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Cla97C04G073600 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C04G073600
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Descriptiontrihelix transcription factor GT-3b-like
Genome locationCla97Chr04:21304836..21305135
RNA-Seq ExpressionCla97C04G073600
SyntenyCla97C04G073600
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR044822 - Myb/SANT-like DNA-binding domain 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603581.1 Trihelix transcription factor GT-3b, partial [Cucurbita argyrosperma subsp. sororia]5.8e-3586.81Show/hide
Query:  CDLRRAILDRRPNRIGVNAE---AGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK
        CD RRA L RR NRIGVNAE   A DRFP WSVPETKELLAIRAALDR FSEMKQNRMLWIS+A KMKAKGFNRNDEQCKCKWKNLVTRYK
Subjt:  CDLRRAILDRRPNRIGVNAE---AGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK

KAG7033768.1 Trihelix transcription factor GT-3b, partial [Cucurbita argyrosperma subsp. argyrosperma]5.8e-3586.81Show/hide
Query:  CDLRRAILDRRPNRIGVNAE---AGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK
        CD RRA L RR NRIGVNAE   A DRFP WSVPETKELLAIRAALDR FSEMKQNRMLWIS+A KMKAKGFNRNDEQCKCKWKNLVTRYK
Subjt:  CDLRRAILDRRPNRIGVNAE---AGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK

XP_011653700.1 trihelix transcription factor GT-3b [Cucumis sativus]2.4e-3684.95Show/hide
Query:  MEDYCDLRRAILDRRPNRIGVNAE-AGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK
        MED+CDLRRA+     +RIGVNAE AGDRFPPWSV ETKELLAIRAALD++FSEMKQNRMLWISVA+KMKAKGFNR+DEQCKCKWKNLVTRYK
Subjt:  MEDYCDLRRAILDRRPNRIGVNAE-AGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK

XP_023544953.1 trihelix transcription factor GT-3b-like [Cucurbita pepo subsp. pepo]1.5e-3587.37Show/hide
Query:  MEDYCDLRRAILDRRPNRIGVNAE---AGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK
        MED CD RRA L RR NRIGVNAE   A DRFP WSVPETKELLAIRAALDR FSEMKQNRMLWISVA KMKAKGFNRNDEQCKCKWKNLVTRYK
Subjt:  MEDYCDLRRAILDRRPNRIGVNAE---AGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK

XP_038883623.1 trihelix transcription factor GT-3b-like [Benincasa hispida]8.4e-4292.39Show/hide
Query:  MEDYCDLRRAILDRRPNRIGVNAEAGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK
        MEDYCD+RRAIL RRP+ IGVN  AGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRN EQCKCKWKNLVTRYK
Subjt:  MEDYCDLRRAILDRRPNRIGVNAEAGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK

TrEMBL top hitse value%identityAlignment
A0A0A0KZY4 Myb-like domain-containing protein1.1e-3684.95Show/hide
Query:  MEDYCDLRRAILDRRPNRIGVNAE-AGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK
        MED+CDLRRA+     +RIGVNAE AGDRFPPWSV ETKELLAIRAALD++FSEMKQNRMLWISVA+KMKAKGFNR+DEQCKCKWKNLVTRYK
Subjt:  MEDYCDLRRAILDRRPNRIGVNAE-AGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK

A0A1S3CKZ2 trihelix transcription factor GT-3b isoform X16.3e-3580.61Show/hide
Query:  MEDYCDLRRAILDRRPNRI-GVNAE--AGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYKVIN
        MED+CDLRRA+   R +RI GVNA+  AGDRFPPWSV ETKELLAIRAALD++FSEMKQNRMLWISVA KMKAKGFNR+DEQCKCKWKNLVTRYK ++
Subjt:  MEDYCDLRRAILDRRPNRI-GVNAE--AGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYKVIN

A0A5A7UVF8 Trihelix transcription factor GT-3b isoform X21.1e-3483.16Show/hide
Query:  MEDYCDLRRAILDRRPNRI-GVNAE--AGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK
        MED+CDLRRA+   R +RI GVNA+  AGDRFPPWSV ETKELLAIRAALD++FSEMKQNRMLWISVA KMKAKGFNR+DEQCKCKWKNLVTRYK
Subjt:  MEDYCDLRRAILDRRPNRI-GVNAE--AGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK

A0A5D3DZE6 Trihelix transcription factor GT-3b isoform X21.1e-3483.16Show/hide
Query:  MEDYCDLRRAILDRRPNRI-GVNAE--AGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK
        MED+CDLRRA+   R +RI GVNA+  AGDRFPPWSV ETKELLAIRAALD++FSEMKQNRMLWISVA KMKAKGFNR+DEQCKCKWKNLVTRYK
Subjt:  MEDYCDLRRAILDRRPNRI-GVNAE--AGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK

A0A6J1GFW6 trihelix transcription factor GT-3b-like1.1e-3485.87Show/hide
Query:  CDLRRAILDRRPNRIGVNAE----AGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK
        CD RRA L RR NRIGVNAE    A DRFP WSVPETKELLAIR ALDR FSEMKQNRMLWISVA KMKAKGFNRNDEQCKCKWKNLVTRYK
Subjt:  CDLRRAILDRRPNRIGVNAE----AGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK

SwissProt top hitse value%identityAlignment
O80450 Trihelix transcription factor GT-3b5.5e-2062.69Show/hide
Query:  GDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK
        GDRFP WSV ETKEL+ IR  LD++F E K+N++LW  +++KM+ K F R+ EQCKCKWKNLVTR+K
Subjt:  GDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK

Q9C6K3 Trihelix transcription factor DF11.7e-0533.85Show/hide
Query:  WSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYKVINE
        W   E + L+ +R  LD  + E      LW  ++  M+  GFNRN ++CK KW+N+   +K + E
Subjt:  WSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYKVINE

Q9FX53 Trihelix transcription factor GT-18.2e-0836.92Show/hide
Query:  RFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK
        R   W   ET+ L+  R  +D  F+  K N+ LW  ++ KM+ KGF+R+   C  KW+NL+  +K
Subjt:  RFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK

Q9LU92 Trihelix transcription factor GT-42.2e-0835.38Show/hide
Query:  RFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK
        R   W+  ET+ L+++R  +D  F+  K N+ LW  ++ KM+ KGF+R+   C  KW+N++  +K
Subjt:  RFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK

Q9SDW0 Trihelix transcription factor GT-3a4.7e-1961.64Show/hide
Query:  GVNAEAGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK
        G     G+R P WS+ ETKELLAIR  LD++F E K+N++LW  VA KM  KGF R+ EQCK KWKNLVTRYK
Subjt:  GVNAEAGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK

Arabidopsis top hitse value%identityAlignment
AT1G13450.1 Homeodomain-like superfamily protein5.9e-0936.92Show/hide
Query:  RFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK
        R   W   ET+ L+  R  +D  F+  K N+ LW  ++ KM+ KGF+R+   C  KW+NL+  +K
Subjt:  RFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK

AT1G13450.2 Homeodomain-like superfamily protein5.9e-0936.92Show/hide
Query:  RFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK
        R   W   ET+ L+  R  +D  F+  K N+ LW  ++ KM+ KGF+R+   C  KW+NL+  +K
Subjt:  RFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK

AT2G38250.1 Homeodomain-like superfamily protein3.9e-2162.69Show/hide
Query:  GDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK
        GDRFP WSV ETKEL+ IR  LD++F E K+N++LW  +++KM+ K F R+ EQCKCKWKNLVTR+K
Subjt:  GDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK

AT3G25990.1 Homeodomain-like superfamily protein1.5e-0935.38Show/hide
Query:  RFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK
        R   W+  ET+ L+++R  +D  F+  K N+ LW  ++ KM+ KGF+R+   C  KW+N++  +K
Subjt:  RFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK

AT5G01380.1 Homeodomain-like superfamily protein3.3e-2061.64Show/hide
Query:  GVNAEAGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK
        G     G+R P WS+ ETKELLAIR  LD++F E K+N++LW  VA KM  KGF R+ EQCK KWKNLVTRYK
Subjt:  GVNAEAGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGATTATTGCGATCTCCGCCGTGCTATTCTTGACCGACGGCCGAATCGAATAGGCGTTAATGCAGAGGCGGGGGATAGGTTTCCGCCGTGGAGTGTACCG
GAGACGAAGGAGTTGCTTGCGATCAGAGCGGCGTTGGATAGAAGCTTCTCGGAGATGAAACAGAATAGGATGCTTTGGATTTCGGTGGCCGATAAGATGAAGGCG
AAAGGCTTCAATCGGAACGATGAGCAGTGTAAGTGCAAATGGAAAAATCTCGTCACTCGTTATAAGGTAATCAATGAATTTTCTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGATTATTGCGATCTCCGCCGTGCTATTCTTGACCGACGGCCGAATCGAATAGGCGTTAATGCAGAGGCGGGGGATAGGTTTCCGCCGTGGAGTGTACCG
GAGACGAAGGAGTTGCTTGCGATCAGAGCGGCGTTGGATAGAAGCTTCTCGGAGATGAAACAGAATAGGATGCTTTGGATTTCGGTGGCCGATAAGATGAAGGCG
AAAGGCTTCAATCGGAACGATGAGCAGTGTAAGTGCAAATGGAAAAATCTCGTCACTCGTTATAAGGTAATCAATGAATTTTCTTTTTAG
Protein sequenceShow/hide protein sequence
MEDYCDLRRAILDRRPNRIGVNAEAGDRFPPWSVPETKELLAIRAALDRSFSEMKQNRMLWISVADKMKAKGFNRNDEQCKCKWKNLVTRYKVINEFSF