CuGenDBv2

Gene ID	Cla97C02G036205
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	DNA-directed RNA polymerase subunit beta
Genome location	Cla97Chr02:16309958..16314251
RNA-Seq Expression	Cla97C02G036205
Synteny	Cla97C02G036205
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0032549 - ribonucleoside binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AHM88854.1 RNA polymerase beta subunit, partial [Lagenaria siceraria]

4.7e-21

76.39

Show/hide

Query:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG
        G +R++    G+   AIAEH GKIIYT+TDKIIFSGNGYTRRIPLI+YQ SNKNTCMQQKSQVHQGKCIK G
Subjt:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG

AHM89856.1 RNA polymerase beta subunit [Lagenaria siceraria]

4.7e-21

76.39

Show/hide

Query:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG
        G +R++    G+   AIAEH GKIIYT+TDKIIFSGNGYTRRIPLI+YQ SNKNTCMQQKSQVHQGKCIK G
Subjt:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG

ART64964.1 RNA polymerase beta subunit [Gynostemma pentaphyllum]

2.8e-21

76.39

Show/hide

Query:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG
        G +R++    G+   AIAEH GKIIYT+TDKIIFSGNGYTRRIPL+IYQ SNKNTCMQQKSQVHQGKCIK G
Subjt:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG

YP_009236272.1 RNA polymerase beta subunit [Gynostemma pentaphyllum]

2.8e-21

76.39

Show/hide

Query:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG
        G +R++    G+   AIAEH GKIIYT+TDKIIFSGNGYTRRIPL+IYQ SNKNTCMQQKSQVHQGKCIK G
Subjt:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG

YP_009468853.1 RNA polymerase beta subunit [Gynostemma compressum]

3.6e-21

Show/hide

Query:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG
        G +R++    G+   AIAEH GKIIYT+TDKIIFSGNGYTRRIPL++YQ SNKNTCMQQKSQVHQGKCIK G
Subjt:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG

TrEMBL top hits

e value

%identity

Alignment

A0A109WXU0 DNA-directed RNA polymerase subunit beta

1.3e-21

76.39

Show/hide

Query:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG
        G +R++    G+   AIAEH GKIIYT+TDKIIFSGNGYTRRIPL+IYQ SNKNTCMQQKSQVHQGKCIK G
Subjt:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG

A0A286QM55 DNA-directed RNA polymerase subunit beta

1.3e-21

76.39

Show/hide

Query:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG
        G +R++    G+   AIAEH GKIIYT+TDKIIFSGNGYTRRIPL+IYQ SNKNTCMQQKSQVHQGKCIK G
Subjt:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG

A0A291IB39 DNA-directed RNA polymerase subunit beta

1.3e-21

76.39

Show/hide

Query:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG
        G +R++    G+   AIAEH GKIIYT+TDKIIFSGNGYTRRIPL+IYQ SNKNTCMQQKSQVHQGKCIK G
Subjt:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG

A0A2L0WR02 DNA-directed RNA polymerase subunit beta

1.8e-21

Show/hide

Query:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG
        G +R++    G+   AIAEH GKIIYT+TDKIIFSGNGYTRRIPL++YQ SNKNTCMQQKSQVHQGKCIK G
Subjt:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG

X2F5U4 DNA-directed RNA polymerase subunit beta

2.3e-21

76.39

Show/hide

Query:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG
        G +R++    G+   AIAEH GKIIYT+TDKIIFSGNGYTRRIPLI+YQ SNKNTCMQQKSQVHQGKCIK G
Subjt:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG

SwissProt top hits

e value

%identity

Alignment

Q14FG5 DNA-directed RNA polymerase subunit beta

7.8e-19

65.28

Show/hide

Query:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG
        G +R++    G+   AIAEHEGKIIYT+ DKII SGNGYT  IPL++YQ SNKNTCM QK+QV +GKCIK G
Subjt:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG

Q1KXX2 DNA-directed RNA polymerase subunit beta

7.8e-19

69.84

Show/hide

Query:  LAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMGNFFKF
        LAIAEHEGKI YT+TDKI+ SGNG T RIPL++YQ SNKNTCM QK QV +GKCIK G    +
Subjt:  LAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMGNFFKF

Q4VZP1 DNA-directed RNA polymerase subunit beta

8.1e-24

Show/hide

Query:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG
        G +R++    G+   AIAEH GKIIYT+TDKIIFSGNGYTRRIPL++YQ SNKNTCMQQKSQVHQGKCIK G
Subjt:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG

Q56P13 DNA-directed RNA polymerase subunit beta

7.8e-19

69.84

Show/hide

Query:  LAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMGNFFKF
        LAIAEHEG+IIYT+TDKI+ SGNG T RIPL++YQ SNKNTCM QK QV +GKCIK G    +
Subjt:  LAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMGNFFKF

Q68S14 DNA-directed RNA polymerase subunit beta

6.0e-19

77.59

Show/hide

Query:  LAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG
        LAIAEHEGKIIYT+TDKI+ SGNG T  IPL+IYQ SNKNTCM QK QV +GKCIK G
Subjt:  LAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG

Arabidopsis top hits

e value

%identity

Alignment

ATCG00190.1 RNA polymerase subunit beta

2.1e-19

63.89

Show/hide

Query:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG
        G +R++    G+   AIAEHEGKI+YT+T+KI+FSGNG T  IPLI+YQ SNKNTCM QK QV +GKCIK G
Subjt:  GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGGGAAGAGGTCGAGGTGGAATCCAGGGCTTACCTATGGAAAATCGAGCCTGTGAAGGTTCAAGAAGAGGCCAAATTAGAACTGAAGAGATTTGTGCCCTCCTTGGC
CTTGGTGGCCGAGGATGAGATCAAAGTGGAATCGAAGAAATTTGTGTCCTTCTTGGCCTTGAATCATCAGATGAAGGAGGAAGATCATGTTCTCTCGACGCCGGATGTAG
GCATCATGAAGAAAGGTGTAGCTTTGACCGAGATATTGACGGGAAGATTTCTTGCACCACCAATCATAGAGGATGGTAAATCCCCCACGAGCATAGAAGGTTCTCAACCA
AGTAATCAGGGAAGTGATAGAAGATTACTCAACCAAGAAGGGCTCATGCAGCTGGCTATAGCTGAACACGAGGGAAAGATCATTTATACCAACACTGACAAGATCATTTT
TTCGGGAAATGGGTATACTCGAAGAATTCCATTAATTATTTATCAATGTTCTAACAAAAATACTTGTATGCAGCAAAAATCCCAGGTTCACCAAGGTAAATGCATTAAAA
TGGGAAATTTTTTTAAATTCATTTTCCAAAAAACTTCAATTGATACAAGTAAGAAATATGCCAATTCAGCAGCCTTTTGCTCAATTTCTCGTGGGGTTAGATTATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MREEVEVESRAYLWKIEPVKVQEEAKLELKRFVPSLALVAEDEIKVESKKFVSFLALNHQMKEEDHVLSTPDVGIMKKGVALTEILTGRFLAPPIIEDGKSPTSIEGSQP
SNQGSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMGNFFKFIFQKTSIDTSKKYANSAAFCSISRGVRL

Cla97C02G036205 (gene) of Watermelon (97103) v2.5 genome