CuGenDBv2

Gene ID	Cla97C05G092570
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic
Genome location	Cla97Chr05:10666540..10667845
RNA-Seq Expression	Cla97C05G092570
Synteny	Cla97C05G092570
Gene Ontology terms	GO:0042773 - ATP synthesis coupled electron transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function) GO:0048038 - quinone binding (molecular function)
InterPro domains	IPR003918 - NADH:ubiquinone oxidoreductase

Homology

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GenBank top hits

e value

%identity

Alignment

QZL38645.1 NADH dehydrogenase subunit D [Citrullus naudinianus]

1.9e-59

97.76

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Query:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
        GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
Subjt:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV

Query:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNY
        AISILIPVI IGIYPDFVFSLSVDKVEAILSN +
Subjt:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNY

QZL38733.1 NADH dehydrogenase subunit D [Citrullus ecirrhosus]

6.4e-60

98.51

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Query:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
        GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
Subjt:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV

Query:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNY
        AISILIPVISIGIYPDFVFSLSVDKVEAILSN +
Subjt:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNY

YP_009326040.1 NADH dehydrogenase subunit 4 [Citrullus lanatus]

6.4e-60

98.51

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Query:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
        GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
Subjt:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV

Query:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNY
        AISILIPVISIGIYPDFVFSLSVDKVEAILSN +
Subjt:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNY

YP_009420845.1 NADH dehydrogenase subunit 4 [Citrullus colocynthis]

6.4e-60

98.51

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Query:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
        GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
Subjt:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV

Query:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNY
        AISILIPVISIGIYPDFVFSLSVDKVEAILSN +
Subjt:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNY

YP_009753143.1 NADH dehydrogenase subunit D [Corallocarpus boehmii]

3.2e-59

97.01

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Query:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
        GG+AIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
Subjt:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV

Query:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNY
        AISILIPVI IGIYPDFVFSLSVDKVEAILSN +
Subjt:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNY

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LE40 NAD(P)H-quinone oxidoreductase chain 4

3.1e-60

98.51

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Query:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
        GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
Subjt:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV

Query:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNY
        AISILIPVISIGIYPDFVFSLSVDKVEAILSN +
Subjt:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNY

A0A1P8LEU5 NAD(P)H-quinone oxidoreductase chain 4

3.1e-60

98.51

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Query:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
        GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
Subjt:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV

Query:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNY
        AISILIPVISIGIYPDFVFSLSVDKVEAILSN +
Subjt:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNY

A0A249RX85 NADH dehydrogenase subunit 4

3.1e-60

98.51

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Query:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
        GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
Subjt:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV

Query:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNY
        AISILIPVISIGIYPDFVFSLSVDKVEAILSN +
Subjt:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNY

A0A249RXE0 NADH dehydrogenase subunit 4

3.1e-60

98.51

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Query:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
        GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
Subjt:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV

Query:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNY
        AISILIPVISIGIYPDFVFSLSVDKVEAILSN +
Subjt:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNY

A0A343A8G2 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

3.1e-60

98.51

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Query:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
        GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
Subjt:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV

Query:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNY
        AISILIPVISIGIYPDFVFSLSVDKVEAILSN +
Subjt:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNY

SwissProt top hits

e value

%identity

Alignment

B1NWJ9 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

4.5e-56

85.93

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Query:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
        GG+A  +PKIFTTFSILS+ASLALPGMSGF AELIVFFGIIT QKYLLM+KILIT VMA+GMILTPIYLLSMLRQMFYGYKLFNA NSYFFDSGPRELFV
Subjt:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV

Query:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNYF
        +ISIL+PVI IG YPDFVFSLSVD+VEAILSN ++
Subjt:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNYF

Q09MC6 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

5.0e-55

88.64

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Query:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
        GGLAIPIPKIFT FSILSMASLALPGMSGFVAELIVFFGIITSQK+ LM KI+IT VMAIGMILTPIY LSMLRQMFYGYKLFNA NSYFFDSGPRELFV
Subjt:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV

Query:  AISILIPVISIGIYPDFVFSLSVDKVEAILSN
         ISIL+PVI IGIYPDFV SLS DK EAI+SN
Subjt:  AISILIPVISIGIYPDFVFSLSVDKVEAILSN

Q09WW8 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

2.0e-56

87.41

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Query:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
        GG+AI IPKIFTTFSILSMASLALPGMSGFVAELI+FFGI+TSQKYLLMTKILIT VMAIGMILTPIY LSMLRQMFYGYKLF A NSYF DSGPRE FV
Subjt:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV

Query:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNYF
        +ISIL+PVI+IGIYPDFVFSLSVDKVEA+LSN ++
Subjt:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNYF

Q0ZIW8 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

1.3e-55

87.41

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Query:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
        GG+AIP+PKIFT FSILSMASLALPGMSGFVAELIVFFGIITSQK+LLM KILIT VMAIGMILTPIY LSM RQMFYGYKLFNA NSYFFDSGPRELFV
Subjt:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV

Query:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNYF
         ISI +PVI IGIYPDFV SLSVDKVEAILSN ++
Subjt:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNYF

Q4VZL8 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

1.0e-60

94.78

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Query:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
        GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTK++ITLVMAIG+ILTPIYLLSMLRQMFYGYKLFNA+NSYFFDSGPRELFV
Subjt:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV

Query:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNY
        AISILIPVI IGIYPDFVFSLSVDKVEAILSN +
Subjt:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNY

Arabidopsis top hits

e value

%identity

Alignment

ATCG01050.1 NADH-Ubiquinone/plastoquinone (complex I) protein

2.0e-51

78.52

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Query:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV
        GG+AI IPKIFT F+ILSMASLALPGMSGF+AE IVFFGIITSQKY L++KI I  VMAIGMILTPIYLLSMLRQMFYGYKL N +N  FFDSGPRELF+
Subjt:  GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFV

Query:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNYF
        +ISIL+P+I IGIYPDFV SL+ DKVE+ILSN ++
Subjt:  AISILIPVISIGIYPDFVFSLSVDKVEAILSNNYF

ATMG00580.1 NADH dehydrogenase subunit 4

8.2e-05

27.05

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Query:  VLFFGGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSY---FFDS
        V ++GGL   +P + T F   ++A+++ PG S F+ E ++  G             L+  + A+GMIL   Y L +  ++  G    N +  +   F DS
Subjt:  VLFFGGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSY---FFDS

Query:  GPRELFVAISILIPVISIGIYP
          RE+ + I  L+ ++ +G++P
Subjt:  GPRELFVAISILIPVISIGIYP

Sequences

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CDS sequence

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ATGGTATCGGGTAGGACCGGCCTTTGTATTTTGATTTCCACTATAGCAATAATTGGTAGGGAAGGTAAGGTCCCACTGAAGAGACAACCCTCGTTACTCTCGGGTTTGTC
GGACCGCCTACCCTTGATACTCGGGATACAGGCAGTGCAGAAAGTGTTTAACTTCCGCCTATCCCATCCCCCCTTACCAGAACTCCACTTTGATATGAAGAGTCTGTCCT
CCGGACTGACGGGACTTATTATGAGTTATTTACCGGGGATTGGAATTGTTGAGCACGGTGGAGTCGACTTCTTTATCCGTGGTCGTGGTGGGGCCTACTCTCAATCTAAG
CGGGATACCTTCATAGCCCTGCGTGAAGCTAGAAGGAAAAGCCCCCTTTTTCAGTACAATAAGGGAGTGCTTTTCTTCGGAGGACTGGCTATCCCAATTCCAAAAATCTT
TACGACTTTCAGTATCTTATCGATGGCTTCCCTTGCATTGCCCGGTATGAGCGGTTTTGTTGCAGAATTAATAGTCTTTTTTGGAATAATTACCAGCCAAAAATATCTTT
TAATGACAAAAATACTAATTACTTTGGTAATGGCAATTGGAATGATATTAACTCCCATTTATTTATTATCTATGTTACGCCAGATGTTCTATGGATACAAGCTTTTTAAT
GCTCAAAATTCTTATTTTTTTGATTCGGGACCACGAGAGTTGTTTGTTGCGATCTCTATCCTTATACCTGTCATAAGTATTGGTATTTATCCAGATTTTGTTTTCTCACT
ATCAGTTGACAAGGTCGAAGCTATTTTATCTAATAATTATTTTTAA

mRNA sequence

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Protein sequence

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MVSGRTGLCILISTIAIIGREGKVPLKRQPSLLSGLSDRLPLILGIQAVQKVFNFRLSHPPLPELHFDMKSLSSGLTGLIMSYLPGIGIVEHGGVDFFIRGRGGAYSQSK
RDTFIALREARRKSPLFQYNKGVLFFGGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFN
AQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFSLSVDKVEAILSNNYF

Cla97C05G092570 (gene) of Watermelon (97103) v2.5 genome