; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cla97C08G146010 (gene) of Watermelon (97103) v2.5 genome

Gene IDCla97C08G146010
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Descriptionkeratin, type II cytoskeletal 3 isoform X1
Genome locationCla97Chr08:3809998..3813819
RNA-Seq ExpressionCla97C08G146010
SyntenyCla97C08G146010
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141514.1 glycine-rich cell wall structural protein 1 [Cucumis sativus]2.4e-6688.89Show/hide
Query:  MPRNMNGNRHQGREDDKGLLWNLPVLISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNGNR+Q  ED++GLLWNLPVL SSR G LGPAFGLGVGCGVGFGIGL+GGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRHQGREDDKGLLWNLPVLISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR
        GD+L G QSIFPH+DD+GALVD+LVLNTKRLIRATS+EIDKWKR
Subjt:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR

XP_016902400.1 PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis melo]3.8e-6789.58Show/hide
Query:  MPRNMNGNRHQGREDDKGLLWNLPVLISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNGNR++  ED++GLLWNLPVL SSR G LGPAFGLGVGCGVGFGIGL+GGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRHQGREDDKGLLWNLPVLISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR
        GD+L GHQSIFPH+DD+GALVD+LVLNTKRLIRATSREIDKWKR
Subjt:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR

XP_022932819.1 keratin, type II cytoskeletal 2 epidermal isoform X1 [Cucurbita moschata]9.3e-6686.81Show/hide
Query:  MPRNMNGNRHQGREDDKGLLWNLPVLISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNG+RH+G ED+ G+LW LPVL SSRIG+LGPAFGLGVGCGVGFGIGL+GGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRHQGREDDKGLLWNLPVLISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR
        GDLLNG QSIFPHRD++GALVDEL LNTK+LIR T++EIDKWKR
Subjt:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR

XP_023521208.1 ATP-dependent RNA helicase glh-2 isoform X1 [Cucurbita pepo subsp. pepo]5.8e-6888.89Show/hide
Query:  MPRNMNGNRHQGREDDKGLLWNLPVLISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNG+RH+GRED+ G+LW LPVL SSRIG+LGPAFGLGVGCGVGFGIGL+GGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRHQGREDDKGLLWNLPVLISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR
        GDLLNGHQSIFPHRD++GALVDEL LNTK+LIR T+REIDKWKR
Subjt:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR

XP_038889093.1 ctenidin-1 isoform X1 [Benincasa hispida]3.8e-6790.97Show/hide
Query:  MPRNMNGNRHQGREDDKGLLWNLPVLISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRN NGNRHQG ED+ GLLWNLPVL SSR GKLGPAFGLGVGCGVGFGIGL+GGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRHQGREDDKGLLWNLPVLISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR
        GDLL+GHQSIFP +DD+ ALVDELVLN+KRLIRATSREIDKWKR
Subjt:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR

TrEMBL top hitse value%identityAlignment
A0A0A0KSM8 Uncharacterized protein1.2e-6688.89Show/hide
Query:  MPRNMNGNRHQGREDDKGLLWNLPVLISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNGNR+Q  ED++GLLWNLPVL SSR G LGPAFGLGVGCGVGFGIGL+GGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRHQGREDDKGLLWNLPVLISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR
        GD+L G QSIFPH+DD+GALVD+LVLNTKRLIRATS+EIDKWKR
Subjt:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR

A0A1S4E347 glycine-rich cell wall structural protein 11.8e-6789.58Show/hide
Query:  MPRNMNGNRHQGREDDKGLLWNLPVLISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNGNR++  ED++GLLWNLPVL SSR G LGPAFGLGVGCGVGFGIGL+GGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRHQGREDDKGLLWNLPVLISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR
        GD+L GHQSIFPH+DD+GALVD+LVLNTKRLIRATSREIDKWKR
Subjt:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR

A0A6J1EY31 keratin, type II cytoskeletal 2 epidermal isoform X14.5e-6686.81Show/hide
Query:  MPRNMNGNRHQGREDDKGLLWNLPVLISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNG+RH+G ED+ G+LW LPVL SSRIG+LGPAFGLGVGCGVGFGIGL+GGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRHQGREDDKGLLWNLPVLISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR
        GDLLNG QSIFPHRD++GALVDEL LNTK+LIR T++EIDKWKR
Subjt:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR

A0A6J1F360 keratin, type II cytoskeletal 2 epidermal isoform X22.7e-6385.42Show/hide
Query:  MPRNMNGNRHQGREDDKGLLWNLPVLISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNG+RH+G ED+ G+LW LPVL SSRIG+LGPAFGLGVGCGVGFGIGL+GGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRHQGREDDKGLLWNLPVLISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR
        GDLLNG QSIFP +D++GALVDEL LNTK+LIR T++EIDKWKR
Subjt:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR

A0A6J1ICW2 keratin, type II cytoskeletal 3 isoform X11.9e-6484.72Show/hide
Query:  MPRNMNGNRHQGREDDKGLLWNLPVLISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNG+R +G ED+ G+LW LPVL SSRIG+LGPAFGLGVGCGVGFGIGL+GGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRHQGREDDKGLLWNLPVLISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR
        GDLLNG QSIFPHRD++GA+VDEL LNTK+LI+ T++EIDKWKR
Subjt:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27695.1 glycine-rich protein1.7e-0450.82Show/hide
Query:  LISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVG
        ++ S    +G  FG GVGC  GFG+G     GFG G+P   LG G G GCGVGLG G+G G
Subjt:  LISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVG

AT1G27695.2 glycine-rich protein1.7e-0450.82Show/hide
Query:  LISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVG
        ++ S    +G  FG GVGC  GFG+G     GFG G+P   LG G G GCGVGLG G+G G
Subjt:  LISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVG

AT1G66820.1 glycine-rich protein7.2e-0851.43Show/hide
Query:  LGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQ-----LGFGLGAGCGVGLGFGYGVGRGIAQDD-KRRY
        +GP  G G+GCG G GIGL GG G G    GL      LGFG+G G G G G+G+GVG G + DD K R+
Subjt:  LGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQ-----LGFGLGAGCGVGLGFGYGVGRGIAQDD-KRRY

AT4G10330.1 glycine-rich protein2.9e-4161.48Show/hide
Query:  NRHQGREDDKGLLWNLPVLISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDLLNGH
        NR +  +DDKGLLW LP +    IGK+GPAFGLGVGCG GFG GLIGG GFGPG+PGLQ G G GAGCG+G+GFGYGVGRG A D  R Y NVG      
Subjt:  NRHQGREDDKGLLWNLPVLISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDLLNGH

Query:  QSIFPHRDDVGALVDELVLNTKRLIRATSREIDKW
            P  ++V +L+DELV++TK+L++AT+ EIDKW
Subjt:  QSIFPHRDDVGALVDELVLNTKRLIRATSREIDKW

AT4G14301.1 unknown protein6.3e-0455.17Show/hide
Query:  IGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRG
        IGK G  FG G+G G GFG G+  G GFG GI G   G G G G G G GFG G+G+G
Subjt:  IGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGAAATATGAACGGAAACAGACACCAAGGCCGAGAAGATGACAAAGGATTACTCTGGAATCTTCCAGTTCTTATATCTTCCAGAATCGGAAAGTTAGGTCCCGC
CTTCGGTCTGGGCGTTGGTTGTGGCGTCGGCTTTGGCATCGGCCTCATCGGAGGTGCTGGATTTGGTCCAGGAATTCCTGGCTTACAACTTGGCTTTGGTCTTGGTGCTG
GATGTGGAGTTGGCTTAGGATTTGGCTATGGTGTTGGCAGGGGCATTGCTCAAGATGACAAACGGAGATACTCTAACGTCGGGGATCTATTAAATGGTCATCAAAGTATT
TTTCCTCATAGGGACGATGTTGGCGCGCTTGTTGATGAGCTTGTCTTAAATACAAAGAGACTTATACGAGCTACTTCAAGGGAGATTGACAAGTGGAAAAGATGA
mRNA sequenceShow/hide mRNA sequence
AGAGTATTTTCTATTCATATTCCCGAATTACTTGTTCATATCATCTTCTTCTTATTCGTCCCGACGAGGAAGAAATCAGAAATGCCTCGAAATATGAACGGAAACAGACA
CCAAGGCCGAGAAGATGACAAAGGATTACTCTGGAATCTTCCAGTTCTTATATCTTCCAGAATCGGAAAGTTAGGTCCCGCCTTCGGTCTGGGCGTTGGTTGTGGCGTCG
GCTTTGGCATCGGCCTCATCGGAGGTGCTGGATTTGGTCCAGGAATTCCTGGCTTACAACTTGGCTTTGGTCTTGGTGCTGGATGTGGAGTTGGCTTAGGATTTGGCTAT
GGTGTTGGCAGGGGCATTGCTCAAGATGACAAACGGAGATACTCTAACGTCGGGGATCTATTAAATGGTCATCAAAGTATTTTTCCTCATAGGGACGATGTTGGCGCGCT
TGTTGATGAGCTTGTCTTAAATACAAAGAGACTTATACGAGCTACTTCAAGGGAGATTGACAAGTGGAAAAGATGAATTTACTTATCCTGTTTTTACATTGTATAAGTCC
AATCCCCTTCCCCCATCATTAGAATGAACCAGAAAAAAAACATAGAAGAAAGAAACATGCTGGCTGTCTGTCTATATGGTGTTATATTACTCTGTGGCTTTTAGAGGCAA
AAGTTATGTACAATTGTTTCGAAAGATATATTTAGTTGCTCGAAATCTCATGTGCAGTGGATTTTGAGCAGTCATAAAATGTCGAATACTTGATGAATTAGTTTAGATGG
TGTCTTGAAGGCTGATTTATCATGTCCATACTACAGAAAAAGCTGTTTCATGAGAGGATACTTGTTTCATTTTAAGCTTTTTCTGGCTCATTATGAT
Protein sequenceShow/hide protein sequence
MPRNMNGNRHQGREDDKGLLWNLPVLISSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDLLNGHQSI
FPHRDDVGALVDELVLNTKRLIRATSREIDKWKR