CuGenDBv2

Gene ID	Cla97C04G070220
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Ribosome biogenesis protein
Genome location	Cla97Chr04:10585687..10589138
RNA-Seq Expression	Cla97C04G070220
Synteny	Cla97C04G070220
Gene Ontology terms	GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0005730 - nucleolus (cellular component) GO:0030686 - 90S preribosome (cellular component) GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domains	IPR028160 - Ribosome biogenesis protein Slx9-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037498.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa]

1.1e-64

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Query:  DPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVF
        D KSKAERKFEKKVQFYERVGE+IATLNAQK+ITKKKNHRRRKR+LKAFDLSTLSEFLPGLEA KQKPSAA+LKLNCKSRLKFILKER+QMGTVLNHPVF
Subjt:  DPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVF

Query:  QADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM
        QADP++A+QLHLEGTQP EEP+KKK NKNGS KRKEKK KASARPSSMEM
Subjt:  QADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM

KAA0062508.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa]

1.4e-72

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Query:  WEAKRNTWFTLRGSNILQIFLYPISSPHLALFIHNGVEVAGFLQDRVLKISNQKTRELSLWANQSLDPKSKAERKFEKKVQFYERVGETIATLNAQKTIT
        +E + N  F L G NI  I L  +S+    L +  G E+  F        SNQKT +L LWANQS D KSKAERKFEKKVQFYERVGE+IATLNAQK+IT
Subjt:  WEAKRNTWFTLRGSNILQIFLYPISSPHLALFIHNGVEVAGFLQDRVLKISNQKTRELSLWANQSLDPKSKAERKFEKKVQFYERVGETIATLNAQKTIT

Query:  KKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKR
        KKKNHRRRKR+LKAFDLSTLSEFLPGLEA KQKPSAA+LKLNCKSRLKFILKER+QMGTVLNHPVFQADP++A+QLHLEGTQPIEEP+KKK NKNGS KR
Subjt:  KKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKR

Query:  KEKKSKASARPSSMEM
        KEKKSKA ARPSSMEM
Subjt:  KEKKSKASARPSSMEM

XP_004144346.1 putative ribosome biogenesis protein slx9-like [Cucumis sativus]

1.2e-65

90.67

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Query:  DPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVF
        D KSKAERKFEKKVQFYERVGETI TLNAQK+ITKKKNHRRRKR+LKAFDLSTLSEFLPGLEA KQKPSAA+LKLNCKSRLKFILKER+QMGTVLNHPVF
Subjt:  DPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVF

Query:  QADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM
        QADP++A+QLHLEGTQPIEEP+KKK NKNGS KRKEKKSKASA+PSSMEM
Subjt:  QADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM

XP_038883686.1 putative ribosome biogenesis protein slx9-like isoform X1 [Benincasa hispida]

3.2e-61

87.33

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Query:  DPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVF
        D KSKAERKFEKKVQFYERVGETI+TLNAQKTI+KKK++RRRKR+LKAFDLS LSEFLPGL APKQKPSAA+ KLNCKSRLKF+LKER+QM TVLNHPVF
Subjt:  DPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVF

Query:  QADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM
        QADP++AI+LHLEGTQPIEEP+KKKTNKNGS KRKEKKS ASARPSSMEM
Subjt:  QADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM

XP_038900086.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida]

9.5e-66

92.67

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Query:  DPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVF
        D KSKAERKFEKKVQFYERVGETI+TLNAQKTITKKK+HRRRKR+LKAFDLSTLSEFLPGLEAPKQKPSAA+LKLNCKSRLKFILKER+QMGTVLNHPVF
Subjt:  DPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVF

Query:  QADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM
        QADP++AIQLHLEGTQPIEEP KKKTNKNGS KRKEKKSKAS RPSSMEM
Subjt:  QADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L113 Uncharacterized protein

6.0e-66

90.67

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Query:  DPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVF
        D KSKAERKFEKKVQFYERVGETI TLNAQK+ITKKKNHRRRKR+LKAFDLSTLSEFLPGLEA KQKPSAA+LKLNCKSRLKFILKER+QMGTVLNHPVF
Subjt:  DPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVF

Query:  QADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM
        QADP++A+QLHLEGTQPIEEP+KKK NKNGS KRKEKKSKASA+PSSMEM
Subjt:  QADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM

A0A5A7V4K7 Putative ribosome biogenesis protein slx9-like

6.6e-73

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Query:  WEAKRNTWFTLRGSNILQIFLYPISSPHLALFIHNGVEVAGFLQDRVLKISNQKTRELSLWANQSLDPKSKAERKFEKKVQFYERVGETIATLNAQKTIT
        +E + N  F L G NI  I L  +S+    L +  G E+  F        SNQKT +L LWANQS D KSKAERKFEKKVQFYERVGE+IATLNAQK+IT
Subjt:  WEAKRNTWFTLRGSNILQIFLYPISSPHLALFIHNGVEVAGFLQDRVLKISNQKTRELSLWANQSLDPKSKAERKFEKKVQFYERVGETIATLNAQKTIT

Query:  KKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKR
        KKKNHRRRKR+LKAFDLSTLSEFLPGLEA KQKPSAA+LKLNCKSRLKFILKER+QMGTVLNHPVFQADP++A+QLHLEGTQPIEEP+KKK NKNGS KR
Subjt:  KKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVFQADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKR

Query:  KEKKSKASARPSSMEM
        KEKKSKA ARPSSMEM
Subjt:  KEKKSKASARPSSMEM

A0A5D3BQL6 Putative ribosome biogenesis protein slx9-like

5.1e-65

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Query:  DPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVF
        D KSKAERKFEKKVQFYERVGE+IATLNAQK+ITKKKNHRRRKR+LKAFDLSTLSEFLPGLEA KQKPSAA+LKLNCKSRLKFILKER+QMGTVLNHPVF
Subjt:  DPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVF

Query:  QADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM
        QADP++A+QLHLEGTQP EEP+KKK NKNGS KRKEKK KASARPSSMEM
Subjt:  QADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM

A0A6J1E5M8 putative ribosome biogenesis protein slx9-like

2.5e-56

80.67

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Query:  DPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVF
        D KSKAERKFEKK+QFYERVGETIATLNAQKTITKKK  RRRKR+LKAFDL+ LSEFLPGL+APKQK S  +LK+NCKSRLKF+LKE +QMGTVLNHP F
Subjt:  DPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVF

Query:  QADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM
        QADP+ AI LHL+ TQP+EE +KKKTN+NGS KRKEKKSKA+A+PSSMEM
Subjt:  QADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM

A0A6J1JDX4 putative ribosome biogenesis protein slx9-like

3.3e-56

80.67

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Query:  DPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVF
        D KSKAERKFEKK+QFYERVGETIATLNAQKTITKKK  RRRKR+LKAFDL+ LSEFLPGL+ PKQK S  +LK+NCKSRLKF+LKE +QMGTVLNHP F
Subjt:  DPKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVF

Query:  QADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM
        QADP+ AI LHLE TQP+EE +KKKTN+NGS KRKEKKSKA+A+PSSMEM
Subjt:  QADPVKAIQLHLEGTQPIEEPRKKKTNKNGSTKRKEKKSKASARPSSMEM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G01640.1 unknown protein

3.1e-30

52.11

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Query:  SKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEA-PKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVFQA
        +K+++KFEKK+QFY +V +T+ +L+ QK I KKK  R R+++LKA+DL+ LSEFLP   A  K    A +LK+NCK R K +L E E++  VL+HP FQA
Subjt:  SKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEA-PKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVFQA

Query:  DPVKAIQLHLEGTQ-PIEEPRKKKTNKNGSTKRKEKKSKASA
        DPV +I  HL   Q P+EE  KKKTN NGS KR +KK K  +
Subjt:  DPVKAIQLHLEGTQ-PIEEPRKKKTNKNGSTKRKEKKSKASA

AT2G01640.2 unknown protein

3.1e-30

52.11

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Query:  SKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEA-PKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVFQA
        +K+++KFEKK+QFY +V +T+ +L+ QK I KKK  R R+++LKA+DL+ LSEFLP   A  K    A +LK+NCK R K +L E E++  VL+HP FQA
Subjt:  SKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEA-PKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVFQA

Query:  DPVKAIQLHLEGTQ-PIEEPRKKKTNKNGSTKRKEKKSKASA
        DPV +I  HL   Q P+EE  KKKTN NGS KR +KK K  +
Subjt:  DPVKAIQLHLEGTQ-PIEEPRKKKTNKNGSTKRKEKKSKASA

Sequences

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CDS sequence

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ATGACTAGTGTGGGAGGAAATGACATAGGACAAACTTTTTGCAATCGTCGGTGGGGTGGCAAAGAAGTTTTGTTTGCTGAAATTTACAAAGAAGACAGTTGGCGGCAGTG
GGAGGCTAAACGTAACACATGGTTTACACTTAGAGGTTCAAATATCTTGCAGATTTTCTTATACCCTATTTCATCTCCACATCTTGCCCTCTTCATCCACAACGGAGTTG
AGGTTGCCGGTTTCCTCCAAGACCGAGTGCTCAAGATCAGTAATCAGAAAACTCGCGAGTTGTCATTATGGGCAAACCAGTCTCTCGATCCAAAATCAAAAGCTGAACGC
AAATTTGAAAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAACTATTGCTACCTTGAATGCTCAAAAGACTATTACTAAGAAGAAAAACCATAGAAGACGTAAAAGGGA
GTTGAAGGCTTTTGATCTTTCTACTCTGTCAGAGTTTCTTCCAGGATTGGAGGCCCCTAAACAAAAACCTTCTGCGGCTGATTTAAAACTAAATTGCAAGTCTAGGCTAA
AGTTTATATTGAAGGAGAGAGAGCAAATGGGTACTGTTCTTAATCACCCTGTATTTCAGGCAGACCCAGTGAAAGCTATTCAACTACATTTAGAGGGCACACAACCAATT
GAGGAACCAAGGAAAAAGAAGACGAACAAAAATGGGAGCACGAAAAGGAAAGAGAAGAAGTCGAAAGCCTCTGCAAGGCCTTCATCTATGGAGATGTGA

mRNA sequence

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Protein sequence

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MTSVGGNDIGQTFCNRRWGGKEVLFAEIYKEDSWRQWEAKRNTWFTLRGSNILQIFLYPISSPHLALFIHNGVEVAGFLQDRVLKISNQKTRELSLWANQSLDPKSKAER
KFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRELKAFDLSTLSEFLPGLEAPKQKPSAADLKLNCKSRLKFILKEREQMGTVLNHPVFQADPVKAIQLHLEGTQPI
EEPRKKKTNKNGSTKRKEKKSKASARPSSMEM

Cla97C04G070220 (gene) of Watermelon (97103) v2.5 genome