPLRISFALDKVRGGPVVIPRLSNVNNMVGQRCGNQ