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Cla97C02G048100 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C02G048100
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description60S acidic ribosomal protein family
Genome locationCla97Chr02:35691664..35692980
RNA-Seq ExpressionCla97C02G048100
SyntenyCla97C02G048100
Gene Ontology termsGO:0002182 - cytoplasmic translational elongation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR027534 - Ribosomal protein L12/P1/P2 family
IPR038716 - Ribosomal protein P1/P2, N-terminal domain
IPR044076 - Ribosomal protein P2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570492.1 60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia]1.3e-4473.55Show/hide
Query:  MIFPRNYTPFYYFR--TKIPSSSGQAHISLTLRCSFCFELSQVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGRE
        ++ PR +  FYY    + +PS    A ++        F   +VVAAYLLAVLGGNT+PGLDDVK ILNSVGAEVD+DRI  LLS+VKGKDITELIASGRE
Subjt:  MIFPRNYTPFYYFR--TKIPSSSGQAHISLTLRCSFCFELSQVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGRE

Query:  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
        KLASVPSGGGAV +AAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
Subjt:  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD

KAG7010354.1 60S acidic ribosomal protein P2B [Cucurbita argyrosperma subsp. argyrosperma]3.6e-4492.11Show/hide
Query:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE
        +VVAAYLLAVLGGNT+PGLDDVK ILNSVGAEVD+DRI  LLS+VKGKDITELIASGREKLASVPSGGGAV +AAPAGGAAGGGAAPAAAEQKKEEKVEE
Subjt:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

XP_022944125.1 60S acidic ribosomal protein P2B-like [Cucurbita moschata]1.1e-4391.23Show/hide
Query:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE
        +VVAAYLLAVLGGNT+PGLDDVK ILNSVGAEVD+DRI  LLS+VKGKDITELIASGREKLASVPSGGGAV +AAPAGG AGGGAAPAAAEQKKEEKVEE
Subjt:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

XP_022986046.1 60S acidic ribosomal protein P2B-like [Cucurbita maxima]1.1e-4391.23Show/hide
Query:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE
        +VVAAYLLAVLGGNT+PGLDDVK ILNSVGAEVD+DRI  LLS+VKGKDITELIASGREKLASVPSGGGAV +AAPAGGAAGGGAAPAA EQKKEEKVEE
Subjt:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

XP_038901119.1 60S acidic ribosomal protein P2B-like [Benincasa hispida]5.6e-4593.86Show/hide
Query:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE
        +VVAAYLLAVLGGN +PGLDDVKSILNSVGAEVDDDRIGLLLS+VKGKDITELIASGREKLASVPSGGGA+AV+APAGGAAGGGAA AAAEQKKEEKVEE
Subjt:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

TrEMBL top hitse value%identityAlignment
A0A1S3C8T5 60S acidic ribosomal protein P2B-like9.7e-4387.72Show/hide
Query:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE
        +VVAAYLLAVLGGNT+PG+DDVK+ILNSVG E+D++RI LLLSEVKGKD+TELIASGREKLASVPSGGGA+AV+A AGGAAGGGAAPA AEQKKEEKVEE
Subjt:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

A0A5A7SR49 60S acidic ribosomal protein P2B-like9.7e-4387.72Show/hide
Query:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE
        +VVAAYLLAVLGGNT+PG+DDVK+ILNSVG E+D++RI LLLSEVKGKD+TELIASGREKLASVPSGGGA+AV+A AGGAAGGGAAPA AEQKKEEKVEE
Subjt:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

A0A6J1DJB9 60S acidic ribosomal protein P2B-like4.3e-4389.47Show/hide
Query:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE
        +VVAAYLLAVLGGNT+PG DDVK+ILNSVG EVD+DRI  LLS+VKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAE+KKEEKVEE
Subjt:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE

Query:  KEESDDDMGFSLFD
        KE+SDDD+GFSLFD
Subjt:  KEESDDDMGFSLFD

A0A6J1FYH3 60S acidic ribosomal protein P2B-like5.1e-4491.23Show/hide
Query:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE
        +VVAAYLLAVLGGNT+PGLDDVK ILNSVGAEVD+DRI  LLS+VKGKDITELIASGREKLASVPSGGGAV +AAPAGG AGGGAAPAAAEQKKEEKVEE
Subjt:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

A0A6J1J9Z4 60S acidic ribosomal protein P2B-like5.1e-4491.23Show/hide
Query:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE
        +VVAAYLLAVLGGNT+PGLDDVK ILNSVGAEVD+DRI  LLS+VKGKDITELIASGREKLASVPSGGGAV +AAPAGGAAGGGAAPAA EQKKEEKVEE
Subjt:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

SwissProt top hitse value%identityAlignment
O24415 60S acidic ribosomal protein P2B1.0e-3372.81Show/hide
Query:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE
        +V+AAYLLAVLGGNT+P  DDVKSIL SVGAE D++++  LL+E+K KDITE+IA+GRE+L+SVPSGGGA+ + APA   AGGGAAP A E KKEEKVEE
Subjt:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESD+DMGFSLFD
Subjt:  KEESDDDMGFSLFD

P41099 60S acidic ribosomal protein P26.3e-3171.93Show/hide
Query:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE
        +V+AA+LLA+LGGNT+P  +D+KSIL SVGA+ DDD+I LLLS+VKGKDITELIASGRE+LASVPSGGG VAVAA AGG  G   A AA E KKEEK E 
Subjt:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE

Query:  KEESDDDMGFSLFD
         EESD+++GFSLFD
Subjt:  KEESDDDMGFSLFD

P46252 60S acidic ribosomal protein P2A9.7e-3274.11Show/hide
Query:  VAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKE
        VAAYLLAVL GN +P  DD+ +IL SVG EVD++++ LLLS++ GKDITELIA+GREK ASVP GGG VAVAA A   A GGAAP AAE KKEEKVEEKE
Subjt:  VAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKE

Query:  ESDDDMGFSLFD
        ESDDDMGFSLFD
Subjt:  ESDDDMGFSLFD

P51407 60S acidic ribosomal protein P2-11.1e-3070.43Show/hide
Query:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVE
        +VVAA+LLAVL G  +P   D+K IL SVGAE +D +I LLL EVKGKD+ ELIA+GREKLASVPS GGG VAVA+   G  GGG AP AAE KKEEK E
Subjt:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

Q9SLF7 60S acidic ribosomal protein P2-23.1e-3070.43Show/hide
Query:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVE
        +VVAAYLLAVL G  +P   D+K+IL SVGAE +D +I LLL EVKGKD+ ELIA+GREKLASVPS GGG VAVA+   G  GGG A +AAE KKEEK E
Subjt:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

Arabidopsis top hitse value%identityAlignment
AT2G27710.1 60S acidic ribosomal protein family2.2e-3170.43Show/hide
Query:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVE
        +VVAAYLLAVL G  +P   D+K+IL SVGAE +D +I LLL EVKGKD+ ELIA+GREKLASVPS GGG VAVA+   G  GGG A +AAE KKEEK E
Subjt:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT2G27710.2 60S acidic ribosomal protein family2.2e-3170.43Show/hide
Query:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVE
        +VVAAYLLAVL G  +P   D+K+IL SVGAE +D +I LLL EVKGKD+ ELIA+GREKLASVPS GGG VAVA+   G  GGG A +AAE KKEEK E
Subjt:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT2G27710.3 60S acidic ribosomal protein family2.2e-3170.43Show/hide
Query:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVE
        +VVAAYLLAVL G  +P   D+K+IL SVGAE +D +I LLL EVKGKD+ ELIA+GREKLASVPS GGG VAVA+   G  GGG A +AAE KKEEK E
Subjt:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT2G27720.1 60S acidic ribosomal protein family7.6e-3270.43Show/hide
Query:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVE
        +VVAA+LLAVL G  +P   D+K IL SVGAE +D +I LLL EVKGKD+ ELIA+GREKLASVPS GGG VAVA+   G  GGG AP AAE KKEEK E
Subjt:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT3G44590.2 60S acidic ribosomal protein family3.8e-3168.42Show/hide
Query:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE
        +V AA+LLAVLGGN NP  D++K I+ +VGA+VD + I LLL EV GKDI ELIASGREKLASVPSGGG    AAP+ G  GG AAPA   +KKE K EE
Subjt:  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLF+
Subjt:  KEESDDDMGFSLFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTTCCCGCGCAATTATACACCTTTTTATTATTTTAGGACGAAAATACCCTCCTCGTCGGGACAGGCGCATATCTCTCTCACTCTTCGTTGCAGCTTCTGTTTTGA
ACTTTCCCAAGTCGTCGCTGCATATTTGTTGGCCGTTCTCGGTGGCAACACCAACCCCGGACTCGATGATGTGAAGTCTATTCTTAATTCAGTTGGGGCTGAGGTGGATG
ACGACAGGATTGGCTTGCTACTATCCGAAGTGAAAGGAAAGGATATCACAGAGTTGATAGCCTCCGGACGGGAGAAGTTGGCGTCAGTGCCATCTGGTGGCGGTGCAGTC
GCCGTTGCCGCCCCGGCCGGTGGTGCTGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGCAGAAAAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGATAT
GGGTTTCAGCCTCTTTGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTTTCCCGCGCAATTATACACCTTTTTATTATTTTAGGACGAAAATACCCTCCTCGTCGGGACAGGCGCATATCTCTCTCACTCTTCGTTGCAGCTTCTGTTTTGA
ACTTTCCCAAGTCGTCGCTGCATATTTGTTGGCCGTTCTCGGTGGCAACACCAACCCCGGACTCGATGATGTGAAGTCTATTCTTAATTCAGTTGGGGCTGAGGTGGATG
ACGACAGGATTGGCTTGCTACTATCCGAAGTGAAAGGAAAGGATATCACAGAGTTGATAGCCTCCGGACGGGAGAAGTTGGCGTCAGTGCCATCTGGTGGCGGTGCAGTC
GCCGTTGCCGCCCCGGCCGGTGGTGCTGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGCAGAAAAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGATAT
GGGTTTCAGCCTCTTTGACTGAGCAACTCATTTGGTGTCGTTATCAGTTAGTGTTTTAGTTGATTTTCGCTCAAGTTTCCGAGCTTTGGTAGCTTGGTAGGGGTTTTTTC
TTTTGACTTATTTAGAACTCAAAAATTTTGATAGATGAAAGTTCAATTTTCAATTTCAATATTTCAGTAATTACTGTCATCTGACTTTGTTTGTGATCTATAATTCCCAC
TGTTTCTTACCTCATTGTGCATGACTAGTCTTGGCTTATGCTAAT
Protein sequenceShow/hide protein sequence
MIFPRNYTPFYYFRTKIPSSSGQAHISLTLRCSFCFELSQVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAV
AVAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD